Spg037394 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037394
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionKinesin heavy chain-like
Locationscaffold8: 1266324 .. 1268141 (-)
RNA-Seq ExpressionSpg037394
SyntenySpg037394
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATGCTCCAAAGAAGGTTGGGGAAAGGCACAGGAGAAATTTCAAAGGCTTGCATCTAGTAGCTTGAAGACCTATGAGAGGCCGGAGTCCTCTTTGCTCAAATTGTAAAAGAAGGCAAAACATGTGAGGTTCTGGAGGCAAAGAGCGAGGATGAAAAGGACACGTCTTTAAAGACTCAAAACTTGCTTTGGGTTACTCATCTGTGTAAAACCTTTTACGGGAATATGACGATGGTTCTATGAGAGGATGTTCAAAAGCAACAAGGAATGCTTATCTTCGACAAGTGGGCGATTGGTAAATTTGCTGTGAATTTTTTGCCCTAGAATTTTTTCCTTATTGGTAGATGGTCTTTCTTCTATATAAGAAGACCTCGTATTTGATTCAAAGAGTGAGGAGAAATACAATGTTTTAATTTCTTCCCAAAATTCTAGTGTTTTTTTTGTTTATTGAGGTTTATCATCCCCCCCCCCCTCCGAAATGCTCCCTCCTCTCTCCCTTCTCCTCTCCTGGTGCTAGTCTCCACCTCCATTCTCAATCATCTTTTTTCTACCCTCCACCTCCGTTTCTAGCCTTGAATCGCCACTTTTCTCCCCTCCACCTCCATTCTTAGCCTTCACAGTCGTTCGTTACTTATCTGGGAACATTTTCACTAGATTGTTGATCCTTGGTTACATCTCATTCATCACTGCAAGGTTCTTAATTCCTTCTTTTGCATCTGGCAAAAGGAGGATCAATTTTATGCGGAAGATTTCTCAAACAATATGGTATTCCCGCTCTTTGGTTCGCAATTGCGATGGTTTGAAAGCTCCATTGTCGAACTTCTTCACCAACCAGAAGGACGATATTATTCAGGAAATTTCATGATGATTCAGGAATAATTCATCTAATGAAAGTAAAGTCTCAATTAGGATGGTTATTTCGGTGTGTTGTTTGGCCTTCTTCAAGAAAAAAGGATGGCTATCCTTCTCGAAAATGGTGAATGGTACAATTAGAATTTTTTGTGATAGTCCTACCTTTTCTGAAGCATCATCTGTGCCAAAAAGGTTGTCAAAGCTAGCAACTAAGAGTTATGATGAAGTAGATGAGAAACCTTGTAGGTTGCTTTCGAATTCTAGTGATATGGTTTTGAGAAGCAAGAGATCAGATAATTCTGCTGGGCATTATTGGGTTCAAAAGAGTCATGAAGTTTTGCCGCTGAATTGTGATGAACTTTGGGTGGTTTCCAGATTATTTGCTCATAACGAATGGAAAGAAATTGCAGCAACTTTGGAATTTCATTTCAAGACCAAGGTGGTGATCAATCCATTATTTGCTGATAAGGCTTTGATTAAATTTGTTGATGACACTAAGTTTAAAGATTCGAATTCATCAGGAAAATGGCAGGCTTATGGTGATTTTCACTTGCTCATTGAGAAGGTCTAATAGTATCCATAGCAATCCGAGTGTGATAGCGGGGTATGGTGGCTGGATTTCAATTAAAAATCTTCCCCTTGACTATTGGTGTCGCAAGTCTTTTGAAGCTATAGGGGTTTATTTCGGAGGTCTCGTAAGTATCTCTTCTGATTAATTGTTCAGAAGCTCGAATTCAAAGTTAAGCGTAATCTATGTGGTTTTATGTCGCCTACTATTAGAATCAGGGATAAAGTGAGAGGAAATATTTTTCTTCATTTTGGTGATATAGTCGCCTTAGATCCACCTAACATTGTTCGTGGTGATCTTGTGTTAGATGATTTCTCAAATCCCATGGATCTTTTCCGTTCACAGCGGTCATGTTGGATGAAGGAGCTATCAAGACTCCATTGCAAAATGAATTAG

mRNA sequence

ATGACATGCTCCAAAGAAGGTTGGGGAAAGGCACAGGAGAAATTTCAAAGGCTTGCATCTAGTAGCTTGAAGACCTATGAGAGGCCGGAGTCCTCTTTGCTCAAATTGAATAATTCATCTAATGAAAGTAAAGTCTCAATTAGGATGGTTATTTCGGTGTGTTGTTTGGCCTTCTTCAAGAAAAAAGGATGGCTATCCTTCTCGAAAATGGTGAATGGTACAATTAGAATTTTTTGTGATAGTCCTACCTTTTCTGAAGCATCATCTGTGCCAAAAAGGTTGTCAAAGCTAGCAACTAAGAGTTATGATGAAGTAGATGAGAAACCTTGTAGGTTGCTTTCGAATTCTAGTGATATGGTTTTGAGAAGCAAGAGATCAGATAATTCTGCTGGGCATTATTGGGTTCAAAAGAGTCATGAAGTTTTGCCGCTGAATTGTGATGAACTTTGGGTGGTTTCCAGATTATTTGCTCATAACGAATGGAAAGAAATTGCAGCAACTTTGGAATTTCATTTCAAGACCAAGGTGGTGATCAATCCATTATTTGCTGATAAGGCTTTGATTAAATTTGTTGATGACACTAAGTTTAAAGATTCGAATTCATCAGGAAAATGGCAGGCTTATGGTGATTTTCACTTGCTCATTGAGAAGAAGCTCGAATTCAAAGTTAAGCGTAATCTATGTGGTTTTATGTCGCCTACTATTAGAATCAGGGATAAAGTGAGAGGAAATATTTTTCTTCATTTTGGTGATATAGTCGCCTTAGATCCACCTAACATTGTTCGTGGTGATCTTGTGTTAGATGATTTCTCAAATCCCATGGATCTTTTCCGTTCACAGCGGTCATGTTGGATGAAGGAGCTATCAAGACTCCATTGCAAAATGAATTAG

Coding sequence (CDS)

ATGACATGCTCCAAAGAAGGTTGGGGAAAGGCACAGGAGAAATTTCAAAGGCTTGCATCTAGTAGCTTGAAGACCTATGAGAGGCCGGAGTCCTCTTTGCTCAAATTGAATAATTCATCTAATGAAAGTAAAGTCTCAATTAGGATGGTTATTTCGGTGTGTTGTTTGGCCTTCTTCAAGAAAAAAGGATGGCTATCCTTCTCGAAAATGGTGAATGGTACAATTAGAATTTTTTGTGATAGTCCTACCTTTTCTGAAGCATCATCTGTGCCAAAAAGGTTGTCAAAGCTAGCAACTAAGAGTTATGATGAAGTAGATGAGAAACCTTGTAGGTTGCTTTCGAATTCTAGTGATATGGTTTTGAGAAGCAAGAGATCAGATAATTCTGCTGGGCATTATTGGGTTCAAAAGAGTCATGAAGTTTTGCCGCTGAATTGTGATGAACTTTGGGTGGTTTCCAGATTATTTGCTCATAACGAATGGAAAGAAATTGCAGCAACTTTGGAATTTCATTTCAAGACCAAGGTGGTGATCAATCCATTATTTGCTGATAAGGCTTTGATTAAATTTGTTGATGACACTAAGTTTAAAGATTCGAATTCATCAGGAAAATGGCAGGCTTATGGTGATTTTCACTTGCTCATTGAGAAGAAGCTCGAATTCAAAGTTAAGCGTAATCTATGTGGTTTTATGTCGCCTACTATTAGAATCAGGGATAAAGTGAGAGGAAATATTTTTCTTCATTTTGGTGATATAGTCGCCTTAGATCCACCTAACATTGTTCGTGGTGATCTTGTGTTAGATGATTTCTCAAATCCCATGGATCTTTTCCGTTCACAGCGGTCATGTTGGATGAAGGAGCTATCAAGACTCCATTGCAAAATGAATTAG

Protein sequence

MTCSKEGWGKAQEKFQRLASSSLKTYERPESSLLKLNNSSNESKVSIRMVISVCCLAFFKKKGWLSFSKMVNGTIRIFCDSPTFSEASSVPKRLSKLATKSYDEVDEKPCRLLSNSSDMVLRSKRSDNSAGHYWVQKSHEVLPLNCDELWVVSRLFAHNEWKEIAATLEFHFKTKVVINPLFADKALIKFVDDTKFKDSNSSGKWQAYGDFHLLIEKKLEFKVKRNLCGFMSPTIRIRDKVRGNIFLHFGDIVALDPPNIVRGDLVLDDFSNPMDLFRSQRSCWMKELSRLHCKMN
Homology
BLAST of Spg037394 vs. NCBI nr
Match: KAA0047189.1 (hypothetical protein E6C27_scaffold83G00690 [Cucumis melo var. makuwa] >TYK29739.1 hypothetical protein E5676_scaffold1280G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-20
Identity = 63/181 (34.81%), Postives = 92/181 (50.83%), Query Frame = 0

Query: 134 WVQKSHEVLPLNCDELWVVSRLFAHNEWKEIAATLEFHFKTKVVINPLFADKALIKFVDD 193
           WV ++ EV+  N + LW++++LFA ++ ++I   LE +F+ K+VINPLF + ALI  +D+
Sbjct: 51  WVIRNSEVISTNFENLWIITKLFAFDDRRKIRKMLENYFQAKIVINPLFDENALIN-LDE 110

Query: 194 TKFKD-SNSSGKWQAYGDFHLLIEK----------------------------------- 253
              KD   + GKWQ  G F+L  EK                                   
Sbjct: 111 GSIKDLICNEGKWQVLGSFYLKFEKWDKHKYSRPLTMKGYGGWLKIKNLLWITGAGEPSS 170

Query: 254 KLEFKVKRNLCGFMSPTIRIRDKVRGNIFLHFGDIVALDPPNIVRGDLVLDDFSNPMDLF 279
           +   +VK NLCGF+  TI I D  RGNIFL+FGD   L+PP      +++ DF   + L 
Sbjct: 171 EARIQVKHNLCGFVPSTIEIIDPKRGNIFLNFGDFEFLNPPFPTSDTIMVSDFKKSIHLL 230

BLAST of Spg037394 vs. NCBI nr
Match: TYJ99818.1 (kinesin heavy chain-like [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 4.2e-20
Identity = 61/163 (37.42%), Postives = 94/163 (57.67%), Query Frame = 0

Query: 123 SKRSDNSAGHYWVQKSHEVLPLNCDELWVVSRLFAHNEWKEIAATLEFHFKTKVVINPLF 182
           +++SDN     WV ++ EV   N + LW+V+++FA ++W+ I  +LE +F+ K+VINPLF
Sbjct: 154 ARKSDNQG--QWVIRNAEVATTNFESLWIVTKVFAFDDWQMIRKSLEEYFQAKIVINPLF 213

Query: 183 ADKALIKFVDDTKFKDS-NSSGKWQAYGDFHLLIEKKLEFKVKRNLCGFMSPTIRIRDKV 242
            + A I  +D    KD     GKWQA G+  +        +VK+N CGF+  TI I +  
Sbjct: 214 GENAFIS-IDQDSIKDRICEEGKWQAMGEARI--------QVKQNCCGFVPSTIEITNVK 273

Query: 243 RGNIFLHFGDI---VALDPPNIVRGDLVLDDFSNPMDLFRSQR 282
           RGNIF +FGD      L    ++   L++  F+NP DL R ++
Sbjct: 274 RGNIFSNFGDFGFCTLLCQLVVLLCSLMVKHFTNPTDLLRIRK 305

BLAST of Spg037394 vs. NCBI nr
Match: XP_038904899.1 (uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida])

HSP 1 Score: 72.0 bits (175), Expect = 9.6e-09
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 222 KVKRNLCGFMSPTIRIRDKVRGNIFLHFGDIVALDPPNIVRGDLVLDDFSNPMDLFR 279
           KVK NLCGF+  TI + ++ RG+I+L+FGDI   +PP+ V+GDL   DF+NP+DL R
Sbjct: 299 KVKENLCGFVPATIEVSNEKRGSIYLNFGDISTSNPPSKVKGDLFESDFTNPIDLIR 355

BLAST of Spg037394 vs. NCBI nr
Match: TYK28792.1 (pseudouridylate synthase 7-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 2.8e-08
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 214 LIEKKLEFKVKRNLCGFMSPTIRIRDKVRGNIFLHFGDIVALDPPNIVRGDLVLDDFSNP 273
           ++E K++  +K NLCGFM  TI I D+ RG  FL++GDI  L P   V+GDL+L DF NP
Sbjct: 564 VVEAKIQ--IKWNLCGFMPATIEIADENRGTFFLNYGDIEVLCPSPKVKGDLLLKDFFNP 623

Query: 274 MDLFR 279
           +DL R
Sbjct: 624 IDLIR 626

BLAST of Spg037394 vs. NCBI nr
Match: TYK16775.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 5.3e-07
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 0

Query: 207 AYGDFHLLIEKKLEFKVKRNLCGFMSPTIRIRDKVRGNIFLHFGDIVALDPPNIVRGDLV 266
           A+   + +   + + + K NLCGF+  TI I D+  GNIFL+FG I   +PP+ V GDL 
Sbjct: 200 AFETINFINVSEAKIQAKENLCGFIPATIEISDEREGNIFLNFGVISLFNPPSKVLGDLF 259

Query: 267 LDDFSNPMDLFRSQRSCWMKELSRLH 293
             +FSN +D+ R  +    + L ++H
Sbjct: 260 THNFSNSLDIVRLSQVMKDEGLRKVH 285

BLAST of Spg037394 vs. ExPASy TrEMBL
Match: A0A5A7U128 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1280G00090 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.1e-21
Identity = 63/181 (34.81%), Postives = 92/181 (50.83%), Query Frame = 0

Query: 134 WVQKSHEVLPLNCDELWVVSRLFAHNEWKEIAATLEFHFKTKVVINPLFADKALIKFVDD 193
           WV ++ EV+  N + LW++++LFA ++ ++I   LE +F+ K+VINPLF + ALI  +D+
Sbjct: 51  WVIRNSEVISTNFENLWIITKLFAFDDRRKIRKMLENYFQAKIVINPLFDENALIN-LDE 110

Query: 194 TKFKD-SNSSGKWQAYGDFHLLIEK----------------------------------- 253
              KD   + GKWQ  G F+L  EK                                   
Sbjct: 111 GSIKDLICNEGKWQVLGSFYLKFEKWDKHKYSRPLTMKGYGGWLKIKNLLWITGAGEPSS 170

Query: 254 KLEFKVKRNLCGFMSPTIRIRDKVRGNIFLHFGDIVALDPPNIVRGDLVLDDFSNPMDLF 279
           +   +VK NLCGF+  TI I D  RGNIFL+FGD   L+PP      +++ DF   + L 
Sbjct: 171 EARIQVKHNLCGFVPSTIEIIDPKRGNIFLNFGDFEFLNPPFPTSDTIMVSDFKKSIHLL 230

BLAST of Spg037394 vs. ExPASy TrEMBL
Match: A0A5D3BNW8 (Kinesin heavy chain-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00200 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-20
Identity = 61/163 (37.42%), Postives = 94/163 (57.67%), Query Frame = 0

Query: 123 SKRSDNSAGHYWVQKSHEVLPLNCDELWVVSRLFAHNEWKEIAATLEFHFKTKVVINPLF 182
           +++SDN     WV ++ EV   N + LW+V+++FA ++W+ I  +LE +F+ K+VINPLF
Sbjct: 154 ARKSDNQG--QWVIRNAEVATTNFESLWIVTKVFAFDDWQMIRKSLEEYFQAKIVINPLF 213

Query: 183 ADKALIKFVDDTKFKDS-NSSGKWQAYGDFHLLIEKKLEFKVKRNLCGFMSPTIRIRDKV 242
            + A I  +D    KD     GKWQA G+  +        +VK+N CGF+  TI I +  
Sbjct: 214 GENAFIS-IDQDSIKDRICEEGKWQAMGEARI--------QVKQNCCGFVPSTIEITNVK 273

Query: 243 RGNIFLHFGDI---VALDPPNIVRGDLVLDDFSNPMDLFRSQR 282
           RGNIF +FGD      L    ++   L++  F+NP DL R ++
Sbjct: 274 RGNIFSNFGDFGFCTLLCQLVVLLCSLMVKHFTNPTDLLRIRK 305

BLAST of Spg037394 vs. ExPASy TrEMBL
Match: A0A5D3DYX0 (Pseudouridylate synthase 7-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001570 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 214 LIEKKLEFKVKRNLCGFMSPTIRIRDKVRGNIFLHFGDIVALDPPNIVRGDLVLDDFSNP 273
           ++E K++  +K NLCGFM  TI I D+ RG  FL++GDI  L P   V+GDL+L DF NP
Sbjct: 564 VVEAKIQ--IKWNLCGFMPATIEIADENRGTFFLNYGDIEVLCPSPKVKGDLLLKDFFNP 623

Query: 274 MDLFR 279
           +DL R
Sbjct: 624 IDLIR 626

BLAST of Spg037394 vs. ExPASy TrEMBL
Match: A0A5D3CZ35 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00310 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-07
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 0

Query: 207 AYGDFHLLIEKKLEFKVKRNLCGFMSPTIRIRDKVRGNIFLHFGDIVALDPPNIVRGDLV 266
           A+   + +   + + + K NLCGF+  TI I D+  GNIFL+FG I   +PP+ V GDL 
Sbjct: 200 AFETINFINVSEAKIQAKENLCGFIPATIEISDEREGNIFLNFGVISLFNPPSKVLGDLF 259

Query: 267 LDDFSNPMDLFRSQRSCWMKELSRLH 293
             +FSN +D+ R  +    + L ++H
Sbjct: 260 THNFSNSLDIVRLSQVMKDEGLRKVH 285

BLAST of Spg037394 vs. ExPASy TrEMBL
Match: A0A5A7SLN9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00330 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.7e-07
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 217 KKLEFKVKRNLCGFMSPTIRIRDKVRGNIFLHFGDIVALDPPNIVRGDLVLDDFSNPMDL 276
           ++ + + K NLCGF+  TI I D+  GNIFL+FG I   +PP+ V GDL   +FSN +D+
Sbjct: 195 EEAKIQAKENLCGFIPATIEISDEREGNIFLNFGVISLFNPPSKVLGDLFTHNFSNSLDI 254

Query: 277 FRSQRSCWMKELSRLH 293
            R  +    + L ++H
Sbjct: 255 VRLSQVMKDEGLRKVH 270

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047189.11.9e-2034.81hypothetical protein E6C27_scaffold83G00690 [Cucumis melo var. makuwa] >TYK29739... [more]
TYJ99818.14.2e-2037.42kinesin heavy chain-like [Cucumis melo var. makuwa][more]
XP_038904899.19.6e-0954.39uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida][more]
TYK28792.12.8e-0852.31pseudouridylate synthase 7-like protein isoform X1 [Cucumis melo var. makuwa][more]
TYK16775.15.3e-0737.21DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U1289.1e-2134.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BNW82.0e-2037.42Kinesin heavy chain-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3DYX01.4e-0852.31Pseudouridylate synthase 7-like protein isoform X1 OS=Cucumis melo var. makuwa O... [more]
A0A5D3CZ352.6e-0737.21DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7SLN95.7e-0740.79Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037394.1Spg037394.1mRNA