Spg037170 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg037170
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold5: 23948129 .. 23949075 (+)
RNA-Seq Expression	Spg037170
Synteny	Spg037170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGATATTGAGCCCGAGGCTATACGGTACCGTGTGCACACAGGTTAGATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTAGCTAGATTTTTAATGACGAACTTGCGAGGTATTTTAGAAAGCCTTTATCATTACACGTTTATGCTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTTCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTTCCACATTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGATTAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTCTTGTAAGGATTGGATAATTTTCGGTTGTGTAAGTCCTAGAGGTCGTGGTTGTTTAAACCCCGGTTGTATATGTTTTTGGTTGTGATATCTATATCAGATTATTTTCCAAACCGAGTTATGTCAGGGCGGCACCTCGTGTATGTTAAAAGTGTTTTCAGGGATTCCGCTGTGTTCTGTTTCATGTAGAATGTTTTATATTTATGATTAGTATGTTTATCAGGATCAGCGTTCGGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGAGAGGGGGTGTGACAAAACCTTTGCATTCAAGTCAAACCCTCAACTCTCCATATTCTCCATCGTGA

mRNA sequence

ATGACTGAGATATTGAGCCCGAGGCTATACGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGATTAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTCTTGATCAGCGTTCGGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGAGAGGGGGTGTGACAAAACCTTTGCATTCAAGTCAAACCCTCAACTCTCCATATTCTCCATCGTGA

Coding sequence (CDS)

ATGACTGAGATATTGAGCCCGAGGCTATACGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGATTAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTCTTGATCAGCGTTCGGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGAGAGGGGGTGTGACAAAACCTTTGCATTCAAGTCAAACCCTCAACTCTCCATATTCTCCATCGTGA

Protein sequence

MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPRGGVTKPLHSSQTLNSPYSPS

Homology

[Close]

BLAST of Spg037170 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-21
Identity = 63/110 (57.27%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS  +SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVYIVNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPRGGVTKP 94
           LY+E V++    ++        + EDDV WLHA+FRAK AGGP GGV  P
Sbjct: 61  LYVEFVHVEMFWLA------GIVREDDVCWLHAVFRAKTAGGPGGGVMPP 104

[Close]

BLAST of Spg037170 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-21
Identity = 63/110 (57.27%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS  +SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVYIVNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPRGGVTKP 94
           LY+E V++    ++        + EDDV WLHA+FRAK AGGP GGV  P
Sbjct: 61  LYVEFVHVEMFWLA------GIVREDDVCWLHAVFRAKTAGGPGGGVMPP 104

[Close]

BLAST of Spg037170 vs. NCBI nr
Match: TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-18
Identity = 63/118 (53.39%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 1    MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVE 60
            MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE    +SSTW+E
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345

Query: 61   LYIESVYIVNVLI---SVR-------EGQRVSLEEDDVRWLHAIFRAKLAGGPRGGVT 92
            LY+ESV++  +      VR       EG    +  DDV WLHA+FRAK AGGP GGVT
Sbjct: 1346 LYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVT 1403

[Close]

BLAST of Spg037170 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 9.1e-18
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI--------- 60
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS  + +TW+ELY ESV++         
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  ----VNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPRGGVT 92
               ++++ +V  G    +  DDV WLHA+FR K A  P   VT
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPGECVT 104

[Close]

BLAST of Spg037170 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-15
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 17  VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI-------------VNVLISVREGQR 76
           VEIELPVPDTLPTSAESS  +SSTW+ELY ESV++             ++++ SV  G  
Sbjct: 94  VEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGST 153

Query: 77  VSLEEDDVRWLHAIFRAKLAGGPRGGVT 92
             +  DDV WLHA+FRAK  GGP GGVT
Sbjct: 154 GIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]

BLAST of Spg037170 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.6e-22
Identity = 63/110 (57.27%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS  +SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVYIVNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPRGGVTKP 94
           LY+E V++    ++        + EDDV WLHA+FRAK AGGP GGV  P
Sbjct: 61  LYVEFVHVEMFWLA------GIVREDDVCWLHAVFRAKTAGGPGGGVMPP 104

[Close]

BLAST of Spg037170 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.6e-22
Identity = 63/110 (57.27%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS  +SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVYIVNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPRGGVTKP 94
           LY+E V++    ++        + EDDV WLHA+FRAK AGGP GGV  P
Sbjct: 61  LYVEFVHVEMFWLA------GIVREDDVCWLHAVFRAKTAGGPGGGVMPP 104

[Close]

BLAST of Spg037170 vs. ExPASy TrEMBL
Match: A0A5D3CCC7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00430 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18
Identity = 63/118 (53.39%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 1    MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVE 60
            MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE    +SSTW+E
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345

Query: 61   LYIESVYIVNVLI---SVR-------EGQRVSLEEDDVRWLHAIFRAKLAGGPRGGVT 92
            LY+ESV++  +      VR       EG    +  DDV WLHA+FRAK AGGP GGVT
Sbjct: 1346 LYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVT 1403

[Close]

BLAST of Spg037170 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.4e-18
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI--------- 60
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS  + +TW+ELY ESV++         
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  ----VNVLISVREGQRVSLEEDDVRWLHAIFRAKLAGGPRGGVT 92
               ++++ +V  G    +  DDV WLHA+FR K A  P   VT
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPGECVT 104

[Close]

BLAST of Spg037170 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 17  VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI-------------VNVLISVREGQR 76
           VEIELPVPDTLPTSAESS  +SSTW+ELY ESV++             ++++ SV  G  
Sbjct: 94  VEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGST 153

Query: 77  VSLEEDDVRWLHAIFRAKLAGGPRGGVT 92
             +  DDV WLHA+FRAK  GGP GGVT
Sbjct: 154 GIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

The following BLAST results are available for this feature:

BLAST of Spg037170 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27998.1	1.8e-21	57.27	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066851.1	1.8e-21	57.27	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK08952.1	2.4e-18	53.39	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0062407.1	9.1e-18	52.88	uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0062409.1	2.5e-15	55.68	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Spg037170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg037170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DX39	8.6e-22	57.27	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VMG9	8.6e-22	57.27	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3CCC7	1.2e-18	53.39	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V638	4.4e-18	52.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V9N3	1.2e-15	55.68	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]

BLAST of Spg037170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg037170.1	Spg037170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity