Spg037444 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037444
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationscaffold11: 31268487 .. 31269901 (-)
RNA-Seq ExpressionSpg037444
SyntenySpg037444
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAACAAAACAAAAAATCTACCCCTAGCGCAGAGCCTCCCATTTGAACTGAGTTTCTCGCAAAAGGGCGGTCGCCGGTGGAGGAGATGAAATCTATTGTAATGGGTCGTCTAGAATTCCATTTTCCTCAATTGGGTCTCCGCCAAAACCACACAAACCCAGGCGTCCATTGTTGTACGGCAGCTCCACCTCCAAATATCACCTGCGGCCTCAGGAAAGGCCTTAGGAAGCCCTTGGGGAGGTCAAGGGTGCCCTCCACTGAGGCCATTCAGGCAGTTCAGTCCCTCAAGCTCGCTAAATCCGCCTCAAAAATGGAGGACGTAATCAATAGCAAACTCAGCAGATTGCTGAAAGCAGACTTGTTTGATGCTCTGACTGAATTACAGAGACAAAATGAACTGGAACTATCGCTCCAGGTACTGCTTAACTACTGTTTATCGTCTGAGGATACTGTAAAATCCAGATGCCTTATCCTTAAAGTTATGAAAATGTTATAATTATACCTTGAATTCTCTTAGTGGCTGGCTTTAGTTGCAATGATTTCATAAGTTGGAGAGTTTAAGTCGATAGCAGGGTTGTTTAGAATTCAGGGTTTAGGGTTTAATGGTAACAACTTTTTAAATGAGCATAATTAATGCGTTTCTCAAGTTACAACTAACGAAGGTTTGCAAAAGTTTGGAGGTAATTGCTCAAATTAAAAGTTGGATGGTGTGATTGTAACTGTATTTTTGCATTTTGTTTGGCTATCCTACTAACTATTGCGTTATGCACTAAAGAAAATAGATCTCTGTAAACTTGGTTTGATTTAAGAATGTCTGTGGTTTGTTATTTGGTTGGATTTTTTCCTTTGCAAGAGCTCCAATGCTTTGACATTCTGATCGAAAAAGTTGACCGGAATGATACATTTGATTCTCCTCTGCAGCCTGTAGTGTTCCTGCCACTATAAGTTTTATTCCATCTTAACTGAATTCAGGCTTTAGGTCTTTAAATTTATGCGTGATGAAGATTGGGTCGAGCCAGATATAACCTTGTACCATGGGATGATTCTGATGTTGGGAAAGAACAAACTGATTGAAATGGCTGAAGAGATCTTCCATGAGTTAAAAAAGGATGGCTTAGAACCAGACACAAGAGCTTTTAATGAGATGATGGGAGCATATTTGCAAGTGGGCATGGTCGAAAGAGCGGTTGATATGTATGAATTAATGAAAGCATCAGGTTGTACTCCAGATAAACTGACTTTCAAGATTTTGATCAAGAATCTCGAGAAGTTTGGGGAAGAGTTTGCTGAAGTGGTGAAGAAAGAATGTGCTGAGTACTTGGATTCTCCTGAGAAGTTCCTCGACAATGTCGAACGGAGACTCGTAAAAGATCGAATTTCTTAA

mRNA sequence

ATGAAATCTATTGTAATGGGTCGTCTAGAATTCCATTTTCCTCAATTGGGTCTCCGCCAAAACCACACAAACCCAGGCGTCCATTGTTGTACGGCAGCTCCACCTCCAAATATCACCTGCGGCCTCAGGAAAGGCCTTAGGAAGCCCTTGGGGAGGTCAAGGGTGCCCTCCACTGAGGCCATTCAGGCAGTTCAGTCCCTCAAGCTCGCTAAATCCGCCTCAAAAATGGAGGACGTAATCAATAGCAAACTCAGCAGATTGCTGAAAGCAGACTTGTTTGATGCTCTGACTGAATTACAGAGACAAAATGAACTGGAACTATCGCTCCAGGTCTTTAAATTTATGCGTGATGAAGATTGGGTCGAGCCAGATATAACCTTGTACCATGGGATGATTCTGATGTTGGGAAAGAACAAACTGATTGAAATGGCTGAAGAGATCTTCCATGAGTTAAAAAAGGATGGCTTAGAACCAGACACAAGAGCTTTTAATGAGATGATGGGAGCATATTTGCAAGTGGGCATGGTCGAAAGAGCGGTTGATATGTATGAATTAATGAAAGCATCAGGTTGTACTCCAGATAAACTGACTTTCAAGATTTTGATCAAGAATCTCGAGAAGTTTGGGGAAGAGTTTGCTGAAGTGGTGAAGAAAGAATGTGCTGAGTACTTGGATTCTCCTGAGAAGTTCCTCGACAATGTCGAACGGAGACTCGTAAAAGATCGAATTTCTTAA

Coding sequence (CDS)

ATGAAATCTATTGTAATGGGTCGTCTAGAATTCCATTTTCCTCAATTGGGTCTCCGCCAAAACCACACAAACCCAGGCGTCCATTGTTGTACGGCAGCTCCACCTCCAAATATCACCTGCGGCCTCAGGAAAGGCCTTAGGAAGCCCTTGGGGAGGTCAAGGGTGCCCTCCACTGAGGCCATTCAGGCAGTTCAGTCCCTCAAGCTCGCTAAATCCGCCTCAAAAATGGAGGACGTAATCAATAGCAAACTCAGCAGATTGCTGAAAGCAGACTTGTTTGATGCTCTGACTGAATTACAGAGACAAAATGAACTGGAACTATCGCTCCAGGTCTTTAAATTTATGCGTGATGAAGATTGGGTCGAGCCAGATATAACCTTGTACCATGGGATGATTCTGATGTTGGGAAAGAACAAACTGATTGAAATGGCTGAAGAGATCTTCCATGAGTTAAAAAAGGATGGCTTAGAACCAGACACAAGAGCTTTTAATGAGATGATGGGAGCATATTTGCAAGTGGGCATGGTCGAAAGAGCGGTTGATATGTATGAATTAATGAAAGCATCAGGTTGTACTCCAGATAAACTGACTTTCAAGATTTTGATCAAGAATCTCGAGAAGTTTGGGGAAGAGTTTGCTGAAGTGGTGAAGAAAGAATGTGCTGAGTACTTGGATTCTCCTGAGAAGTTCCTCGACAATGTCGAACGGAGACTCGTAAAAGATCGAATTTCTTAA

Protein sequence

MKSIVMGRLEFHFPQLGLRQNHTNPGVHCCTAAPPPNITCGLRKGLRKPLGRSRVPSTEAIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFMRDEDWVEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQVGMVERAVDMYELMKASGCTPDKLTFKILIKNLEKFGEEFAEVVKKECAEYLDSPEKFLDNVERRLVKDRIS
Homology
[Close]
BLAST of Spg037444 vs. NCBI nr
Match: XP_038878176.1 (pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida] >XP_038878177.1 pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida])

HSP 1 Score: 408.7 bits (1049), Expect = 3.6e-110
Identity = 204/237 (86.08%), Postives = 220/237 (92.83%), Query Frame = 0 

Query: 1   MKSIVMGRLEFHFPQLGLRQNHTNPGVHCCTAAPPPNITCGLRKGLRKPLGRSRVPSTEA 60
           MKS +MG L+FHFPQLGLRQ+ TNP +HCCTAAPPPNI CGLRKGLRKPLGRSRVPS EA
Sbjct: 1   MKSTLMGSLQFHFPQLGLRQDLTNPSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSIEA 60

Query: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFMRDEDW 120
           IQAVQSLKLAKS SKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKF+++E+W
Sbjct: 61  IQAVQSLKLAKSTSKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFIQNEEW 120

Query: 121 VEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQVGMVERAV 180
            EPD+ LYHGMILM GKNK+IEMAEEIFH+LKKDGLEPD RAFNEMMGAYLQV MVERAV
Sbjct: 121 YEPDLRLYHGMILMTGKNKMIEMAEEIFHKLKKDGLEPDIRAFNEMMGAYLQVDMVERAV 180

Query: 181 DMYELMKASGCTPDKLTFKILIKNLEKFGEEFAEVVKKECAEYLDSPEKFLDNVERR 238
           + YELMKASGCTPDKLTFKILIKNLEKF EEFA VVKKEC  YLDSPEKFL++VE++
Sbjct: 181 ETYELMKASGCTPDKLTFKILIKNLEKFREEFAAVVKKECNVYLDSPEKFLNDVEQK 237

[Close]
BLAST of Spg037444 vs. NCBI nr
Match: XP_023527118.1 (pentatricopeptide repeat-containing protein At1g62350-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 407.9 bits (1047), Expect = 6.1e-110
Identity = 202/243 (83.13%), Postives = 223/243 (91.77%), Query Frame = 0 

Query: 1   MKSIVMGRLEFHFPQLGLRQNHTNPGVHCCTAAPPPNITCGLRKGLRKPLGRSRVPSTEA 60
           MKS +MGRL+ HFPQLG RQN TNP +HCCTA PPPNI CGLRKG RKPLG+SRVPSTE+
Sbjct: 1   MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPNIICGLRKGQRKPLGKSRVPSTES 60

Query: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFMRDEDW 120
           IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDAL ELQRQNELELSLQVFKFMR+E+W
Sbjct: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEW 120

Query: 121 VEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQVGMVERAV 180
            EPD+ LYH MI M+GKNK+IEMAEE+FHELK+DGLEPDTRAFNEMMGAY+QV MVERAV
Sbjct: 121 YEPDLNLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYMQVDMVERAV 180

Query: 181 DMYELMKASGCTPDKLTFKILIKNLEKFGEEFAEVVKKECAEYLDSPEKFLDNVERRLVK 240
           + YELMKASGC PDKLTFKILIKNLE+F EEFA VVKKECAE+LDSPEKFL +VE++L+K
Sbjct: 181 ETYELMKASGCIPDKLTFKILIKNLERFREEFAAVVKKECAEFLDSPEKFLRDVEQKLMK 240

Query: 241 DRI 244
            +I
Sbjct: 241 VQI 243

[Close]
BLAST of Spg037444 vs. NCBI nr
Match: XP_022980054.1 (pentatricopeptide repeat-containing protein At1g62350-like [Cucurbita maxima])

HSP 1 Score: 405.6 bits (1041), Expect = 3.0e-109
Identity = 201/243 (82.72%), Postives = 222/243 (91.36%), Query Frame = 0 

Query: 1   MKSIVMGRLEFHFPQLGLRQNHTNPGVHCCTAAPPPNITCGLRKGLRKPLGRSRVPSTEA 60
           MKS +MGRL+ H PQLG RQN TNP +HCCTA PPPNI CGLRKG RKPLG+SRVPSTE+
Sbjct: 1   MKSTLMGRLQLHLPQLGFRQNLTNPTLHCCTAGPPPNIICGLRKGQRKPLGKSRVPSTES 60

Query: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFMRDEDW 120
           IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDAL ELQRQNELELSLQVFKFMR+E+W
Sbjct: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEW 120

Query: 121 VEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQVGMVERAV 180
            EPD+ LYH MI M+GKNK+IEMAEE+FH+ K+DGLEPDTRAFNEMMGAYLQV MVERAV
Sbjct: 121 YEPDLNLYHVMIQMMGKNKMIEMAEEVFHDFKRDGLEPDTRAFNEMMGAYLQVDMVERAV 180

Query: 181 DMYELMKASGCTPDKLTFKILIKNLEKFGEEFAEVVKKECAEYLDSPEKFLDNVERRLVK 240
           + YELMKASGCTPDKLTFKILIKNLE+F EEFA VVKKECAE+LDSPEKFL +VE++L+K
Sbjct: 181 ETYELMKASGCTPDKLTFKILIKNLERFREEFAAVVKKECAEFLDSPEKFLRDVEQKLMK 240

Query: 241 DRI 244
            +I
Sbjct: 241 LQI 243

[Close]
BLAST of Spg037444 vs. NCBI nr
Match: KAG6582003.1 (hypothetical protein SDJN03_22005, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018426.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 398.7 bits (1023), Expect = 3.7e-107
Identity = 197/231 (85.28%), Postives = 214/231 (92.64%), Query Frame = 0 

Query: 1   MKSIVMGRLEFHFPQLGLRQNHTNPGVHCCTAAPPPNITCGLRKGLRKPLGRSRVPSTEA 60
           MKS +MGRL+ HFPQLG RQN TNP +HCCTA PPP+I CGLRKG RKPLG+SRVPSTE+
Sbjct: 1   MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTES 60

Query: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFMRDEDW 120
           IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDAL ELQRQNELELSLQVFKFMR+E+W
Sbjct: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEW 120

Query: 121 VEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQVGMVERAV 180
            EPD++LYH MI M+GKNK+IEMAEE+FHELK+DGLEPDTRAFNEMMGAYLQV MVERAV
Sbjct: 121 YEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAV 180

Query: 181 DMYELMKASGCTPDKLTFKILIKNLEKFGEEFAEVVKKECAEYLDSPEKFL 232
           + YELMKASGC PDKLTFKILIKNLE+F EEFA VVKKECAE+LDSPEKFL
Sbjct: 181 ETYELMKASGCIPDKLTFKILIKNLERFREEFAAVVKKECAEFLDSPEKFL 231

[Close]
BLAST of Spg037444 vs. NCBI nr
Match: XP_022955796.1 (pentatricopeptide repeat-containing protein At1g62350-like [Cucurbita moschata])

HSP 1 Score: 396.4 bits (1017), Expect = 1.8e-106
Identity = 197/237 (83.12%), Postives = 214/237 (90.30%), Query Frame = 0 

Query: 1   MKSIVMGRLEFHFPQLGLRQNHTNPGVHCCTAAPPPNITCGLRKGLRKPLGRSRVPSTEA 60
           MKS +MGRL+ HFPQLG RQN TNP +HCCTA PPP+  CGLRKG RKPLG+SRVPSTE+
Sbjct: 1   MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDTICGLRKGQRKPLGKSRVPSTES 60

Query: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFMRDEDW 120
           IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDAL ELQRQNELELSLQVFKFMR+E+W
Sbjct: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEW 120

Query: 121 VEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQVGMVERAV 180
            EPD+ LYH MI M+GKNK+IEMAEE+FHELK+DGLEPDTRAFNEMMGAYLQV MVERAV
Sbjct: 121 YEPDLNLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAV 180

Query: 181 DMYELMKASGCTPDKLTFKILIKNLEKFGEEFAEVVKKECAEYLDSPEKFLDNVERR 238
           + YELMKASGC PDKLTFKILIKNLE+F EEFA VVKKECAE+LDSPEKFL  +  R
Sbjct: 181 ETYELMKASGCIPDKLTFKILIKNLERFREEFAAVVKKECAEFLDSPEKFLRGMLNR 237

[Close]
BLAST of Spg037444 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.8e-19
Identity = 58/192 (30.21%), Postives = 113/192 (58.85%), Query Frame = 0 

Query: 47  RKPLGR-SRVPSTEAIQAVQSLK-LAKSASKMEDVINSKLSRLLKADLFDALTELQRQNE 106
           R PL R  ++   EA+  +  LK L +   K++  I + + RLLK D+   + EL+RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 107 LELSLQVFKFMRDEDWVEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFN 166
             L++++F+ ++ ++W +PD+ +Y  +I+ L K+K ++ A  ++ ++KK+ L PD++ + 
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYT 182

Query: 167 EMMGAYLQVGMVERAVDMYELMKASGCTPDKLTFKILIKNL-------EKFGEEFAEVVK 226
           E++  +L+ G    A+++YE M  S   P++L F++L+K L        K  ++F E+  
Sbjct: 183 EVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFP 242

Query: 227 KECAEYLDSPEK 230
           ++ A   D PE+
Sbjct: 243 EKHA--YDPPEE 252

[Close]
BLAST of Spg037444 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-17
Identity = 57/192 (29.69%), Postives = 104/192 (54.17%), Query Frame = 0 

Query: 57  STEAIQAVQSLKLAKSAS-KMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFM 116
           S E + A + LK  ++ S +++  I S +SRLLK+DL   L E QRQN++ L +++++ +
Sbjct: 2   SKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEVV 61

Query: 117 RDEDWVEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQVGM 176
           R E W  PD+  Y  M++ML +NK ++  ++++ +LKK+ +  D   F +++  +L   +
Sbjct: 62  RREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNEL 121

Query: 177 VERAVDMYELMKASGCTPDKLTFKILIKNLEKFGEEFAEVVKKECAEYL------DSPEK 236
              A+ +Y  M+ S   P  L F++++K L  +  E  E VK +  E        D PE 
Sbjct: 122 PLEAMRLYGEMRESPDRPLSLPFRVILKGLVPY-PELREKVKDDFLELFPGMIVYDPPED 181

Query: 237 FLDNVERRLVKD 242
             ++ +     D
Sbjct: 182 ICEDSDEEARTD 192

[Close]
BLAST of Spg037444 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-12
Identity = 46/153 (30.07%), Postives = 83/153 (54.25%), Query Frame = 0 

Query: 53  SRVPSTEAIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVF 112
           +++ S +AI  +   +  KS  + +      L R +   L + +T L+     E ++QVF
Sbjct: 82  TKIASRKAISIILRREATKSIIEKKKGSKKLLPRTVLESLHERITALR----WESAIQVF 141

Query: 113 KFMRDEDWVEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQ 172
           + +R++ W +P++ +Y  +I+MLGK K  E A E+F E+  +G   +   +  ++ AY +
Sbjct: 142 ELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSR 201

Query: 173 VGMVERAVDMYELMKAS-GCTPDKLTFKILIKN 205
            G  + A  + E MK+S  C PD  T+ ILIK+
Sbjct: 202 SGRFDAAFTLLERMKSSHNCQPDVHTYSILIKS 230

[Close]
BLAST of Spg037444 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.6e-12
Identity = 57/179 (31.84%), Postives = 89/179 (49.72%), Query Frame = 0 

Query: 37  NITCGLRKGLRKPLGRSRVPSTEAIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDAL 96
           +I CG R   R PL + R+ STEAIQ++QSLK A        +    L RL+K+DL   L
Sbjct: 30  SIRCGPRDN-RGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTLRPLRRLIKSDLISVL 89

Query: 97  TELQRQNELELSLQVFKFMRDEDWVEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGL 156
            EL RQ+   L++ V   +R E +   D+ LY  ++  L +NK  +  + +  E+     
Sbjct: 90  RELLRQDYCTLAVHVLSTLRTE-YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQ 149

Query: 157 EPDTRAFNEMMGAYLQVGMVERAVDMYELMKASG-----CTPDKLTFKILIKNLEKFGE 211
             D +A  +++ A +     E  V +Y LM+ SG        D+   ++L K L + GE
Sbjct: 150 RSDDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

[Close]
BLAST of Spg037444 vs. ExPASy Swiss-Prot
Match: O82178 (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX=3702 GN=At2g35130 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-10
Identity = 34/99 (34.34%), Postives = 57/99 (57.58%), Query Frame = 0 

Query: 122 EPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQVGMVERAVD 181
           +P+I  Y  ++    +  L E AEEIF +L++DGLEPD   +N +M +Y + G    A +
Sbjct: 296 KPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAE 355

Query: 182 MYELMKASGCTPDKLTFKILIKNLEKFG-EEFAEVVKKE 220
           ++ LM+  GC PD+ ++ I++    + G    AE V +E
Sbjct: 356 IFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEE 394

[Close]
BLAST of Spg037444 vs. ExPASy TrEMBL
Match: A0A6J1IY98 (pentatricopeptide repeat-containing protein At1g62350-like OS=Cucurbita maxima OX=3661 GN=LOC111479570 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.5e-109
Identity = 201/243 (82.72%), Postives = 222/243 (91.36%), Query Frame = 0 

Query: 1   MKSIVMGRLEFHFPQLGLRQNHTNPGVHCCTAAPPPNITCGLRKGLRKPLGRSRVPSTEA 60
           MKS +MGRL+ H PQLG RQN TNP +HCCTA PPPNI CGLRKG RKPLG+SRVPSTE+
Sbjct: 1   MKSTLMGRLQLHLPQLGFRQNLTNPTLHCCTAGPPPNIICGLRKGQRKPLGKSRVPSTES 60

Query: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFMRDEDW 120
           IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDAL ELQRQNELELSLQVFKFMR+E+W
Sbjct: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEW 120

Query: 121 VEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQVGMVERAV 180
            EPD+ LYH MI M+GKNK+IEMAEE+FH+ K+DGLEPDTRAFNEMMGAYLQV MVERAV
Sbjct: 121 YEPDLNLYHVMIQMMGKNKMIEMAEEVFHDFKRDGLEPDTRAFNEMMGAYLQVDMVERAV 180

Query: 181 DMYELMKASGCTPDKLTFKILIKNLEKFGEEFAEVVKKECAEYLDSPEKFLDNVERRLVK 240
           + YELMKASGCTPDKLTFKILIKNLE+F EEFA VVKKECAE+LDSPEKFL +VE++L+K
Sbjct: 181 ETYELMKASGCTPDKLTFKILIKNLERFREEFAAVVKKECAEFLDSPEKFLRDVEQKLMK 240

Query: 241 DRI 244
            +I
Sbjct: 241 LQI 243

[Close]
BLAST of Spg037444 vs. ExPASy TrEMBL
Match: A0A6J1GUU8 (pentatricopeptide repeat-containing protein At1g62350-like OS=Cucurbita moschata OX=3662 GN=LOC111457678 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 8.9e-107
Identity = 197/237 (83.12%), Postives = 214/237 (90.30%), Query Frame = 0 

Query: 1   MKSIVMGRLEFHFPQLGLRQNHTNPGVHCCTAAPPPNITCGLRKGLRKPLGRSRVPSTEA 60
           MKS +MGRL+ HFPQLG RQN TNP +HCCTA PPP+  CGLRKG RKPLG+SRVPSTE+
Sbjct: 1   MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDTICGLRKGQRKPLGKSRVPSTES 60

Query: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFMRDEDW 120
           IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDAL ELQRQNELELSLQVFKFMR+E+W
Sbjct: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEW 120

Query: 121 VEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQVGMVERAV 180
            EPD+ LYH MI M+GKNK+IEMAEE+FHELK+DGLEPDTRAFNEMMGAYLQV MVERAV
Sbjct: 121 YEPDLNLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAV 180

Query: 181 DMYELMKASGCTPDKLTFKILIKNLEKFGEEFAEVVKKECAEYLDSPEKFLDNVERR 238
           + YELMKASGC PDKLTFKILIKNLE+F EEFA VVKKECAE+LDSPEKFL  +  R
Sbjct: 181 ETYELMKASGCIPDKLTFKILIKNLERFREEFAAVVKKECAEFLDSPEKFLRGMLNR 237

[Close]
BLAST of Spg037444 vs. ExPASy TrEMBL
Match: A0A5A7TQZ8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002830 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 4.4e-106
Identity = 193/238 (81.09%), Postives = 216/238 (90.76%), Query Frame = 0 

Query: 1   MKSIVMGRLEFHFPQLGLRQNHTNPGVHCCTAAPPPNITCGLRKGLRKPLGRSRVPSTEA 60
           MKS +MGRL+ HFPQLGLRQN TN  +HCCTAAPPPNI CGLRKGL+KPLGRSRVPS EA
Sbjct: 1   MKSTLMGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFMRDEDW 120
           IQAVQSLKLAK  SKMEDVIN+KLSRLLKADLFDALTELQRQNELELSLQVFKFM++E+W
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 VEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQVGMVERAV 180
            EPD+ LYHGMI+M+GKNK+IEMAEE+FH+L+KDGLEPDTRAFNEMMGAYLQV M+ERA 
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 DMYELMKASGCTPDKLTFKILIKNLEKFGEEFAEVVKKECAEYLDSPEKFLDNVERRL 239
           D Y LM ASGCTPDKLTFKILIKNLEKF EEFA VVKK+C EYLD+P+KF ++  ++L
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCHEYLDNPQKFFNDEGQKL 238

[Close]
BLAST of Spg037444 vs. ExPASy TrEMBL
Match: A0A5D3CZ95 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001960 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 9.8e-106
Identity = 192/238 (80.67%), Postives = 216/238 (90.76%), Query Frame = 0 

Query: 1   MKSIVMGRLEFHFPQLGLRQNHTNPGVHCCTAAPPPNITCGLRKGLRKPLGRSRVPSTEA 60
           MKS +MGRL+ HFP+LGLRQN TN  +HCCTAAPPPNI CGLRKGL+KPLGRSRVPS EA
Sbjct: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFMRDEDW 120
           IQAVQSLKLAK  SKMEDVIN+KLSRLLKADLFDALTELQRQNELELSLQVFKFM++E+W
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 VEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQVGMVERAV 180
            EPD+ LYHGMI+M+GKNK+IEMAEE+FH+L+KDGLEPDTRAFNEMMGAYLQV M+ERA 
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 DMYELMKASGCTPDKLTFKILIKNLEKFGEEFAEVVKKECAEYLDSPEKFLDNVERRL 239
           D Y LM ASGCTPDKLTFKILIKNLEKF EEFA VVKK+C EYLD+P+KF ++  ++L
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKL 238

[Close]
BLAST of Spg037444 vs. ExPASy TrEMBL
Match: A0A1S3BX97 (pentatricopeptide repeat-containing protein At1g62350-like OS=Cucumis melo OX=3656 GN=LOC103494600 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 9.8e-106
Identity = 192/238 (80.67%), Postives = 216/238 (90.76%), Query Frame = 0 

Query: 1   MKSIVMGRLEFHFPQLGLRQNHTNPGVHCCTAAPPPNITCGLRKGLRKPLGRSRVPSTEA 60
           MKS +MGRL+ HFP+LGLRQN TN  +HCCTAAPPPNI CGLRKGL+KPLGRSRVPS EA
Sbjct: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFMRDEDW 120
           IQAVQSLKLAK  SKMEDVIN+KLSRLLKADLFDALTELQRQNELELSLQVFKFM++E+W
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 VEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQVGMVERAV 180
            EPD+ LYHGMI+M+GKNK+IEMAEE+FH+L+KDGLEPDTRAFNEMMGAYLQV M+ERA 
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 DMYELMKASGCTPDKLTFKILIKNLEKFGEEFAEVVKKECAEYLDSPEKFLDNVERRL 239
           D Y LM ASGCTPDKLTFKILIKNLEKF EEFA VVKK+C EYLD+P+KF ++  ++L
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKL 238

[Close]
BLAST of Spg037444 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-24
Identity = 71/207 (34.30%), Postives = 113/207 (54.59%), Query Frame = 0 

Query: 47  RKPLGRSRVPSTEAIQAVQSLKLA----------------KSASKMEDVINSKLSRLLKA 106
           RKPL R R+ S EAIQAVQ+LK A                 S++ ++ VI SK  RLLK 
Sbjct: 496 RKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLKF 555

Query: 107 DLFDALTELQRQNELELSLQVFKFMRDEDWVEPDITLYHGMILMLGKNKLIEMAEEIFHE 166
           D+   L EL RQNE  L+L+VF+ +R E W +P + +Y  MI ++  N L+E    ++  
Sbjct: 556 DMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYSA 615

Query: 167 LKKD-GLEPDTRAFNEMMGAYLQVGMVERAVDMYELMKASGCTPDKLTFKILIKNLEKFG 226
           +K + GL  +   FN ++   L   + +  +D Y  M++ G  PD+ +F++L+  LE  G
Sbjct: 616 MKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLGLESNG 675

Query: 227 E-EFAEVVKKECAEYLDSPEKFLDNVE 236
           E   + +V+++  EY     +F++  E
Sbjct: 676 EMGLSAIVRQDAHEYYGESLEFIEEDE 702

[Close]
BLAST of Spg037444 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 6.2e-20
Identity = 58/192 (30.21%), Postives = 113/192 (58.85%), Query Frame = 0 

Query: 47  RKPLGR-SRVPSTEAIQAVQSLK-LAKSASKMEDVINSKLSRLLKADLFDALTELQRQNE 106
           R PL R  ++   EA+  +  LK L +   K++  I + + RLLK D+   + EL+RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 107 LELSLQVFKFMRDEDWVEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFN 166
             L++++F+ ++ ++W +PD+ +Y  +I+ L K+K ++ A  ++ ++KK+ L PD++ + 
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYT 182

Query: 167 EMMGAYLQVGMVERAVDMYELMKASGCTPDKLTFKILIKNL-------EKFGEEFAEVVK 226
           E++  +L+ G    A+++YE M  S   P++L F++L+K L        K  ++F E+  
Sbjct: 183 EVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFP 242

Query: 227 KECAEYLDSPEK 230
           ++ A   D PE+
Sbjct: 243 EKHA--YDPPEE 252

[Close]
BLAST of Spg037444 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 91.7 bits (226), Expect = 9.0e-19
Identity = 57/192 (29.69%), Postives = 104/192 (54.17%), Query Frame = 0 

Query: 57  STEAIQAVQSLKLAKSAS-KMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFM 116
           S E + A + LK  ++ S +++  I S +SRLLK+DL   L E QRQN++ L +++++ +
Sbjct: 2   SKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEVV 61

Query: 117 RDEDWVEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQVGM 176
           R E W  PD+  Y  M++ML +NK ++  ++++ +LKK+ +  D   F +++  +L   +
Sbjct: 62  RREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNEL 121

Query: 177 VERAVDMYELMKASGCTPDKLTFKILIKNLEKFGEEFAEVVKKECAEYL------DSPEK 236
              A+ +Y  M+ S   P  L F++++K L  +  E  E VK +  E        D PE 
Sbjct: 122 PLEAMRLYGEMRESPDRPLSLPFRVILKGLVPY-PELREKVKDDFLELFPGMIVYDPPED 181

Query: 237 FLDNVERRLVKD 242
             ++ +     D
Sbjct: 182 ICEDSDEEARTD 192

[Close]
BLAST of Spg037444 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-13
Identity = 46/153 (30.07%), Postives = 83/153 (54.25%), Query Frame = 0 

Query: 53  SRVPSTEAIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVF 112
           +++ S +AI  +   +  KS  + +      L R +   L + +T L+     E ++QVF
Sbjct: 82  TKIASRKAISIILRREATKSIIEKKKGSKKLLPRTVLESLHERITALR----WESAIQVF 141

Query: 113 KFMRDEDWVEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGLEPDTRAFNEMMGAYLQ 172
           + +R++ W +P++ +Y  +I+MLGK K  E A E+F E+  +G   +   +  ++ AY +
Sbjct: 142 ELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSR 201

Query: 173 VGMVERAVDMYELMKAS-GCTPDKLTFKILIKN 205
            G  + A  + E MK+S  C PD  T+ ILIK+
Sbjct: 202 SGRFDAAFTLLERMKSSHNCQPDVHTYSILIKS 230

[Close]
BLAST of Spg037444 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-13
Identity = 57/179 (31.84%), Postives = 89/179 (49.72%), Query Frame = 0 

Query: 37  NITCGLRKGLRKPLGRSRVPSTEAIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDAL 96
           +I CG R   R PL + R+ STEAIQ++QSLK A        +    L RL+K+DL   L
Sbjct: 30  SIRCGPRDN-RGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTLRPLRRLIKSDLISVL 89

Query: 97  TELQRQNELELSLQVFKFMRDEDWVEPDITLYHGMILMLGKNKLIEMAEEIFHELKKDGL 156
            EL RQ+   L++ V   +R E +   D+ LY  ++  L +NK  +  + +  E+     
Sbjct: 90  RELLRQDYCTLAVHVLSTLRTE-YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQ 149

Query: 157 EPDTRAFNEMMGAYLQVGMVERAVDMYELMKASG-----CTPDKLTFKILIKNLEKFGE 211
             D +A  +++ A +     E  V +Y LM+ SG        D+   ++L K L + GE
Sbjct: 150 RSDDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

The following BLAST results are available for this feature:
BLAST of Spg037444 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038878176.13.6e-11086.08pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida] >... [more]
XP_023527118.16.1e-11083.13pentatricopeptide repeat-containing protein At1g62350-like [Cucurbita pepo subsp... [more]
XP_022980054.13.0e-10982.72pentatricopeptide repeat-containing protein At1g62350-like [Cucurbita maxima][more]
KAG6582003.13.7e-10785.28hypothetical protein SDJN03_22005, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022955796.11.8e-10683.12pentatricopeptide repeat-containing protein At1g62350-like [Cucurbita moschata][more]
BLAST of Spg037444 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STF98.8e-1930.21Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Q1PFH71.3e-1729.69Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX... [more]
Q9FKC32.1e-1230.07Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop... [more]
Q9LVW63.6e-1231.84Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T... [more]
O821781.1e-1034.34Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX... [more]
BLAST of Spg037444 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IY981.5e-10982.72pentatricopeptide repeat-containing protein At1g62350-like OS=Cucurbita maxima O... [more]
A0A6J1GUU88.9e-10783.12pentatricopeptide repeat-containing protein At1g62350-like OS=Cucurbita moschata... [more]
A0A5A7TQZ84.4e-10681.09Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3CZ959.8e-10680.67Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BX979.8e-10680.67pentatricopeptide repeat-containing protein At1g62350-like OS=Cucumis melo OX=36... [more]
BLAST of Spg037444 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G09320.11.1e-2434.30Vacuolar sorting protein 9 (VPS9) domain [more]
AT3G46870.16.2e-2030.21Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G62350.19.0e-1929.69Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G48730.11.5e-1330.07Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G27750.12.5e-1331.84FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 128..156
e-value: 8.9E-4
score: 19.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 128..160
e-value: 7.9E-6
score: 23.7
coord: 162..194
e-value: 2.6E-8
score: 31.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 158..205
e-value: 3.0E-12
score: 46.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 124..158
score: 10.424253
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 159..193
score: 11.728648
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 56..224
e-value: 2.9E-47
score: 162.7
IPR044190Protein THYLAKOID ASSEMBLY 8-likePANTHERPTHR47594PPR CONTAINING PLANT-LIKE PROTEINcoord: 24..237
NoneNo IPR availablePANTHERPTHR47594:SF5PPR CONTAINING PLANT-LIKE PROTEINcoord: 24..237

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037444.1Spg037444.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0000373 Group II intron splicing
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding