Spg037291 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037291
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold7: 39940612 .. 39943034 (-)
RNA-Seq ExpressionSpg037291
SyntenySpg037291
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGGAAAATGATGGCAACATTGCTAGTGTGCATTATGGTGGTGGCCATACTACAATTCTCTACAGCCAACAACTATGAGGCCATGATGGCCAGAGCGAAGACCTTGGAGAGTGCCCTTACCTGCTTTAAAACTTGCACTGACCAATGTAAAGCCAAAGGCAACAAGTCCTTTGAGGATTGTGTGCCACCATGCAAACATTGTGGCAAGGAAATGATGGGTATGTGTTTTTCTTTCATCATAAAAAACTCAATTCATAACCATGTACATGTTAAGATGTTTCCATTTTTATCACACACTTTTGATCCACCTAGAAACTGAATAAATTTTAAAGTGTACGTCGAATGGATTGATTTGTTTTTTTTGTAACAAAACGAGGTTATCGTAGATTATAAAAAAAAAAAATTGTGAATGGAGGTAGAGTTATTCAATAGGCAATTTTGTGTTTGGTGAAGGTTAATTTCATTTTGCACCTGACTCTTATTATTTGTTGACTGAGTGTTTGAAGTTTTTTACATTGCCTGTCTTACTTAACATTGGATGAGTGTGAAATTGATAATTTTCCTTCAAAATTTATACCAAGATTTCAAGTAAATTTTTCTCCCCTTTTATTTTGTCGTTTTGTTTTTTACCTTCTTTGATTAATATTAATATTTTTTGTGTTTACTTTGTAGAGAAATACAACGTCGATCTAACCGCCGAATCCGTTAAAAATTGAGTATGAAATGACTGGAGAGATCTAAAGAGTGATCCAATTGATCAAGAAGATTTTGAAACATTTATTTGAATAAGGAAATTTTGATCTTCGTTTATCCTCTTTGGTTTTTACCATGTAATTTACTAGCCTGTTTCATTATCAAAAACTTGTCCTTGGCATCATTTTATTATTGTTCTCAACCAATAAACTTCAACTGCTTTAAGATTTATATTCACAAAATACTTTTTTTTTTTATATTCAACTACCACGCCCAGTGTAAGAACTATGAATAACAAATAAAATTTTATAGTCAAGAAAGAAAAATATCTGTCATTATGTTGATATATCCTTTAATGAAAGGGTTAAACGTCGAAATTAATAATTTTTTTATAACTCATGTGTAGTATAAATACCCATAAAAAATAAAAAGGGAGGACTAATTTGTTTATAAATAAAAACGACATAAATAAAGTCAAAGAATCAATTGTATCATTTTAAACCATAAAAGTTTGTAATGTAATCAATTTACACAATTTGTTAATGATTTATCATAGTTTTGATTGTATTCCATTTTAAAATCAATAAAAACGACATAAATAAAGTCAAAATTTATTCATTTATGAAAATTGACGAGATGAATTGTTATAATTACATATTCCGGATTTTTTTTTTCGTGACCGCCAAATTTTTTACCTATGTATGGAACGTTACTCAATCTTTTCACTAGTACAACCTTCAAGGCCTAAAAAAATTGGACAACATATATCTCTTTCCTAAAACACAGTGCAAGTGGTAGAACCACTCTCTTGCCTTTTCTCCTATGGAAAATGGAAATGCCAAAATTCTGCCACTCCTTCAGTGCCATGAAAAGAATGAAGTTAGTTAATAAAACTAGCGTGAGATCCAAAGTTACCTTCAATCTCAAAATACATTATGCATAGAGACTACTTGCTGAAATGTGGAGCTAAGAACTTTTTCATTGTATGCTCGACCATGTTGATAAGAAAATAAACTCCACCTAGGTTATGTTAATAAAAAGGTACTAAAGTCCCTGCAAGAAACGAACTAAAATAAAAGAGGCAAAAGGCAAAGAATAAAAAAATTAATAAAACTAAGCTCTGAGGTATGATTAGCCATCCTAAACTAATAATTTAAACCAATCTAATGCAATTACAAAGGAATAAAGACTAGTATAGGGAAATGACATACTGATAATTATCCAAAAAGGAGTTATTATTAGTCTTTTATTTTTGGATTGTGTGCTATTTGTGCCAATTAGATGTGTTGGTTAGATGAATTTACAATGTTTTAACCTAAATACGTTAAACCTCGCATTATAAAAAGATGAGTCATAGGAGACTAAGGGGAGGTCAATTGCTTTAGTATCTTTTTACCGCTTTAGTAGGGTTAGGATCAATGTAGTTGTTTCTTATTTAAATTCATTAAATTAATATTCATTTGATAATCTTTAATTTCATGTTGTGCTTCATTTCATTGTGTGCTCGCTTGACCAGTCGAAATATATATCTCTTCCTAGCATCATGGATGATTTAGGGAGTATGTGACATGTAATCACAATAGATTGTGGATAGTTGGTGGAAGCCAGTAGTTGGGTTATGGATAACCGGTTACCTAATGCATGATCAGTAGATCATCACTGGAGTTGAAACACGTTCCGAAAAATTCAGAGTTGTGGGAGCATCCTGCAGATAGGACTGGATGA

mRNA sequence

ATGGCCAGGAAAATGATGGCAACATTGCTAGTGTGCATTATGGTGGTGGCCATACTACAATTCTCTACAGCCAACAACTATGAGGCCATGATGGCCAGAGCGAAGACCTTGGAGAGTGCCCTTACCTGCTTTAAAACTTGCACTGACCAATGTAAAGCCAAAGGCAACAAGTCCTTTGAGGATTGTGTGCCACCATGCAAACATTGTGGCAAGGAAATGATGGGTATATCATCACTGGAGTTGAAACACGTTCCGAAAAATTCAGAGTTGTGGGAGCATCCTGCAGATAGGACTGGATGA

Coding sequence (CDS)

ATGGCCAGGAAAATGATGGCAACATTGCTAGTGTGCATTATGGTGGTGGCCATACTACAATTCTCTACAGCCAACAACTATGAGGCCATGATGGCCAGAGCGAAGACCTTGGAGAGTGCCCTTACCTGCTTTAAAACTTGCACTGACCAATGTAAAGCCAAAGGCAACAAGTCCTTTGAGGATTGTGTGCCACCATGCAAACATTGTGGCAAGGAAATGATGGGTATATCATCACTGGAGTTGAAACACGTTCCGAAAAATTCAGAGTTGTGGGAGCATCCTGCAGATAGGACTGGATGA

Protein sequence

MARKMMATLLVCIMVVAILQFSTANNYEAMMARAKTLESALTCFKTCTDQCKAKGNKSFEDCVPPCKHCGKEMMGISSLELKHVPKNSELWEHPADRTG
Homology
[Close]
BLAST of Spg037291 vs. NCBI nr
Match: KAG6595587.1 (hypothetical protein SDJN03_12140, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-04
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 0 

Query: 1  MARKMMATLLVCIMVVAILQFSTANNYEAMMARAKT-------LESAL-TCFKTCTDQCK 60
          MA+KMMA LL+C+++V+ LQFSTA++   M AR K+       +E+ L +C  TC  +C 
Sbjct: 1  MAKKMMAVLLMCVLLVSALQFSTADSPAEMEARFKSFFGDLSGVEAKLKSCAATCEKECV 60

Query: 61 AKGNKSFEDCVPPCK-HCGKE 73
          AKG  S E C P C   CGK+
Sbjct: 61 AKGETS-ESCKPKCNTDCGKK 80

The following BLAST results are available for this feature:
BLAST of Spg037291 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595587.15.3e-0445.68hypothetical protein SDJN03_12140, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Spg037291 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg037291 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg037291 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037291.1Spg037291.1mRNA