Spg037136 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037136
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold1: 52251532 .. 52253490 (-)
RNA-Seq ExpressionSpg037136
SyntenySpg037136
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATGAAATGGAATAATGAAGAAAAGGAATCAGGGAAAATGGAACAAAAGTGAAAAAGGAAAAGGAAAGAAAACCAAAAAAAAAAAAAGAGAAAAGAAAGGAAGTGGAAATGGACAGCTTAATACCCACCACCGCCAAAGTGATCCCAACCCATTTTTAGTCATTTCAAGCCATTTTTCCTCATGTTTCCCATCCAAATCTTCAGAGCACTTGAGGGAGAGGGTGAAGGAAGAAGAAGAAGAAGAATTTTGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAGCCAGCCATTGCAGAATCTGAGTTCACCTGTCGACCTCTGGTTTTATATTCGGTTTGAGCTACACAGAAGGCACTAAGAGATAACGTTTGATTTTCTTGAAAGTTAGTTCATTTTCTAACAAATTTCATAAAGGCAGCTTGAGCTAAATCGTATGAGAAGTGAAGGGTTTTTGGAATGGAAAATAGAGCACAGGATTTTCGAGCAAACCAGAGGATCCTGGTGTTCTCTGATGTTTTGAGTATTTTGGGGTGCACAAGTCGAATCAGAAGCTCTTTGGGTATGGTTTGAAAGCTTATTCAATTCCCTAAAACTTTCAAGAAGATCGTGTGAGCCAAAAATGACTTTACGTAGGAGTAATTGCAGGAGATAGATAAAGAGTAGCAGAGAACCTCGAATTCTGTATTGTCTGTGTTCGAGGCAATTCTGGACAAATCGGTTGGGAATCCCGGTTTCCTTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTACATTAATTGTGGTTAAGTATTGAGGAATTTATGAGTGTGGAAGTTGTGGTGTTGAATCTGGAAATCTGGAAAAGTAGAATGTGAAGTGAGATTTCTTATCCAATTGTCTAGAATTCATGAGCATGGAAAGACAAAGCTATCTATAGTTCTAATGCTCAGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACAGTGAGTGACAAAATGAATTTCGAAAATTGTTTCAAACGGTTGTTCATGTTTAGACGTTTTATATGCTTTTCCATGAATGATATATGATTTCTATGAATGGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAATGATCTTTATATACTAGCACGTGGTTAATAACTTTATGAAAAGTATTTGAAACGATATCTTTAAAGTAAAGTATGTATTAGCAAGTACTTCAAAATGATTTTCAGTTTTTAACGAGCAAGTTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTAAGATATTGAGTCCGAGGCTATATGGTACCGTGTGCACACAGGTTTATTCCGTGGTCGACGTTGAGTGAACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCACTACGACATAGACGATGGAAGTGCTGGGCGGGCCCCAATACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGTGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGTTTTACTTGTTATGCCTTGCTATGTTCTTAATGACGAACTTGCGAAATGTTTTAGAGAGAATTTATCCGTACACGTTTATGTTAAACGCTTTGATTGAGGCATATTTATACATTTAAAGGTTTATCACGTGTTTTGACTTTCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCATAGCTCATTCTTTCAAAATGTTTTCAACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAACTCTAGTACATGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTGCAAGGATTGGATAATATCGTCCTAG

mRNA sequence

atggaaaatagagcacaggattttcgAGCAAACCAGAGGATCCTGGTGTTCTCTGATGTTTTGAGTATTTTGGGGTGCACAAGTCGAATCAGAAGCTCTTTGGGCAATTCTGGACAAATCGGTTGGGAATCCCGGTTTCCTTTCTTCAGGTTTATTCCGTGGTCGACGTTGAGTGAACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCACTACGACATAGACGATGGAAGTGCTGGGCGGGCCCCAATACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGTGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAACTCTAGTACATGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTGCAAGGATTGGATAATATCGTCCTAG

Coding sequence (CDS)

ATGGAAAATAGAGCACAGGATTTTCGAGCAAACCAGAGGATCCTGGTGTTCTCTGATGTTTTGAGTATTTTGGGGTGCACAAGTCGAATCAGAAGCTCTTTGGGCAATTCTGGACAAATCGGTTGGGAATCCCGGTTTCCTTTCTTCAGGTTTATTCCGTGGTCGACGTTGAGTGAACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCACTACGACATAGACGATGGAAGTGCTGGGCGGGCCCCAATACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGTGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAACTCTAGTACATGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTGCAAGGATTGGATAATATCGTCCTAG

Protein sequence

MENRAQDFRANQRILVFSDVLSILGCTSRIRSSLGNSGQIGWESRFPFFRFIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQRRSVMLVEIELPVPDTLPTSAESSRTNSSTWVELYIESVHIVNVCKDWIISS
Homology
[Close]
BLAST of Spg037136 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 2.6e-26
Identity = 80/137 (58.39%), Postives = 86/137 (62.77%), Query Frame = 0 

Query: 15  LVFSDVLSILGCTSR-----------IRSSLGNSGQIGWESRFPFFRFIPWSTLSELRDN 74
           LVFSD LSIL                 RSSL  +G++    RF        STLS LRDN
Sbjct: 497 LVFSDALSILEVQKSNQKLYLVWPRGNRSSL-QTGELDKTVRFSL------STLSVLRDN 556

Query: 75  DAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQRRSVML----------VEIEL 131
           DAVVSAG  HYD DDG+A RAP+HRRTSKRWLYW CPT RRSVML          VEIEL
Sbjct: 557 DAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIEL 616

[Close]
BLAST of Spg037136 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 2.6e-26
Identity = 80/137 (58.39%), Postives = 86/137 (62.77%), Query Frame = 0 

Query: 15  LVFSDVLSILGCTSR-----------IRSSLGNSGQIGWESRFPFFRFIPWSTLSELRDN 74
           LVFSD LSIL                 RSSL  +G++    RF        STLS LRDN
Sbjct: 83  LVFSDALSILEVQKSNQKLYLVWPRGNRSSL-QTGELDKTVRFSL------STLSVLRDN 142

Query: 75  DAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQRRSVML----------VEIEL 131
           DAVVSAG  HYD DDG+A RAP+HRRTSKRWLYW CPT RRSVML          VEIEL
Sbjct: 143 DAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIEL 202

[Close]
BLAST of Spg037136 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 6.8e-14
Identity = 54/95 (56.84%), Postives = 61/95 (64.21%), Query Frame = 0 

Query: 53  PWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPT----QRRSVML 112
           P STLS L DNDAVV            SAG+AP+ +R   RW     PT    +  S  L
Sbjct: 102 PLSTLSVLSDNDAVV------------SAGQAPLRQR---RWECRTGPTTSFFKMFSTFL 161

Query: 113 VEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI 144
           VEIELPVPD LPTSAESSR+NSSTW+ELY ESVH+
Sbjct: 162 VEIELPVPDILPTSAESSRSNSSTWLELYFESVHV 181

[Close]
BLAST of Spg037136 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 6.8e-14
Identity = 54/95 (56.84%), Postives = 61/95 (64.21%), Query Frame = 0 

Query: 53  PWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPT----QRRSVML 112
           P STLS L DNDAVV            SAG+AP+ +R   RW     PT    +  S  L
Sbjct: 102 PLSTLSVLSDNDAVV------------SAGQAPLRQR---RWECRTGPTTSFFKMFSTFL 161

Query: 113 VEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI 144
           VEIELPVPD LPTSAESSR+NSSTW+ELY ESVH+
Sbjct: 162 VEIELPVPDILPTSAESSRSNSSTWLELYFESVHV 181

[Close]
BLAST of Spg037136 vs. NCBI nr
Match: KAA0041324.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 4.4e-13
Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 0 

Query: 51  FIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQRRSVMLVE 110
           +I   TLS LRDN+ VVS  R     DDGSAGR P+HRRTSKRWLYW CPTQR  VMLV+
Sbjct: 771 YISLLTLSVLRDNNVVVSVERVPLVKDDGSAGRTPLHRRTSKRWLYWACPTQRNEVMLVK 830

[Close]
BLAST of Spg037136 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 80/137 (58.39%), Postives = 86/137 (62.77%), Query Frame = 0 

Query: 15  LVFSDVLSILGCTSR-----------IRSSLGNSGQIGWESRFPFFRFIPWSTLSELRDN 74
           LVFSD LSIL                 RSSL  +G++    RF        STLS LRDN
Sbjct: 497 LVFSDALSILEVQKSNQKLYLVWPRGNRSSL-QTGELDKTVRFSL------STLSVLRDN 556

Query: 75  DAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQRRSVML----------VEIEL 131
           DAVVSAG  HYD DDG+A RAP+HRRTSKRWLYW CPT RRSVML          VEIEL
Sbjct: 557 DAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIEL 616

[Close]
BLAST of Spg037136 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 80/137 (58.39%), Postives = 86/137 (62.77%), Query Frame = 0 

Query: 15  LVFSDVLSILGCTSR-----------IRSSLGNSGQIGWESRFPFFRFIPWSTLSELRDN 74
           LVFSD LSIL                 RSSL  +G++    RF        STLS LRDN
Sbjct: 83  LVFSDALSILEVQKSNQKLYLVWPRGNRSSL-QTGELDKTVRFSL------STLSVLRDN 142

Query: 75  DAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQRRSVML----------VEIEL 131
           DAVVSAG  HYD DDG+A RAP+HRRTSKRWLYW CPT RRSVML          VEIEL
Sbjct: 143 DAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIEL 202

[Close]
BLAST of Spg037136 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.3e-14
Identity = 54/95 (56.84%), Postives = 61/95 (64.21%), Query Frame = 0 

Query: 53  PWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPT----QRRSVML 112
           P STLS L DNDAVV            SAG+AP+ +R   RW     PT    +  S  L
Sbjct: 102 PLSTLSVLSDNDAVV------------SAGQAPLRQR---RWECRTGPTTSFFKMFSTFL 161

Query: 113 VEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI 144
           VEIELPVPD LPTSAESSR+NSSTW+ELY ESVH+
Sbjct: 162 VEIELPVPDILPTSAESSRSNSSTWLELYFESVHV 181

[Close]
BLAST of Spg037136 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.3e-14
Identity = 54/95 (56.84%), Postives = 61/95 (64.21%), Query Frame = 0 

Query: 53  PWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPT----QRRSVML 112
           P STLS L DNDAVV            SAG+AP+ +R   RW     PT    +  S  L
Sbjct: 102 PLSTLSVLSDNDAVV------------SAGQAPLRQR---RWECRTGPTTSFFKMFSTFL 161

Query: 113 VEIELPVPDTLPTSAESSRTNSSTWVELYIESVHI 144
           VEIELPVPD LPTSAESSR+NSSTW+ELY ESVH+
Sbjct: 162 VEIELPVPDILPTSAESSRSNSSTWLELYFESVHV 181

[Close]
BLAST of Spg037136 vs. ExPASy TrEMBL
Match: A0A5A7TCY8 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003250 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 0 

Query: 51  FIPWSTLSELRDNDAVVSAGRAHYDIDDGSAGRAPIHRRTSKRWLYWVCPTQRRSVMLVE 110
           +I   TLS LRDN+ VVS  R     DDGSAGR P+HRRTSKRWLYW CPTQR  VMLV+
Sbjct: 771 YISLLTLSVLRDNNVVVSVERVPLVKDDGSAGRTPLHRRTSKRWLYWACPTQRNEVMLVK 830

The following BLAST results are available for this feature:
BLAST of Spg037136 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065516.12.6e-2658.39uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa][more]
TYJ98800.12.6e-2658.39uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa][more]
KAA0037581.16.8e-1456.84reverse transcriptase [Cucumis melo var. makuwa][more]
TYK03091.16.8e-1456.84reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0041324.14.4e-1366.67DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of Spg037136 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg037136 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VGQ51.3e-2658.39Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BG851.3e-2658.39Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BTP33.3e-1456.84Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5A7T7M63.3e-1456.84Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7TCY82.1e-1366.67DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of Spg037136 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037136.1Spg037136.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding