Spg037282 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037282
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationscaffold3: 22598552 .. 22600529 (+)
RNA-Seq ExpressionSpg037282
SyntenySpg037282
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTGGAGCTACACAGAAGGAATCAAGAGGTGAGGTTTGATGTTCTTGAAAGTTAGTTCATTTTATAACAAATTTCATGAAGGAAGCTTGACCTAAATCGTATGAGAAGTTGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGCTATGGTTGGAAATCTTATTCAATTATCTACAACGTTCATGAAGAATTCGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGGAAGATAAAGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACAAATGGGTTGGCATTTCTTTAGGTAAGTTGTAGAGTGTTCGACAATGAAGAGTTTGATGGGTATTTCATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAGAGTAGAGTGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTAATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATGTTCTTAAACGGTTGTTCATGATTATATGTTTTACATGCTTTCCTATGAATGATACATGGTTTTTATGAACGGTTTCAAGCATGAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGTCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGCAAAGTATGGATTAGCAAGTACTTCTAAATGATTTTCGGTTTTCCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCAGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATATACTTGATATGCCTTGCTAGATTCTTAATGACGGACTTGCGAAATGTTTTAGAAAGCCTTTATCCTTACACGTTTATGTTAAACGCTTTGACTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCAGATTTAGAGTTTTAAAATTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGCTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAAAGGTTATATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTATATCAGGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAATGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTTGTCCGGGAGGGGGTGTGACATCTTGGTATCAGAGCAGTTAG

mRNA sequence

ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTGGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGCTATGGTTGGAAATCTTATTCAATTATCTACAACGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGCTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAATGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTTGTCCGGGAGGGGGTGTGACATCTTGGTATCAGAGCAGTTAG

Coding sequence (CDS)

ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTGGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGCTATGGTTGGAAATCTTATTCAATTATCTACAACGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGCTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAATGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTTGTCCGGGAGGGGGTGTGACATCTTGGTATCAGAGCAGTTAG

Protein sequence

MQSQPLQDLRSTCQPLVFYSVGATQKESRAFWGVQVESEALFAMVGNLIQLSTTPRGNRSSLQTGELDKTVEIELPLPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGVTSWYQSS
Homology
[Close]
BLAST of Spg037282 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-26
Identity = 90/187 (48.13%), Postives = 105/187 (56.15%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQP-LVFYSVGATQ-KESRAF----WGVQVESEALFAMVGNLI--QLS 60
           MQSQPLQ+L +T     V +S+   +  +S  F     G  V S+AL  +  + +  +L 
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVLSDALSILEIHKLNQKLY 60

Query: 61  TTPRGNRSSLQTGELDKTV---------------EIELPLPDTLPTSAESSRSSSSTW-- 120
             PRGNR SLQTGELDKTV                IELP+PDTLPTSAESS S+SSTW  
Sbjct: 61  LGPRGNRLSLQTGELDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWLE 120

Query: 121 -------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGV 138
                                    FNVSVGSTGIVRGDDVCWLHAVFRAK  G PGGGV
Sbjct: 121 LYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGV 180

[Close]
BLAST of Spg037282 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 9.2e-23
Identity = 73/136 (53.68%), Postives = 78/136 (57.35%), Query Frame = 0 

Query: 45  VGNLIQL-STTPRGNRSSLQTGELDKT---------------VEIELPLPDTLPTSAESS 104
           + NL  L S  PRGNR SLQT ELDKT               V IELP+PD LPTSAESS
Sbjct: 67  ISNLENLKSGMPRGNRLSLQTRELDKTVIFPLSTLSVLRDNNVVIELPVPDILPTSAESS 126

Query: 105 RSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAK 138
            S+SSTW                           FNVSVGSTGIVRGDDVCWLHAVFRAK
Sbjct: 127 GSNSSTWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAK 186

[Close]
BLAST of Spg037282 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-22
Identity = 72/146 (49.32%), Postives = 84/146 (57.53%), Query Frame = 0 

