Spg037177 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037177
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold5: 23922749 .. 23924879 (-)
RNA-Seq ExpressionSpg037177
SyntenySpg037177
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCCCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTCGAAAAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGTTTGATTTTCTTGAAAGTTAGTTCATTTTCTAACAAATTTCATGAAGGAAGCTTGACCTAAATCGTATGAGAAGTGGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAATCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTATCTACAACCGTCATGAAGAATTCGTGAGCCAAAAATGACATTAAGTAGGTTTAATTTCAGGAGGAAGATAAAGGGTAACAGAGAAGCTCGAAACTGTGTTGTCTGACTTCGGGGCATTTCTGGACACATTGGTTGGGAATCTCATTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTGGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAGAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGTTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGACCGAGTCTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATGTTCTTAAACGGTTGTTCATGATTATATGTTTTACATGCTTTCCTATGAATGATACATGGTTTTTATGAACGGTTTCAAGCATGAGTTGTGAGCTCAGGTTTTCTAATGAGGTTTATATACGAGCACGTGTCTAATGACTTTATGAAAAGTAGTTGAAACGATATCTTTTAAAGTAAAGTGTTTGTTAGCAAGTATTTTTTTTTAAATGATTTTCAGTTTTTCACGAGCAAACTGAGTAAGCTTAAGTTTTACGAAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTATATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATATTTCAGAAAGCCTTTTTCATTACACGTTTATGTTAAACGCTTTGACTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCAGATTCAGAGCTTTAAAATTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCACTTTTCAGGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTATATCAGGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTCCATATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG

mRNA sequence

ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCCCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTCGAAAAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGACCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG

Coding sequence (CDS)

ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCCCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTCGAAAAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGACCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG

Protein sequence

MDSTKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRSKKIGKSSCKASHCRIWVQTVNLWFLFGLSYTEGIKRPRGNRPSLQTGELDKTVEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG
Homology
[Close]
BLAST of Spg037177 vs. NCBI nr
Match: TYK08801.1 (hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 6.7e-33
Identity = 111/271 (40.96%), Postives = 121/271 (44.65%), Query Frame = 0 

Query: 12  IFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRSKKIGKSSCKASHCRIWVQTVN- 71
           +FQPNFISF HHFP KLSEHFEERVK EEEEEFRGLR KKIGKSSCKA+HCRIW    + 
Sbjct: 56  LFQPNFISFLHHFPSKLSEHFEERVK-EEEEEFRGLRLKKIGKSSCKANHCRIWSTGFSS 115

Query: 72  -----LWFLFGLSYTEGIK-------------------RPRGNRPSLQTGELDK------ 131
                L F   LS  E  K                    PRGNR SLQTG+LDK      
Sbjct: 116 KPRGFLVFSDALSILEVQKSNQKLYWDIESGKSGKWDVMPRGNRSSLQTGQLDKIEISID 175

Query: 132 ------------------------------------------------------------ 160
                                                                       
Sbjct: 176 YMTEILSLRLYGTVCPQVIFPLSTLSVLRDNDAVVSVGQTHYDKDDGVPGGPHYIVGLVN 235

[Close]
BLAST of Spg037177 vs. NCBI nr
Match: KAA0053276.1 (uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-28
Identity = 93/190 (48.95%), Postives = 109/190 (57.37%), Query Frame = 0 

Query: 4   TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRSKKIGKSSCKASHCR 63
           TKPTTD  IFQ NFI F HHF  KLSE+F+ERVK EEEEEFRGLR KK+ K   ++   +
Sbjct: 145 TKPTTDKLIFQSNFILFLHHFSSKLSEYFKERVK-EEEEEFRGLRLKKM-KKFMQSQTLQ 204

Query: 64  IWVQTVNLWF-LFGLSYTEGIKRPRGNRPSLQTGELDKT--------------------- 123
               T+NLWF L GLSY EG  RPRGNRPSLQTG+LDKT                     
Sbjct: 205 NLGATINLWFVLIGLSYPEGTMRPRGNRPSLQTGKLDKTVIFQLSTLSVLRDNDAVLILF 264

Query: 124 -------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGI-----VRGDDVCWLHAVF 160
                  VEIEL +PDTLPT AES  S+SSTW  +   S  +     +    +  LH VF
Sbjct: 265 KMFPTFQVEIELPMPDTLPTFAESFESNSSTWLELYFESVHVEMFCYLTNQVMSGLHLVF 324

[Close]
BLAST of Spg037177 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-27
Identity = 79/137 (57.66%), Postives = 83/137 (60.58%), Query Frame = 0 

Query: 68  TVNLWF-LFGLSYTEGIKRPRGNRPSLQTGELDKT-----------------VEIELLVP 127
           TVNLWF LFGL Y EG KRPRGNR SLQTGELDKT                 VEIEL VP
Sbjct: 12  TVNLWFVLFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVP 71

Query: 128 DTLPTSAESSRSSSSTW---------------------------FSVSIGSTGIVRGDDV 160
           DTLPTSAESS S+SSTW                           F+VS+GST IVRGD+V
Sbjct: 72  DTLPTSAESSGSNSSTWLELNFEFVHVEIFYYFTNQVMSGLHLVFNVSVGSTRIVRGDNV 131

[Close]
BLAST of Spg037177 vs. NCBI nr
Match: TYK04298.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 8.2e-23
Identity = 90/177 (50.85%), Postives = 97/177 (54.80%), Query Frame = 0 

Query: 4   TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRG----LRSKKIGKSSCKA 63
           TKPTT   IFQ NFISF HHFP KL EHFEERVK EEEEEFR     LR +  G SS   
Sbjct: 15  TKPTTYKLIFQRNFISFLHHFPSKLLEHFEERVK-EEEEEFRAIQKELRDESTGFSSKPG 74

Query: 64  SHC----RIWVQTV---NLWFLFGLSYTEGIK---RPRGNRPSLQTGELDKT-------- 123
                   + +Q V   N      +   +  K    PRGNR SLQTGELDKT        
Sbjct: 75  GFLVFSDALSIQEVHKSNQKLYLDIESGKSGKWDVMPRGNRSSLQTGELDKTVIFLLSTL 134

Query: 124 ---------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGIVRGDDVCWLHAVF 150
                    VEIEL VPD LPTSA+SS S+       SIGSTGIVRGDDV WL   F
Sbjct: 135 SVLRDNDAVVEIELPVPDRLPTSAQSSGSN-------SIGSTGIVRGDDVYWLTPSF 183

[Close]
BLAST of Spg037177 vs. NCBI nr
Match: KAA0064296.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01032.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 7.0e-22
Identity = 77/161 (47.83%), Postives = 83/161 (51.55%), Query Frame = 0 

Query: 68  TVNLWF-LFGLSYTEGIK----------------------------------------RP 127
           TVNLWF LFGLSY EG K                                        +P
Sbjct: 496 TVNLWFVLFGLSYQEGTKSTGFSSKPGRFLVFSDALSILKVPKSNQKLYLDIESGKSGKP 555

Query: 128 RGNRPSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTW--- 160
           RGN+PSLQTGELDKT                 VEIEL VPDTLPTSAES  S+SS +   
Sbjct: 556 RGNKPSLQTGELDKTVIFPLSTFSVLHDNDAVVEIELSVPDTLPTSAESYGSNSSYFTNQ 615

[Close]
BLAST of Spg037177 vs. ExPASy TrEMBL
Match: A0A5D3CAC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00040 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.2e-33
Identity = 111/271 (40.96%), Postives = 121/271 (44.65%), Query Frame = 0 

Query: 12  IFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRSKKIGKSSCKASHCRIWVQTVN- 71
           +FQPNFISF HHFP KLSEHFEERVK EEEEEFRGLR KKIGKSSCKA+HCRIW    + 
Sbjct: 56  LFQPNFISFLHHFPSKLSEHFEERVK-EEEEEFRGLRLKKIGKSSCKANHCRIWSTGFSS 115

Query: 72  -----LWFLFGLSYTEGIK-------------------RPRGNRPSLQTGELDK------ 131
                L F   LS  E  K                    PRGNR SLQTG+LDK      
Sbjct: 116 KPRGFLVFSDALSILEVQKSNQKLYWDIESGKSGKWDVMPRGNRSSLQTGQLDKIEISID 175

Query: 132 ------------------------------------------------------------ 160
                                                                       
Sbjct: 176 YMTEILSLRLYGTVCPQVIFPLSTLSVLRDNDAVVSVGQTHYDKDDGVPGGPHYIVGLVN 235

[Close]
BLAST of Spg037177 vs. ExPASy TrEMBL
Match: A0A5A7UGD0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00750 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 6.3e-29
Identity = 93/190 (48.95%), Postives = 109/190 (57.37%), Query Frame = 0 

Query: 4   TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRGLRSKKIGKSSCKASHCR 63
           TKPTTD  IFQ NFI F HHF  KLSE+F+ERVK EEEEEFRGLR KK+ K   ++   +
Sbjct: 145 TKPTTDKLIFQSNFILFLHHFSSKLSEYFKERVK-EEEEEFRGLRLKKM-KKFMQSQTLQ 204

Query: 64  IWVQTVNLWF-LFGLSYTEGIKRPRGNRPSLQTGELDKT--------------------- 123
               T+NLWF L GLSY EG  RPRGNRPSLQTG+LDKT                     
Sbjct: 205 NLGATINLWFVLIGLSYPEGTMRPRGNRPSLQTGKLDKTVIFQLSTLSVLRDNDAVLILF 264

Query: 124 -------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGI-----VRGDDVCWLHAVF 160
                  VEIEL +PDTLPT AES  S+SSTW  +   S  +     +    +  LH VF
Sbjct: 265 KMFPTFQVEIELPMPDTLPTFAESFESNSSTWLELYFESVHVEMFCYLTNQVMSGLHLVF 324

[Close]
BLAST of Spg037177 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 79/137 (57.66%), Postives = 83/137 (60.58%), Query Frame = 0 

Query: 68  TVNLWF-LFGLSYTEGIKRPRGNRPSLQTGELDKT-----------------VEIELLVP 127
           TVNLWF LFGL Y EG KRPRGNR SLQTGELDKT                 VEIEL VP
Sbjct: 12  TVNLWFVLFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVP 71

Query: 128 DTLPTSAESSRSSSSTW---------------------------FSVSIGSTGIVRGDDV 160
           DTLPTSAESS S+SSTW                           F+VS+GST IVRGD+V
Sbjct: 72  DTLPTSAESSGSNSSTWLELNFEFVHVEIFYYFTNQVMSGLHLVFNVSVGSTRIVRGDNV 131

[Close]
BLAST of Spg037177 vs. ExPASy TrEMBL
Match: A0A5D3BZ50 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00270 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.0e-23
Identity = 90/177 (50.85%), Postives = 97/177 (54.80%), Query Frame = 0 

Query: 4   TKPTTDNHIFQPNFISFPHHFPFKLSEHFEERVKEEEEEEFRG----LRSKKIGKSSCKA 63
           TKPTT   IFQ NFISF HHFP KL EHFEERVK EEEEEFR     LR +  G SS   
Sbjct: 15  TKPTTYKLIFQRNFISFLHHFPSKLLEHFEERVK-EEEEEFRAIQKELRDESTGFSSKPG 74

Query: 64  SHC----RIWVQTV---NLWFLFGLSYTEGIK---RPRGNRPSLQTGELDKT-------- 123
                   + +Q V   N      +   +  K    PRGNR SLQTGELDKT        
Sbjct: 75  GFLVFSDALSIQEVHKSNQKLYLDIESGKSGKWDVMPRGNRSSLQTGELDKTVIFLLSTL 134

Query: 124 ---------VEIELLVPDTLPTSAESSRSSSSTWFSVSIGSTGIVRGDDVCWLHAVF 150
                    VEIEL VPD LPTSA+SS S+       SIGSTGIVRGDDV WL   F
Sbjct: 135 SVLRDNDAVVEIELPVPDRLPTSAQSSGSN-------SIGSTGIVRGDDVYWLTPSF 183

[Close]
BLAST of Spg037177 vs. ExPASy TrEMBL
Match: A0A5A7VD33 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00370 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.4e-22
Identity = 77/161 (47.83%), Postives = 83/161 (51.55%), Query Frame = 0 

Query: 68  TVNLWF-LFGLSYTEGIK----------------------------------------RP 127
           TVNLWF LFGLSY EG K                                        +P
Sbjct: 496 TVNLWFVLFGLSYQEGTKSTGFSSKPGRFLVFSDALSILKVPKSNQKLYLDIESGKSGKP 555

Query: 128 RGNRPSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRSSSSTW--- 160
           RGN+PSLQTGELDKT                 VEIEL VPDTLPTSAES  S+SS +   
Sbjct: 556 RGNKPSLQTGELDKTVIFPLSTFSVLHDNDAVVEIELSVPDTLPTSAESYGSNSSYFTNQ 615

The following BLAST results are available for this feature:
BLAST of Spg037177 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK08801.16.7e-3340.96hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa][more]
KAA0053276.11.3e-2848.95uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa][more]
KAA0051980.12.5e-2757.66DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D... [more]
TYK04298.18.2e-2350.85pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
KAA0064296.17.0e-2247.83putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK... [more]
BLAST of Spg037177 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg037177 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CAC63.2e-3340.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UGD06.3e-2948.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U9X41.2e-2757.66DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BZ504.0e-2350.85Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7VD333.4e-2247.83Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
BLAST of Spg037177 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037177.1Spg037177.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0016740 transferase activity