Spg037461 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037461
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein SIEL
Locationscaffold11: 31426763 .. 31429712 (-)
RNA-Seq ExpressionSpg037461
SyntenySpg037461
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGTGCTTACTGCTTACCGCCGCCATCGATGCTCGCCTGTAGCCTCTCCTAGTCTCCTCTTGTGCTCGTGCTTACCACCGCTGTGGGTACTTGCCGTTCTTGTTCTTGTCGGAGTTTAAGTTGCCGTCGGGTAAGTTTGCCTCTCTGATTTTTTTCATTCTTTTCATTCTCGTCGAGTTTAAGTCGCCACCGTCGGGTATTTCTTTTTTTGGTCGGGTTTTCTGGGCTCTGTTCTGGAGTGTGGATTAGGGTTGTCGTTCTATGTTCTGGAGTGTGGATTAAAGTTTTCTGGATTTATTTGGTAATGGGTGAAAGTCTGGATTCTGGGTTTATTTTTTTTGTGTGTTTTTTTTTATGTATGTGTGTTCATTGGTTTTCTATTTTGCGTTTGGGTTTTTGTTGTGATGTTTATGGTGTTTGTTTCAGTGGTTCTTGGTTCCAGGATGTTGTTTATGGTGTTTGTTTCGGTGGTTCTATTTCATGAATTTGGTTTTTATATTGAATGGTTAAGGATTATGTTGTGTGATTTGGTTAAGAATTTGGTTTTTCTGGGTTTATTTGGTATGGTTAAGAATTTGGTTAAGAATGGTTAAGGATTATGTTGTGTATAAGTTTTGCTAGTTCTTTGAAGCATCATTCCTTTGAAATAACTCGGTAACTGAGGAAGGAGGCAACGTCATACCTAAGGAATCAAAAGAACATTGGTAAGATTCCTTAATTCAATGGCAAAAATCATGAAGTTTTAACCAAAACAGATCATGCCAGTAACAGAGCTTGCTGAAAGCAGAATAATTTGCTTCTTATAGCATCAATGGCTTTTCTGTAAACCATTAAGTTGATACTTGAAGAGACAGACCTTTAATAAAATCTTCTAATAAGAGATAATATATATGATAGGTCCATAATCTATGCCATATACCATATATCAACTAAAGTAGTAGATACATCTCAATGACGATACTGATTGAAAATAGAGCAAGATAACTAAACATAAACATTATGGGTTAGTTGAAGCAGGAAATAAGCCGAAAACACTTGTACCTAAGTTACCATTTAAATATCATTGCAGTCAAATTTCAACTATCTTTTCAACTTTGTTTCTAACTCTGGAGCTACATAACCTACATCCTGAATGACATCAAGTAATAAATGTCAGGGAAGTTAGCATTCCTTATACGTAGAATTGTCTTCCACTAGTTTTTCCAAGGGTGAAATGAAAACAAGCTCAAGGCACTTGTATAATGCTAGGATTATGGGTAGCTAAACTCGAGGCACTACATCTCACTAGGGACTTATCATCTACCTGATGTATTCTAATGGATTCAAGATGTCAATTACAGTTTATATTCTAATGGACTTATCATCAAATAGACTTATCCTCCTTCCTCCTTCCTCATTTTTCAATATGACTAATTATTCCAACAAAAAAGAAAGGATAAAAAGAAGACTAATTATTATAAATCTGTTGGTTGCTACTCAGTTGCTTTCATTTGCTCTCTTTTGGTCCTTTTACTTTGATTTTTTTTTGATTTGTTCCCTAACCTTTCATAATTTGGTCCTCGTTTGATAAGCATTGATAAACATTTGGTCCTCGTTTGATAACCATATGGTTTTTTAGATTATTTGGTCCTCGTCTAATGGAATAACTACTACAATGTATAATGTAAAATTCTCCATCTATATCATTTCAGCCAAATTTATGAACAATGGGTTGTTTAACTTTGAGTTATGTGAGTTGTTTTTGGTGAGTGAGTTTATTGGTTGGTAAGAGTTGTTTAGAGTATAAAAAGGAAGTTTCAATTAATCTAGGTTTATGTAGGTTTTAAGATTTGTAAATTTCTAGTTTGGGAATCAAGCAAGCAACAATTACGATGATTTGGGCATTTGTTTGACTCGAATGTTTGTCTTAAACATCTGTGTGTTGGTATATATAGTGTTACCACATGCTGTTCATATGAAGCATACTCTCAATTGATCTATTATTCACATATAGATGATTATTATTGGTTTACTGACTTTTCTGTCCCACCGAACAAGTTTTTGGTCTTTTACATACTCTCATATTGCATCTTTCCTCTTTTTCACTAATGATCTTCTGTATTAGGAAAGTTAACTTGTGAAGGTCAATGGATTATGATGGTTCTGTTAACTCTCTTGAACTTGTCCTTTGCTTCAGATAGACCCAACATCTGAAGGCAAACTTGGATTTGATAATGTGAAGGTGCTTGCATACATTGTTCTCGCTATTTTAGCTCCTGTTTTGGCCACTAACATAATCAGGATTTTTGCATGAAGTTTTAAGGACTTTGAGGTTTGTAAATCAGTTTTTTCTTTAACTACTTTTGAGGCTATACATTAAATGAATTGTTCTTTATCTATGGAAATAGTATGAAGTTTTTCTTAGTACAAGATTAGTTGTCTGTTCTGTTAAAGAAAAACATTCTTTAAAAAAAATATATAAAATAATGTGATTCCCCTGAAATTTTTGAGTATGCAACTATTGTAGCAAAAAGGTTCAAAATGTTTGTCTGAGAGTTCAAATAAATCCAAAACTGTTGACAGAATATGATTATAAGGCAAGCCCATCATACTTCTAGACCAAAGTTTGGTGACATTCTGCACTTTAGGTTCATTTGCAAGTTGTTCTCTTATGGTTAACTAACAGAACTGGCCCTCTACTGCATTTGAATTTCATGGAATTGTCTAACGCTTCGTGTGCTTCTTGTTACAGCCTAGAAAAGCACAAGACAAATAGTAACATTTTGCCACAATTAAGCAATTGATCAAATTACTGATGGATTTGAAAGAGAGGAAGTGCACACTGTCCTCACAACAATAGAATCAATTTCTGTGTAGTAGAAGAGCTGATTCTGGATGTTTTTGCATTCTAAATTTCTTAGGAATGTAATGTTTGCTAGTCTTCTTGTCTTCTTTGATGTGAAAGAA

mRNA sequence

ATGCTCGTGCTTACTGCTTACCGCCGCCATCGATGCTCGCCTGTAGCCTCTCCTAGTCTCCTCTTGTGCTCGTGCTTACCACCGCTGTGGGTACTTGCCGTTCTTGTTCTTATAGACCCAACATCTGAAGGCAAACTTGGATTTGATAATGTGAAGGTGCTTGCATACATTGTTCTCGCTATTTTAGCTCCTGTTTTGGCCACTAACATAATCAGGATTTTTGCATGA

Coding sequence (CDS)

ATGCTCGTGCTTACTGCTTACCGCCGCCATCGATGCTCGCCTGTAGCCTCTCCTAGTCTCCTCTTGTGCTCGTGCTTACCACCGCTGTGGGTACTTGCCGTTCTTGTTCTTATAGACCCAACATCTGAAGGCAAACTTGGATTTGATAATGTGAAGGTGCTTGCATACATTGTTCTCGCTATTTTAGCTCCTGTTTTGGCCACTAACATAATCAGGATTTTTGCATGA

Protein sequence

MLVLTAYRRHRCSPVASPSLLLCSCLPPLWVLAVLVLIDPTSEGKLGFDNVKVLAYIVLAILAPVLATNIIRIFA
Homology
[Close]
BLAST of Spg037461 vs. NCBI nr
Match: XP_022982770.1 (protein SIEL [Cucurbita maxima] >XP_022982771.1 protein SIEL [Cucurbita maxima])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 38  IDPTSEGKLGFDNVKVLAYIVLAILAPVLATNIIRI 74
           IDP SEGKLGFD+VKV+AYIVLAI APVL T+ +RI
Sbjct: 357 IDPASEGKLGFDSVKVMAYIVLAISAPVLDTHSLRI 392

[Close]
BLAST of Spg037461 vs. NCBI nr
Match: KAG7017202.1 (Protein SIEL [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 38  IDPTSEGKLGFDNVKVLAYIVLAILAPVLATNIIRI 74
           IDP SEGKLGFD+VKV+AYIVLAI APVL T+ +RI
Sbjct: 357 IDPASEGKLGFDSVKVIAYIVLAISAPVLDTHSLRI 392

[Close]
BLAST of Spg037461 vs. NCBI nr
Match: KAG6580448.1 (Protein SIEL, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 38  IDPTSEGKLGFDNVKVLAYIVLAILAPVLATNIIRI 74
           IDP SEGKLGFD+VKV+AYIVLAI APVL T+ +RI
Sbjct: 213 IDPASEGKLGFDSVKVIAYIVLAISAPVLDTHSLRI 248

[Close]
BLAST of Spg037461 vs. NCBI nr
Match: XP_022934308.1 (protein SIEL [Cucurbita moschata] >XP_022934309.1 protein SIEL [Cucurbita moschata])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 38  IDPTSEGKLGFDNVKVLAYIVLAILAPVLATNIIRI 74
           IDP SEGKLGFD+VKV+AYIVLAI APVL T+ +RI
Sbjct: 357 IDPASEGKLGFDSVKVIAYIVLAISAPVLDTHSLRI 392

[Close]
BLAST of Spg037461 vs. ExPASy TrEMBL
Match: A0A6J1J0A1 (protein SIEL OS=Cucurbita maxima OX=3661 GN=LOC111481532 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 38  IDPTSEGKLGFDNVKVLAYIVLAILAPVLATNIIRI 74
           IDP SEGKLGFD+VKV+AYIVLAI APVL T+ +RI
Sbjct: 357 IDPASEGKLGFDSVKVMAYIVLAISAPVLDTHSLRI 392

[Close]
BLAST of Spg037461 vs. ExPASy TrEMBL
Match: A0A6J1F7A9 (protein SIEL OS=Cucurbita moschata OX=3662 GN=LOC111441512 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 38  IDPTSEGKLGFDNVKVLAYIVLAILAPVLATNIIRI 74
           IDP SEGKLGFD+VKV+AYIVLAI APVL T+ +RI
Sbjct: 357 IDPASEGKLGFDSVKVIAYIVLAISAPVLDTHSLRI 392

The following BLAST results are available for this feature:
BLAST of Spg037461 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022982770.14.0e-0477.78protein SIEL [Cucurbita maxima] >XP_022982771.1 protein SIEL [Cucurbita maxima][more]
KAG7017202.14.0e-0477.78Protein SIEL [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6580448.14.0e-0477.78Protein SIEL, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022934308.14.0e-0477.78protein SIEL [Cucurbita moschata] >XP_022934309.1 protein SIEL [Cucurbita moscha... [more]
BLAST of Spg037461 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg037461 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J0A12.0e-0477.78protein SIEL OS=Cucurbita maxima OX=3661 GN=LOC111481532 PE=4 SV=1[more]
A0A6J1F7A92.0e-0477.78protein SIEL OS=Cucurbita moschata OX=3662 GN=LOC111441512 PE=4 SV=1[more]
BLAST of Spg037461 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037461.1Spg037461.1mRNA