Query: 13  CQPLVFYSVGATQKESRAFWGVQVESEALFAMVGNLI----QLSTTPRGNRSSLQTGELD 72
           CQPL+     +  +E R       ES    +  G  +     LS  PRGNR +L TG+LD
Sbjct: 39  CQPLIVLFGLSYLEELRG------ESTRFLSKSGGFLVFSDALSILPRGNRPNLHTGKLD 98

Query: 73  KTVEIELPLPDTLPTSAESSRSSSSTWFNV---SV---------------------GSTG 131
           KTVEIELP+PDTLPTSAESS+S+SSTW  +   SV                     GS G
Sbjct: 99  KTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSDVRVASYVCWEGSAG 158

[Close]
BLAST of Spg037282 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 7.8e-22
Identity = 79/151 (52.32%), Postives = 90/151 (59.60%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQPLVFYSVGATQKESRAFWGVQVESEALFAM---VGNLIQLSTTPRG 60
           MQSQPLQ+L +T    +F S  +T+  S+   G  V S+AL  +     N       PRG
Sbjct: 1   MQSQPLQNLGATVNLWLFCS--STRFSSKP-GGFLVFSDALSILEMHKSNQKLYLVRPRG 60

Query: 61  NRSSLQTGELDKT-----------------VEIELPLPDTLPTSAESSRSSSSTWFNVSV 120
           NR SLQTG+LDKT                 VEIELP+PDTLPTSAES  S+S        
Sbjct: 61  NRPSLQTGKLDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSR------- 120

Query: 121 GSTGIVRGDDVCWLHAVFRAKLAGCPGGGVT 132
            STGIVRGDDVCWLHAVFRAK AG PGGGVT
Sbjct: 121 -STGIVRGDDVCWLHAVFRAKTAGGPGGGVT 140

[Close]
BLAST of Spg037282 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-21
Identity = 80/182 (43.96%), Postives = 97/182 (53.30%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQPLVFYS--VGA--TQKESRAFWGVQVESEALFAMV--GNLIQLSTT 60
           MQSQPLQ+L +T      +S  +G      ++ +   V   ++ L+  +  G   +    
Sbjct: 1   MQSQPLQNLGATGNLWTGFSSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDVM 60

Query: 61  PRGNRSSLQTGELDKT-----------------VEIELPLPDTLPTSAESSRSSSSTW-- 120
            RGNRSSLQ+GELD T                 VEIELP+PDTLPTSAESS S+SSTW  
Sbjct: 61  LRGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 120

Query: 121 -------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGV 133
                                    F+V VGSTGIVRGDDVCWLHAVFRAK  G PGGGV
Sbjct: 121 LYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGV 180

[Close]
BLAST of Spg037282 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.5e-26
Identity = 90/187 (48.13%), Postives = 105/187 (56.15%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQP-LVFYSVGATQ-KESRAF----WGVQVESEALFAMVGNLI--QLS 60
           MQSQPLQ+L +T     V +S+   +  +S  F     G  V S+AL  +  + +  +L 
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVLSDALSILEIHKLNQKLY 60

Query: 61  TTPRGNRSSLQTGELDKTV---------------EIELPLPDTLPTSAESSRSSSSTW-- 120
             PRGNR SLQTGELDKTV                IELP+PDTLPTSAESS S+SSTW  
Sbjct: 61  LGPRGNRLSLQTGELDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWLE 120

Query: 121 -------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGV 138
                                    FNVSVGSTGIVRGDDVCWLHAVFRAK  G PGGGV
Sbjct: 121 LYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGV 180

[Close]
BLAST of Spg037282 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.5e-23
Identity = 73/136 (53.68%), Postives = 78/136 (57.35%), Query Frame = 0 

Query: 45  VGNLIQL-STTPRGNRSSLQTGELDKT---------------VEIELPLPDTLPTSAESS 104
           + NL  L S  PRGNR SLQT ELDKT               V IELP+PD LPTSAESS
Sbjct: 67  ISNLENLKSGMPRGNRLSLQTRELDKTVIFPLSTLSVLRDNNVVIELPVPDILPTSAESS 126

Query: 105 RSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAK 138
            S+SSTW                           FNVSVGSTGIVRGDDVCWLHAVFRAK
Sbjct: 127 GSNSSTWLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAK 186

[Close]
BLAST of Spg037282 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 72/146 (49.32%), Postives = 84/146 (57.53%), Query Frame = 0 

Query: 13  CQPLVFYSVGATQKESRAFWGVQVESEALFAMVGNLI----QLSTTPRGNRSSLQTGELD 72
           CQPL+     +  +E R       ES    +  G  +     LS  PRGNR +L TG+LD
Sbjct: 39  CQPLIVLFGLSYLEELRG------ESTRFLSKSGGFLVFSDALSILPRGNRPNLHTGKLD 98

Query: 73  KTVEIELPLPDTLPTSAESSRSSSSTWFNV---SV---------------------GSTG 131
           KTVEIELP+PDTLPTSAESS+S+SSTW  +   SV                     GS G
Sbjct: 99  KTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSDVRVASYVCWEGSAG 158

[Close]
BLAST of Spg037282 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.8e-22
Identity = 79/151 (52.32%), Postives = 90/151 (59.60%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQPLVFYSVGATQKESRAFWGVQVESEALFAM---VGNLIQLSTTPRG 60
           MQSQPLQ+L +T    +F S  +T+  S+   G  V S+AL  +     N       PRG
Sbjct: 1   MQSQPLQNLGATVNLWLFCS--STRFSSKP-GGFLVFSDALSILEMHKSNQKLYLVRPRG 60

Query: 61  NRSSLQTGELDKT-----------------VEIELPLPDTLPTSAESSRSSSSTWFNVSV 120
           NR SLQTG+LDKT                 VEIELP+PDTLPTSAES  S+S        
Sbjct: 61  NRPSLQTGKLDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSR------- 120

Query: 121 GSTGIVRGDDVCWLHAVFRAKLAGCPGGGVT 132
            STGIVRGDDVCWLHAVFRAK AG PGGGVT
Sbjct: 121 -STGIVRGDDVCWLHAVFRAKTAGGPGGGVT 140

[Close]
BLAST of Spg037282 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.9e-22
Identity = 80/182 (43.96%), Postives = 97/182 (53.30%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQPLVFYS--VGA--TQKESRAFWGVQVESEALFAMV--GNLIQLSTT 60
           MQSQPLQ+L +T      +S  +G      ++ +   V   ++ L+  +  G   +    
Sbjct: 1   MQSQPLQNLGATGNLWTGFSSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDVM 60

Query: 61  PRGNRSSLQTGELDKT-----------------VEIELPLPDTLPTSAESSRSSSSTW-- 120
            RGNRSSLQ+GELD T                 VEIELP+PDTLPTSAESS S+SSTW  
Sbjct: 61  LRGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 120

Query: 121 -------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGCPGGGV 133
                                    F+V VGSTGIVRGDDVCWLHAVFRAK  G PGGGV
Sbjct: 121 LYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGV 180

The following BLAST results are available for this feature:
BLAST of Spg037282 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11835.13.1e-2648.13uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa][more]
KAA0058280.19.2e-2353.68uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa][more]
KAA0052218.13.5e-2249.32uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0060199.17.8e-2252.32uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ9... [more]
KAA0062409.11.0e-2143.96reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Spg037282 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg037282 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CJX31.5e-2648.13CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7UT174.5e-2353.68CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5A7UAH61.7e-2249.32CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3BAD13.8e-2252.32Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7V9N34.9e-2243.96Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
BLAST of Spg037282 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037282.1Spg037282.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0016787 hydrolase activity