Spg037192 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037192
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold5: 24374127 .. 24376012 (+)
RNA-Seq ExpressionSpg037192
SyntenySpg037192
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGAGTGTACAAGTTGAATCCGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAAATTCCTACAACTTGCATGAAGAATTCATGAACCAAAAATGACTTGAAGTAGGTTTAATTGCAGGAGAAAGATAAAGGGTAGCATAGAACCTCGAATCTGTGTTGTCTGAGTTCGGGGCACTTCTGGACCGATTGGCTGGGAATCTTGTTTTCATTTCTTCAGGTACGTTGTAGAGTGTTCGAAACTGAAGAGTTTGATGTGTATTACATTAATCTTGGTTAAGTATTGAGGATGTTATGAGTGTTGGAAATTGTGGTGTTGAATTTGGAAAATCTGAAAAGTAGAATGTGAATGTGATTCTTAATTCAATTGTCTAGAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACAGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACGGTTACTCATTTCTAGATGTTTTACATGTTTTTTCTATGAATGACACATGATCTCTATGAACGGTTTCAAGCATAAGTTTTGAGCTTGGATTTTCTAATGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGCAAAGTATGGATTAGCAAGTACTTTTAAATGATTTTCAGTTTTTCACAAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATCTGATTTTCGGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCCTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTAAACAACGTAGATCGGTCATATTAGTTAAAACATTTGATGCACATGATATGCCTTGCTAGATTTTCAATGACGAACTTGCGAGATATTTTAGAAAGCCTTTATCATTACACATTTATGTTAAACGCTTTGATTGAGCATATTTACACGTATAAAGGTTTATCACGTGTTTTAACTTCTGGATTTAGAGTTTTAAAGTTAGTCACTCACCGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTTCTACTTTTTAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTGTGTCCATATTGTAAATGTTTTGAAAGGATTTGATAATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCCGGTTGCATATGTTTTTGGTTGTGATATCTATATCAGGTTATTATCCGAACCAAGTTATGTCAGGGCGGCACCTCGTGTATGTTAAAAGGTTTTCAGGGATTCCGCTGTGTTGTGTTTCATGTGGAATGTTTTATATCCAAGATTAGTATGTTTATCAGGTTCTACATTTCAGGAGTGTCAATGGGTATCGTTAGAGGAGGACGATGCTTGTTGGCTTCAGGCCATCTTCCGGACTAAGCGAGCAGGAGGTCTGGGAGGGGGTGTGACACATGCGATGAAAGTTGAAGAAAAGTTCAAGGAGAATTATATCAAGGCTTTTGCTGTTGCAACCTCGTGCGTTTATAAGAATCGTGTAACGCATACTTTGGCTAATTGA

mRNA sequence

GCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGAGTGTACAAGTTGAATCCGAAGCTCTATTTGTTCGGGGCACTTCTGGACCGATTGGCTGGGAATCTTGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACAATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACATTTCAGGAGTGTCAATGGGTATCGTTAGAGGAGGACGATGCTTGTTGGCTTCAGGCCATCTTCCGGACTAAGCGAGCAGGAGGTCTGGGAGGGGGTGTGACACATGCGATGAAAGTTGAAGAAAAGTTCAAGGAGAATTATATCAAGGCTTTTGCTGTTGCAACCTCGTGCGTTTATAAGAATCGTGTAACGCATACTTTGGCTAATTGA

Coding sequence (CDS)

GCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGAGTGTACAAGTTGAATCCGAAGCTCTATTTGTTCGGGGCACTTCTGGACCGATTGGCTGGGAATCTTGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACAATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACATTTCAGGAGTGTCAATGGGTATCGTTAGAGGAGGACGATGCTTGTTGGCTTCAGGCCATCTTCCGGACTAAGCGAGCAGGAGGTCTGGGAGGGGGTGTGACACATGCGATGAAAGTTGAAGAAAAGTTCAAGGAGAATTATATCAAGGCTTTTGCTGTTGCAACCTCGTGCGTTTATAAGAATCGTGTAACGCATACTTTGGCTAATTGA

Protein sequence

AQDFRAKQEDLWFPLVFRAFWSVQVESEALFVRGTSGPIGWESCFHFFRPRGNRSSLQTRELAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSSTFQECQWVSLEEDDACWLQAIFRTKRAGGLGGGVTHAMKVEEKFKENYIKAFAVATSCVYKNRVTHTLAN
Homology
[Close]
BLAST of Spg037192 vs. NCBI nr
Match: TYK01784.1 (hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-19
Identity = 64/113 (56.64%), Postives = 69/113 (61.06%), Query Frame = 0 

Query: 50  PRGNRSSLQTRELAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELP 109
           PRGNR +LQT EL KT+SIDY+TEILS RLYGTVCTQ                 VEIEL 
Sbjct: 639 PRGNRPNLQTGELDKTLSIDYVTEILSLRLYGTVCTQVIFSLSTLSVLRDNDVVVEIELL 698

Query: 110 VPDTLPTSAESSRSSSSSTFQECQWVSLEEDDACWLQAIFRTKRAGGLGGGVT 146
           VPDTLPTSAESS S S S         +  DD CWL  +FR K  GG G GVT
Sbjct: 699 VPDTLPTSAESSESKSRSV------GIVRGDDVCWLHVVFRAKTVGGPGVGVT 745

[Close]
BLAST of Spg037192 vs. NCBI nr
Match: KAA0052217.1 (hypothetical protein E6C27_scaffold207G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-19
Identity = 64/113 (56.64%), Postives = 69/113 (61.06%), Query Frame = 0 

Query: 50  PRGNRSSLQTRELAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELP 109
           PRGNR +LQT EL KT+SIDY+TEILS RLYGTVCTQ                 VEIEL 
Sbjct: 639 PRGNRPNLQTGELDKTLSIDYVTEILSLRLYGTVCTQVIFSLSTLSVLRDNDVVVEIELL 698

Query: 110 VPDTLPTSAESSRSSSSSTFQECQWVSLEEDDACWLQAIFRTKRAGGLGGGVT 146
           VPDTLPTSAESS S S S         +  DD CWL  +FR K  GG G GVT
Sbjct: 699 VPDTLPTSAESSESKSRSV------GIVRGDDVCWLHVVFRAKTVGGPGVGVT 745

[Close]
BLAST of Spg037192 vs. NCBI nr
Match: TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-17
Identity = 68/149 (45.64%), Postives = 80/149 (53.69%), Query Frame = 0 

Query: 48   FRPRGNRSSLQTRELAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIE 107
            + PR NR SLQT EL KT+SIDYMTEILS RL GTVCTQ                 VEIE
Sbjct: 1263 WEPRENRLSLQTGELDKTLSIDYMTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIE 1322

Query: 108  LPVPDTLPTSAESSRSSSS-------------------STFQECQWVSLE-------EDD 154
            LPVPDTLPTSAE   S+SS                   S  +   +V  E        DD
Sbjct: 1323 LPVPDTLPTSAEIFESNSSTWLELYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDD 1382

[Close]
BLAST of Spg037192 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-15
Identity = 56/101 (55.45%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 71  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ 130
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+  +
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 131 --------ECQWVS--LEEDDACWLQAIFRTKRAGGLGGGV 145
                   E  W++  + EDD CWL A+FR K AGG GGGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg037192 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-15
Identity = 56/101 (55.45%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 71  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ 130
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+  +
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 131 --------ECQWVS--LEEDDACWLQAIFRTKRAGGLGGGV 145
                   E  W++  + EDD CWL A+FR K AGG GGGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg037192 vs. ExPASy TrEMBL
Match: A0A5A7UCL6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00280 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.1e-20
Identity = 64/113 (56.64%), Postives = 69/113 (61.06%), Query Frame = 0 

Query: 50  PRGNRSSLQTRELAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELP 109
           PRGNR +LQT EL KT+SIDY+TEILS RLYGTVCTQ                 VEIEL 
Sbjct: 639 PRGNRPNLQTGELDKTLSIDYVTEILSLRLYGTVCTQVIFSLSTLSVLRDNDVVVEIELL 698

Query: 110 VPDTLPTSAESSRSSSSSTFQECQWVSLEEDDACWLQAIFRTKRAGGLGGGVT 146
           VPDTLPTSAESS S S S         +  DD CWL  +FR K  GG G GVT
Sbjct: 699 VPDTLPTSAESSESKSRSV------GIVRGDDVCWLHVVFRAKTVGGPGVGVT 745

[Close]
BLAST of Spg037192 vs. ExPASy TrEMBL
Match: A0A5D3BRJ2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00120 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.1e-20
Identity = 64/113 (56.64%), Postives = 69/113 (61.06%), Query Frame = 0 

Query: 50  PRGNRSSLQTRELAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELP 109
           PRGNR +LQT EL KT+SIDY+TEILS RLYGTVCTQ                 VEIEL 
Sbjct: 639 PRGNRPNLQTGELDKTLSIDYVTEILSLRLYGTVCTQVIFSLSTLSVLRDNDVVVEIELL 698

Query: 110 VPDTLPTSAESSRSSSSSTFQECQWVSLEEDDACWLQAIFRTKRAGGLGGGVT 146
           VPDTLPTSAESS S S S         +  DD CWL  +FR K  GG G GVT
Sbjct: 699 VPDTLPTSAESSESKSRSV------GIVRGDDVCWLHVVFRAKTVGGPGVGVT 745

[Close]
BLAST of Spg037192 vs. ExPASy TrEMBL
Match: A0A5D3CCC7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00430 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.4e-18
Identity = 68/149 (45.64%), Postives = 80/149 (53.69%), Query Frame = 0 

Query: 48   FRPRGNRSSLQTRELAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIE 107
            + PR NR SLQT EL KT+SIDYMTEILS RL GTVCTQ                 VEIE
Sbjct: 1263 WEPRENRLSLQTGELDKTLSIDYMTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIE 1322

Query: 108  LPVPDTLPTSAESSRSSSS-------------------STFQECQWVSLE-------EDD 154
            LPVPDTLPTSAE   S+SS                   S  +   +V  E        DD
Sbjct: 1323 LPVPDTLPTSAEIFESNSSTWLELYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDD 1382

[Close]
BLAST of Spg037192 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.0e-16
Identity = 56/101 (55.45%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 71  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ 130
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+  +
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 131 --------ECQWVS--LEEDDACWLQAIFRTKRAGGLGGGV 145
                   E  W++  + EDD CWL A+FR K AGG GGGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg037192 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.0e-16
Identity = 56/101 (55.45%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 71  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ 130
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+  +
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 131 --------ECQWVS--LEEDDACWLQAIFRTKRAGGLGGGV 145
                   E  W++  + EDD CWL A+FR K AGG GGGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

The following BLAST results are available for this feature:
BLAST of Spg037192 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK01784.11.3e-1956.64hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa][more]
KAA0052217.11.3e-1956.64hypothetical protein E6C27_scaffold207G00280 [Cucumis melo var. makuwa][more]
TYK08952.11.5e-1745.64DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK27998.11.4e-1555.45reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066851.11.4e-1555.45reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Spg037192 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg037192 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UCL66.1e-2056.64Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3BRJ26.1e-2056.64Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3CCC77.4e-1845.64DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3DX397.0e-1655.45Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7VMG97.0e-1655.45Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
BLAST of Spg037192 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037192.1Spg037192.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0003824 catalytic activity