Spg037467 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037467
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Locationscaffold11: 33350094 .. 33350477 (-)
RNA-Seq ExpressionSpg037467
SyntenySpg037467
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCTGTCGAGGTCGAGTTTTGCGGAAGTTCCCATCACCCCCATCAGCAGGCCGAACACAATCGAGATGTCGCAGGAGAGAAAGAGGAGGAGGGGGTCGTACGAAGTAGAGGCCCTAGAGACCATGAGAACATCGATTGAAATGCAGACCACTCAGTTCACGAAGATAGCAGACTGGCCAAACTCTCAGGATGCAAAGGAGTCTTCATGTCGTGTTAGAGTGTCAGATCTGCTCTTAGGGCTTCTTAAGCTGACGGATGATGAGAGAGTGGACCTGATGAAGATTCTCTTCCTAGACCCGAAGATGAAGAACATGTTACTCTCCGTCCCACCTCCCCTGAAACTTCGATTCTGTCGAAGTTTATTGAATGACTACCGGTGA

mRNA sequence

ATGTCGCTGTCGAGGTCGAGTTTTGCGGAAGTTCCCATCACCCCCATCAGCAGGCCGAACACAATCGAGATGTCGCAGGAGAGAAAGAGGAGGAGGGGGTCGTACGAAGTAGAGGCCCTAGAGACCATGAGAACATCGATTGAAATGCAGACCACTCAGTTCACGAAGATAGCAGACTGGCCAAACTCTCAGGATGCAAAGGAGTCTTCATGTCGTGTTAGAGTGTCAGATCTGCTCTTAGGGCTTCTTAAGCTGACGGATGATGAGAGAGTGGACCTGATGAAGATTCTCTTCCTAGACCCGAAGATGAAGAACATGTTACTCTCCGTCCCACCTCCCCTGAAACTTCGATTCTGTCGAAGTTTATTGAATGACTACCGGTGA

Coding sequence (CDS)

ATGTCGCTGTCGAGGTCGAGTTTTGCGGAAGTTCCCATCACCCCCATCAGCAGGCCGAACACAATCGAGATGTCGCAGGAGAGAAAGAGGAGGAGGGGGTCGTACGAAGTAGAGGCCCTAGAGACCATGAGAACATCGATTGAAATGCAGACCACTCAGTTCACGAAGATAGCAGACTGGCCAAACTCTCAGGATGCAAAGGAGTCTTCATGTCGTGTTAGAGTGTCAGATCTGCTCTTAGGGCTTCTTAAGCTGACGGATGATGAGAGAGTGGACCTGATGAAGATTCTCTTCCTAGACCCGAAGATGAAGAACATGTTACTCTCCGTCCCACCTCCCCTGAAACTTCGATTCTGTCGAAGTTTATTGAATGACTACCGGTGA

Protein sequence

MSLSRSSFAEVPITPISRPNTIEMSQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLNDYR
Homology
BLAST of Spg037467 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.5e-06
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 0

Query: 25  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLK 84
           S   KR+RGS   E +E +R+ +E    Q   IADWP  + A E   R +V   L  + K
Sbjct: 204 SSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPK 263

Query: 85  LTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLND 126
           L   +R  LM+ILF   +     LS+P  LKL +C  LL +
Sbjct: 264 LRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNILLQN 304

BLAST of Spg037467 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 39/114 (34.21%), Postives = 59/114 (51.75%), Query Frame = 0

Query: 10  EVPITPISRPNTIEMSQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKES 69
           ++P TP S+P     S   KR+R  Y  E ++ +RT++ MQT    K+A WP+ ++ K+ 
Sbjct: 101 DLPNTPTSKPTIGTSSGGSKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDKKEEKKI 160

Query: 70  SCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLL 124
           + R  V D L  +  L  ++ V L+ IL  + K     L VP   K  FC  LL
Sbjct: 161 ARRKIVHDQLKQIPNLEANDYVRLVGILMTNVKKSISFLEVPIEFKKMFCMQLL 214

BLAST of Spg037467 vs. NCBI nr
Match: KAA0066604.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14214.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05
Identity = 36/101 (35.64%), Postives = 52/101 (51.49%), Query Frame = 0

Query: 25  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLK 84
           S   KR+RGS   E +E +R+++E    Q   IA+WP  +   E   R  V   L  +L+
Sbjct: 28  SSGSKRKRGSEHYETVEVIRSAMEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILE 87

Query: 85  LTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLND 126
           L   +R  LM+ILF   +     LS+P  LKL +C  LL +
Sbjct: 88  LPSRDRAKLMQILFHSVEAIEGFLSIPIELKLEYCNILLQN 128

BLAST of Spg037467 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 35/101 (34.65%), Postives = 49/101 (48.51%), Query Frame = 0

Query: 25  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLK 84
           S   KR+RGS   E +E + ++ E    Q   I DWP  + A E   R  V   L  + +
Sbjct: 161 SSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQ 220

Query: 85  LTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLND 126
           L   +R  LM+ILF   +     LS+P  LKL +C  LL +
Sbjct: 221 LRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLEN 261

BLAST of Spg037467 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 6.8e-04
Identity = 33/101 (32.67%), Postives = 51/101 (50.50%), Query Frame = 0

Query: 25  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLK 84
           S   KR++GS   E +E ++++IE    Q   IA+WP  + A E   R  V   L  + +
Sbjct: 397 SSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVMKQLQDIPE 456

Query: 85  LTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLND 126
           L   +R  L++ILF   +     LS+P   KL +C  LL +
Sbjct: 457 LQSRDRAKLIQILFRSVEAIEGFLSIPTERKLEYCNILLQN 497

BLAST of Spg037467 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 0

Query: 25  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLK 84
           S   KR+RGS   E +E +R+ +E    Q   IADWP  + A E   R +V   L  + K
Sbjct: 204 SSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPK 263

Query: 85  LTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLND 126
           L   +R  LM+ILF   +     LS+P  LKL +C  LL +
Sbjct: 264 LRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNILLQN 304

BLAST of Spg037467 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 0

Query: 25  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLK 84
           S   KR+RGS   E +E +R+ +E    Q   IADWP  + A E   R +V   L  + K
Sbjct: 204 SSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPK 263

Query: 85  LTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLND 126
           L   +R  LM+ILF   +     LS+P  LKL +C  LL +
Sbjct: 264 LRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNILLQN 304

BLAST of Spg037467 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 39/114 (34.21%), Postives = 59/114 (51.75%), Query Frame = 0

Query: 10  EVPITPISRPNTIEMSQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKES 69
           ++P TP S+P     S   KR+R  Y  E ++ +RT++ MQT    K+A WP+ ++ K+ 
Sbjct: 101 DLPNTPTSKPTIGTSSGGSKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDKKEEKKI 160

Query: 70  SCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLL 124
           + R  V D L  +  L  ++ V L+ IL  + K     L VP   K  FC  LL
Sbjct: 161 ARRKIVHDQLKQIPNLEANDYVRLVGILMTNVKKSISFLEVPIEFKKMFCMQLL 214

BLAST of Spg037467 vs. ExPASy TrEMBL
Match: A0A5D3CT52 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00400 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.9e-06
Identity = 36/101 (35.64%), Postives = 52/101 (51.49%), Query Frame = 0

Query: 25  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLK 84
           S   KR+RGS   E +E +R+++E    Q   IA+WP  +   E   R  V   L  +L+
Sbjct: 28  SSGSKRKRGSEHYETVEVIRSAMEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILE 87

Query: 85  LTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLND 126
           L   +R  LM+ILF   +     LS+P  LKL +C  LL +
Sbjct: 88  LPSRDRAKLMQILFHSVEAIEGFLSIPIELKLEYCNILLQN 128

BLAST of Spg037467 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05
Identity = 35/101 (34.65%), Postives = 49/101 (48.51%), Query Frame = 0

Query: 25  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLK 84
           S   KR+RGS   E +E + ++ E    Q   I DWP  + A E   R  V   L  + +
Sbjct: 161 SSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQ 220

Query: 85  LTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLND 126
           L   +R  LM+ILF   +     LS+P  LKL +C  LL +
Sbjct: 221 LRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLEN 261

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008441954.12.5e-0637.62PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
XP_022158565.13.3e-0634.21uncharacterized protein LOC111025018 [Momordica charantia][more]
KAA0066604.11.6e-0535.64retrotransposon protein [Cucumis melo var. makuwa] >TYK14214.1 retrotransposon p... [more]
KAA0031678.11.1e-0434.65retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... [more]
KAA0033290.16.8e-0432.67putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U0H71.2e-0637.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L31.2e-0637.62uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A6J1DW731.6e-0634.21uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5D3CT527.9e-0635.64Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BZU35.1e-0534.65Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037467.1Spg037467.1mRNA