Spg037264 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037264
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold3: 22233620 .. 22235479 (+)
RNA-Seq ExpressionSpg037264
SyntenySpg037264
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTGTTTCGAGCGTTCTGGGGTGTTCAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACGTTTATGAAGAATTCGTGAGCCAACAATGACTCGAAGAATGTTTAATTTCAGGAGAAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTATGTTCGGGGGATTTCTGGATAAATCGGTTGGGAATCTCGATTTTGTTACTTCAGGTAAGTTGTAGGGTGTTACAAAATGAATAGTTTGATGTATAGCACATTAAGTTTGGTTAAGTATTGAGGAAGGTATGGGTATTGAAAGTTGTGGTATTGAATCTTTAAAATCTGGAAAAGTAGAATGTGAAGTGTGATTTTTGATTCAAGTGTTTAGAATTCATGAGCATGGAAAGACAAAGCTACTTATCGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCATAGACAGTGAGTGAGAAAACGAATTTCGAAAATTGCTTCCAAACGGTTGTACATGTTTAGATGTTTTACATGCTTTCTATGAATGATACATGATTTCTATGAACAGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAATGAGGTTTATATATGAGCACGTGGCTAATAACTTTATGAAAAGTAGTTGAAGCGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAATGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTATGAAAGATAACGATAAGCAAGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCATGTGCACACAGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGATGATGGGAGTGTTGGGCGGGCCCCACCACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGGTGCCCTACACAACGTAGATCAGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCCTGCTAGATTTTTAATAACGTACTTGCGAGTTATTTGAGAAAGCTTTTATCGTTACACGTTTATGTTAAATGCTTGATTGAACAGATTTATACGTGTAAAGGTTTATCACGTGTTCCGTTTTGCAAATCTACAGTTTTTAAAGTTAGTCACTCACTAGGTTTCCTAACTCATTCTTTCAAAATGTTTTTCCACTTTTCAGGTAGAGATTGAGCTCCCGGTGCCTGCTACACTGCCAACGTCTGCTGAAAGATCTAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAATGTTTTGTAAGGATTGGATAATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCCAGTTGTATATGTTTTTGGTTGTGATATCTATATCAGGTTATTTTCCAAACCGAGTTTTGTCAGGGCGGCACCTCGTGTATGTTGGATGGTTTTCAGGGAATCCACTGGGTTGTGTTTCATTTAGAATATTTTATATCTAAGATTAGTACGTTTATCAGGTTCAATGTTACAGAAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTTTGTTGGCTTCACGCCATCTTCCGGACTGAGTTCGCAGGTGGTCCGGGAGGGGGTGTGACATTGGAACTCAAAGTTCGGACCAATGACAGTTCTTTAGGTGGTTTGGCTGACAAATAG

mRNA sequence

ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTGTTTCGAGCGTTCTGGGGTGTTCAAGTTGAATCAGAAGCTCTATTTGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATTGAGCTCCCGGTGCCTGCTACACTGCCAACGTCTGCTGAAAGATCTAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTAAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTTTGTTGGCTTCACGCCATCTTCCGGACTGAGTTCGCAGGTGGTCCGGGAGGGGGTGTGACATTGGAACTCAAAGTTCGGACCAATGACAGTTCTTTAGGTGGTTTGGCTGACAAATAG

Coding sequence (CDS)

ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTGTTTCGAGCGTTCTGGGGTGTTCAAGTTGAATCAGAAGCTCTATTTGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATTGAGCTCCCGGTGCCTGCTACACTGCCAACGTCTGCTGAAAGATCTAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTAAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTTTGTTGGCTTCACGCCATCTTCCGGACTGAGTTCGCAGGTGGTCCGGGAGGGGGTGTGACATTGGAACTCAAAGTTCGGACCAATGACAGTTCTTTAGGTGGTTTGGCTGACAAATAG

Protein sequence

MVFGMENRAQDFRAKQEDLWFSLVFRAFWGVQVESEALFGYISLLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIKGQWVSLEEDDVCWLHAIFRTEFAGGPGGGVTLELKVRTNDSSLGGLADK
Homology
[Close]
BLAST of Spg037264 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 3.0e-24
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 44  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIKGQWVS--LEED 103
           L TLSVLRDNDAVVEIELPVP TLPTSAE S S+SSTW+ELY+E VH++  W++  + ED
Sbjct: 21  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVRED 80

Query: 104 DVCWLHAIFRTEFAGGPGGGV 123
           DVCWLHA+FR + AGGPGGGV
Sbjct: 81  DVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg037264 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 3.0e-24
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 44  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIKGQWVS--LEED 103
           L TLSVLRDNDAVVEIELPVP TLPTSAE S S+SSTW+ELY+E VH++  W++  + ED
Sbjct: 21  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVRED 80

Query: 104 DVCWLHAIFRTEFAGGPGGGV 123
           DVCWLHA+FR + AGGPGGGV
Sbjct: 81  DVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg037264 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 3.1e-21
Identity = 60/100 (60.00%), Postives = 67/100 (67.00%), Query Frame = 0 

Query: 43   SLLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIK---------- 102
            SL TLSVLRDNDAVVEIELPVP TLPTSAE   S+SSTW+ELY ESVH++          
Sbjct: 1416 SLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVHVEMFCYFTNQGM 1475

Query: 103  ---------GQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT 124
                     G    +  DDVCWLHA+FR + AGGPGGGVT
Sbjct: 1476 SGLHLMLNVGSVGIVRGDDVCWLHAVFRAKTAGGPGGGVT 1515

[Close]
BLAST of Spg037264 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 3.1e-21
Identity = 60/100 (60.00%), Postives = 67/100 (67.00%), Query Frame = 0 

Query: 43   SLLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIK---------- 102
            SL TLSVLRDNDAVVEIELPVP TLPTSAE   S+SSTW+ELY ESVH++          
Sbjct: 1416 SLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVHVEMFCYFTNQGM 1475

Query: 103  ---------GQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT 124
                     G    +  DDVCWLHA+FR + AGGPGGGVT
Sbjct: 1476 SGLHLMLNVGSVGIVRGDDVCWLHAVFRAKTAGGPGGGVT 1515

[Close]
BLAST of Spg037264 vs. NCBI nr
Match: TYK25935.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 5.2e-21
Identity = 60/98 (61.22%), Postives = 67/98 (68.37%), Query Frame = 0 

Query: 44  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHI------------ 103
           L TLSVLRDNDAVVEIELP+P TLPTSAE S S+SSTW+ELY ESVH+            
Sbjct: 323 LSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDARA 382

Query: 104 ------KGQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT 124
                 +G    +  DDVCWLHAIFR + AGGPGGGVT
Sbjct: 383 ASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVT 420

[Close]
BLAST of Spg037264 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 44  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIKGQWVS--LEED 103
           L TLSVLRDNDAVVEIELPVP TLPTSAE S S+SSTW+ELY+E VH++  W++  + ED
Sbjct: 21  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVRED 80

Query: 104 DVCWLHAIFRTEFAGGPGGGV 123
           DVCWLHA+FR + AGGPGGGV
Sbjct: 81  DVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg037264 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 44  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIKGQWVS--LEED 103
           L TLSVLRDNDAVVEIELPVP TLPTSAE S S+SSTW+ELY+E VH++  W++  + ED
Sbjct: 21  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVRED 80

Query: 104 DVCWLHAIFRTEFAGGPGGGV 123
           DVCWLHA+FR + AGGPGGGV
Sbjct: 81  DVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg037264 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 60/100 (60.00%), Postives = 67/100 (67.00%), Query Frame = 0 

Query: 43   SLLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIK---------- 102
            SL TLSVLRDNDAVVEIELPVP TLPTSAE   S+SSTW+ELY ESVH++          
Sbjct: 1416 SLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVHVEMFCYFTNQGM 1475

Query: 103  ---------GQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT 124
                     G    +  DDVCWLHA+FR + AGGPGGGVT
Sbjct: 1476 SGLHLMLNVGSVGIVRGDDVCWLHAVFRAKTAGGPGGGVT 1515

[Close]
BLAST of Spg037264 vs. ExPASy TrEMBL
Match: A0A5D3D150 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002770 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 60/100 (60.00%), Postives = 67/100 (67.00%), Query Frame = 0 

Query: 43   SLLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHIK---------- 102
            SL TLSVLRDNDAVVEIELPVP TLPTSAE   S+SSTW+ELY ESVH++          
Sbjct: 1416 SLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVHVEMFCYFTNQGM 1475

Query: 103  ---------GQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT 124
                     G    +  DDVCWLHA+FR + AGGPGGGVT
Sbjct: 1476 SGLHLMLNVGSVGIVRGDDVCWLHAVFRAKTAGGPGGGVT 1515

[Close]
BLAST of Spg037264 vs. ExPASy TrEMBL
Match: A0A5A7T9P7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G00060 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-21
Identity = 60/98 (61.22%), Postives = 67/98 (68.37%), Query Frame = 0 

Query: 44  LLTLSVLRDNDAVVEIELPVPATLPTSAERSRSSSSTWVELYIESVHI------------ 103
           L TLSVLRDNDAVVEIELP+P TLPTSAE S S+SSTW+ELY ESVH+            
Sbjct: 323 LSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDARA 382

Query: 104 ------KGQWVSLEEDDVCWLHAIFRTEFAGGPGGGVT 124
                 +G    +  DDVCWLHAIFR + AGGPGGGVT
Sbjct: 383 ASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVT 420

The following BLAST results are available for this feature:
BLAST of Spg037264 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK27998.13.0e-2472.84reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066851.13.0e-2472.84reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0042035.13.1e-2160.00DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK17971.13.1e-2160.00DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK25935.15.2e-2161.22gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Spg037264 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg037264 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DX391.4e-2472.84Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7VMG91.4e-2472.84Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7TKT01.5e-2160.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
A0A5D3D1501.5e-2160.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
A0A5A7T9P72.5e-2161.22Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G000... [more]
BLAST of Spg037264 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037264.1Spg037264.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity