Spg037093 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037093
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Locationscaffold1: 52191732 .. 52197687 (-)
RNA-Seq ExpressionSpg037093
SyntenySpg037093
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTTAGAATGGAAAACAGAGCACAGGATTTTCAAACAAAGCAGGAGGATATCTGGTTTTCTCTGGTTTTTCGAGCATTCTAGGGTATACAAGATGAACCAGCAGCTCTATTTGGTACGGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAAGAATTTGTGAGCCCCAAATGACTTGAAGTAGGTTTAATTTCAGGAGAAATATAGAGGTAGCAGAGAAGCTCGAATCTGTGTTGTCTGAGTTCAGGGCACATCTGAACAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGGAAATGAAGAGTTTGATGTATAGTACATAAATTTGGGTTAAGTATTGAGGAAGTTATGAGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAAGTAGAATGTGAAGTGTGATTTTTTATTCAAGTGTCTAGAAATCATGAGCATGGAAGAATAAGACTATCAATGGTTCTAATGCTCGGTTTTGGTTGTTTGACACGCCAAGAGGAAATAGGTTGAGTCTACAGACCAGGGAACTAGCTAAGACAGTGAGTGACAAAACAAATGTCGAAAATTGTTTCCAACGGTTGTTCTTGTTTAGATGTTTTACATACTTTTCTATGAATGATACATGGTTTTTATGAATGGTATCAAGCTTAAGTTATGAGCTTAAATTTTCTAATGAGGTTTATAAAGGAGCACGTGATTATTGAGTTTCTGAAAAATAGTTGAAATGACTTCCTTTTAAGCCAAGCATGTATTAGCAAGAATTATTTAAAGATTTTCGGTTTTTCCACGAGCAAGCTGAGTAAGCTTGAGTTTTACAAAAGATAACGATAAACAGGCATGTTCTAACGTTTTCATTTGATTTTTTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCTTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCATGACAACGATGCTTTTGTGAGTGTTGGGCGGACCCCACTACGACAAAGATGATAGGAGTGTTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATTGGTCATGTTAGTTAAAACGTTTGATGTACTCTATATGCCTTGCTAGATTTTTAATGAAGAACCTGCGATGTTTTAAGAAAGCTTTTATCGTTACACGTTTATGTTTAACGCCTTAGTTGAGCTGCTTTATGTGTTTAAAGTTTTATCACGTGTTCTGACTTCTGAATGTACAGTTTTAAGTTTAGTCACTCACTGGGCTTCACAACTCATTCTTTCAAATGTTTTTCCACTTTTCAGGTAGAGGCCGAGCTCCCGGTGCCTAATACACTGCCAATGTCTGCTGAAAGTTTCGTATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAATTTTTTGTAAGGATTGGATAATTTAGGCCTAAAGGTCGTGGTTGTATAAACCCCGATGGTATATGTTTTTTGTTGTGATATCTATATTAGGTTATTTTCCAAACTGAGTTATGTCAGGGCGGCACCACGTGTATGTTGGATGGTTTTCAGGGATTCCGCTTTGTTGTGTTTCATTTAGAATATTTTATATCTAAGATTAGTATGTTTATCAGGTTCAACATTTCAGGAGGGTCGAGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGAACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTTACAGTGAGAAGTCTGTTTCTGAGCATTTGAGTGACTTCCAAGATATTATTAACAAGTTGACTACTATGAAGATTGTTCTTGATGATGAATTGCAGGCTTTGTTCTTGTTGAGGTCTTTGTCGGACAGTTGGGAAACTTTGGTTGTGACTATTAGTAACTCTACTCCATAAGGTGTTTTGTCTTTGAATATTATTAAAGAAAGCATGTTCAATGAAGAGATAAGAAGAAAGGAGATGGGAGTTGATAATTCACATGCTCTGGTTATTGAGAATCGTGGAAGAAACAAGAGTAGGAAACCCAAAGGTCGTGGTAACTCAAAAGGGAGGTCCAAGTCTAGAGACAAAGAGACTAGGACATGTCATTACTGCAACAAGCCTGACCATATCAAAACATTTTGCTACATTGGAAGAAAGAACAAGGTAAGAAGCAAGACTCACAAAAAGAGGGAGATGATAGGAATACTGCAACAATCACTTCTAAGAGTGATGATGATGTCACTTTGATTTGTGCAACTAGTGAGTGTCAACATGTAAAGAGTTCAGATACAGAGTGGTTGGTAGATTCGGGTGCTTCATACCATTATGTTCACAAAAGGGAGTACTTCATGAACTATCAATCTGGTGATTTTGGTAGTGTGAAGATGGGAAACCAGAGCTCAGCTAGCATTGTTGGGTTAGGTGATATTTTTGTGAAGACAAGTGTTGGGTGCATGCTTACATTAAAGAATGTGCGCCATATTCCTGATTTATGCTTTAACTTGTTGTCTGCAAATGTTCTTGATCAAGAAGGATTTCGACATACCCTTGCCGAGGGTAAATGGAAATTGTCTAAGGGTTCAATAACAGTTTCTCGTGGTGAGTTGTGTTGCTCTTTGTATAAAACATACTTGAGTGTATGTTCTTCTGAGAGGGTAAATGGAAATTGGTCTAACGGTTGAATAACAGTTGCCCGTGGTCAGTTGTGTTGCTCTTTGTATAAAACATACTTGAGTGTATGTTCTTCTGAGCTGAATGCAGTTGAAGAAAATAATTCTCCTAACTTGTGGCATCGAAGGCTAGGGCATATGAGTGACAAGGGGATTAAATTGTTGGCAGGTAAATCTCTTATACATGTTGATAACACAGTTCCTCTTGACCTTTGTGATCATTCTTTGGCAGGCAAGCAACATAATGTTTATTTTTCTTGGCAGTCCACCAGAAGGCAAACAAAATTGGAGTTAGTTCACTCTGATGTTTGTGGTCCTATTGAGGTTGTCTCTAGGTGGCAATAGATATTTTGTCACTTTCATTGATGATGCTACTCGAAGAACCTGAGCGTATATGTTGAAGACAAAAAGCCAAGTGTTCGAGATTTTCAAAAAGTTTCATGCCATGGTAGAAATGGAGACCGAAAGAACGTTGAAGCGTCTTCAATCTGACAATGGTGGTGAGTATACTTCAAATGAGTTCAGGTATTATTGTTCACAACATGACATTAGACACGAGAAGACAGAGCCTGGCACACCGAAACACAATGGAGTTGCTGAAAGGATGAACGAAATCATTATAGAGAAGGTGAGGTGCATGCTTAGAATGTTAGATCTTCCTAAGACATTTTTGGCTGAAGCAGTGCAATGTGTCGTGTATTTGATTAATCGATCTCCATCGGTTCCTCTTGGTTTAGACATTCCAAAGAGAGCATGAAAGGGATGTGATCCTACTTATTCACATCTAACAATCTTTGGCAGCAAGGCATACATGCATGTGCCTAAACAACAGAGGTCAAAGCTTGATTCGAAGACCAATGCGTGCGTATTTGTTGGGTATGGGGATGAAGTGTATGGTTACATGCTCTATGATCCAGAAAAGAAGAAGGTAGTGAGAAACAGAGATGTAGTATTCTTTGAGCACGATAAGGGTGTAGATCTTCTGAGTACAAGGTACACTTCAACTTTAGAGTTGTTTCTTGATACTACTATTGATTCTACCTCTAGTTCCTATATTATTTAACCAGAAAATAAGAATGTTGAAGACGTACTGGATGATGTACACAATAATGTTGGTGAGATACAACCTGATGGTAATGTACCAGATCATGTTGATGAAGATAATCTTGACGAGTCTTCATTTGATGAAGAAATCCATGAGGAAGATGTACATGAGAAAGTGATTCATGAAGAAGATCATGAGCAGGGGGAGTGACCTAACCCTCAAGTGGATGATACACAAGTTCGAATGTCCACCAGAGAGCGTAAACTTTCAACAAGGTATCCAAGCTCTGAGTTCAATTTAGTTAGTGAAGATGGGGAGCCAAAGAACAATCAAGAGGTCTTGTCTCATGAGGAAAAAGACCAGTGGCTCGATGCAATGAAGGAATAGATGAATTCCCTGAAAAATAATGAAACCTATGAGTTTGTAAAACCTCCAAAGGGCAAGAAAGTCTTGAGAAATAGATTGGTTTTCAAGTACAAGAAGAATGGTGAGAAGATAATGAAGCTCAAAGCTAGATTAGTGGTAAAGGGTTGCAACCAGAAAAAAAAGGGCATTGACTTTGATGAGATCTTCTCTCTGGTGGTCAAAATGACATATATCAGAACTGGGTAGGGTTTAGCAGTAAGTCTTGATCTTGAGTTTGAGCAATTTGATGTAAAAACTGCATTTTACCATGGTGACTTGCATGAAGATATCTACATGGAGCAACCTGAAGGATTTGAAGAAAAAAGGGAAAGATAAACTTGTTTGTAAGTTGAAGAAGAGTCTTTATGGGCTTAGTCAGGCACCAAGGTAATGGTAGAAGAAATTAAATTTGTTTATGATAAGGAATGGTTATAAACGAACTGCAGCTGATTCTTGTGTGATTAAAAGTTTGAAGAAAGACTTGTCAAAGTCATTTGACATGAAAGATTTAGGTCTTGCAAACCAAAATTTAGGCATGGAGATTGCTTGTGACAGGAAAGCTGGGAAATTATGGTTATCCCAGGAGAAGTATATTGAACGTGTGTTTGAAAAGTTCAATATGAAGCATGTTAAGCCTGTTAGTACACCACTAGCAACTCACTTCAAGCTAAGTAAGACAACTTTTCCTACAACAGAGAAGGAGAAAAAAGTTGTGTCATCAATTCTCTACTTTTCTACTGTTGGTTCTTTGATGTATGCTATGGTGTGTACTAGACCTGATATTACACATGCAGTTGGTTTAGTGAGTCGTTTCTTATCCAATCCAGGTAAGACTCATTGAGAAGCAGTGAAGTGGATTTTTAGATACTTGCGGGGCACCTCCAAAATGAGTTTGTGTTATGGAGGTGACAAACCTATACTTGAAGGCTATACTGATGCAGACATGACAGGTGATTTTTATAATAGAAAGCCTACCTAAGGTTATGTATTTACATTCTGAGTGGGAGCCATCTCATGGAAATCCAAGCTATAAAAATGTGTAGCATTGTGCACAACTGAGGCAGAGATATTGCAGCAGTGGAAGCAAGCAAGGAAATGTTATGCCTTAAAAGGTTTCCTCAAGAGTTGGGTTTGAAGCAACATGAATATGTAGTATTCTGTGATAGGTAGAGTGCTATGAATTCGAGCATGATATTGGGGAATCTCATTGCTATTACTCAAACAAGAAAGAATTCAATGTATCATGCTCGCACCAAACACATTGACATTAGATATCCTTGGTTGCGATATGTGATTGAAGAGAAGAGAATGAAACTGAAGAAAGTTCACACTGACAAGAATAGTGCAGATATGTTGACTAAAGTAGTTCCCAAAAGGAAGATTGAGCTTTGTAGTAAGCCTACCGGGATGAGGTTCAAGTGATCATGGATGTGATTGTGTCTTCCTCGTGATGGGCTGATAATTCCAATTTATTATACACTTAGAATTTCCCAATTTGCTTATCTTAGTTGAATTCCTTGCGAAAAATGCTTTAAAATGAGTATAATATGTCTATAGGTCCTCACCGGAGCTTTGGAAGCAATTCGGGGCTTAAACTAGCAAAACCAAAGCGTAAAATGACCATTCTGCCCCTGGAGCCGTCGCAACGTCGAGACACTGCTGTTGAAGGGTCGGGACGCTGCTCAAATAAGGAAAAGTCGTGGCGCCAAGTTGAGGCGGGAGCGTCGCGACGCTCTCGCCATAGCGTCTCGACGCTATGTCAATCCGCATATCTTTTCCATAGTTGA

mRNA sequence

ATGGTTTTTAGAATGGAAAACAGAGCACAGGATTTTCAAACAAAGCAGGAGGATATCTGGAGAAATATAGAGGTAGCAGAGAAGCTCGAATCTGTGTTGTCTGAGTTCAGGGCACATCTGAACAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCATGACAACGATGCTTTTGTAGAGGCCGAGCTCCCGGTGCCTAATACACTGCCAATGTCTGCTGAAAGTTTCGTATCAAGCTCCAGTCCTCACCGGAGCTTTGGAAGCAATTCGGGGCTTAAACTAGCAAAACCAAAGCGTAAAATGACCATTCTGCCCCTGGAGCCGTCGCAACGTCGAGACACTGCTGTTGAAGGGTCGGGACGCTGCTCAAATAAGGAAAAGTCGTGGCGCCAAGTTGAGGCGGGAGCGTCGCGACGCTCTCGCCATAGCGTCTCGACGCTATGTCAATCCGCATATCTTTTCCATAGTTGA

Coding sequence (CDS)

ATGGTTTTTAGAATGGAAAACAGAGCACAGGATTTTCAAACAAAGCAGGAGGATATCTGGAGAAATATAGAGGTAGCAGAGAAGCTCGAATCTGTGTTGTCTGAGTTCAGGGCACATCTGAACAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCATGACAACGATGCTTTTGTAGAGGCCGAGCTCCCGGTGCCTAATACACTGCCAATGTCTGCTGAAAGTTTCGTATCAAGCTCCAGTCCTCACCGGAGCTTTGGAAGCAATTCGGGGCTTAAACTAGCAAAACCAAAGCGTAAAATGACCATTCTGCCCCTGGAGCCGTCGCAACGTCGAGACACTGCTGTTGAAGGGTCGGGACGCTGCTCAAATAAGGAAAAGTCGTGGCGCCAAGTTGAGGCGGGAGCGTCGCGACGCTCTCGCCATAGCGTCTCGACGCTATGTCAATCCGCATATCTTTTCCATAGTTGA

Protein sequence

MVFRMENRAQDFQTKQEDIWRNIEVAEKLESVLSEFRAHLNKLVGNLVFISSGYIPLLTLSVLHDNDAFVEAELPVPNTLPMSAESFVSSSSPHRSFGSNSGLKLAKPKRKMTILPLEPSQRRDTAVEGSGRCSNKEKSWRQVEAGASRRSRHSVSTLCQSAYLFHS
Homology
[Close]
BLAST of Spg037093 vs. NCBI nr
Match: KAA0061963.1 (hypothetical protein E6C27_scaffold89G002570 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-04
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 53  GYIPLLTLSVLHDNDAFVEAELPVPNTLPMSAESFVSSSSPHRSFG 99
           GY+PLLTLS+LH+NDA VE E PVP+ LP SAE+ +S ++   ++G
Sbjct: 72  GYVPLLTLSILHENDAIVEIEFPVPDRLPESAEALISIANMWFTYG 117

[Close]
BLAST of Spg037093 vs. NCBI nr
Match: KAA0025163.1 (hypothetical protein E6C27_scaffold2405G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-04
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 56  PLLTLSVLHDNDAFVEAELPVPNTLPMSAESFVSSS 92
           PL TLSVLHDNDA VE ELPVP+TLP SAESF S+S
Sbjct: 69  PLSTLSVLHDNDAVVENELPVPDTLPTSAESFESNS 104

[Close]
BLAST of Spg037093 vs. NCBI nr
Match: KAA0067816.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-04
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 57 LLTLSVLHDNDAFVEAELPVPNTLPMSAESFVSSS 92
          L TLSVL+DNDAFVE ELPVPNTLP SAESF S+S
Sbjct: 57 LSTLSVLYDNDAFVEIELPVPNTLPTSAESFRSNS 91

[Close]
BLAST of Spg037093 vs. ExPASy TrEMBL
Match: A0A5A7V1D5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002570 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.7e-05
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 53  GYIPLLTLSVLHDNDAFVEAELPVPNTLPMSAESFVSSSSPHRSFG 99
           GY+PLLTLS+LH+NDA VE E PVP+ LP SAE+ +S ++   ++G
Sbjct: 72  GYVPLLTLSILHENDAIVEIEFPVPDRLPESAEALISIANMWFTYG 117

[Close]
BLAST of Spg037093 vs. ExPASy TrEMBL
Match: A0A5A7SKG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2405G00100 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.8e-05
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 56  PLLTLSVLHDNDAFVEAELPVPNTLPMSAESFVSSS 92
           PL TLSVLHDNDA VE ELPVP+TLP SAESF S+S
Sbjct: 69  PLSTLSVLHDNDAVVENELPVPDTLPTSAESFESNS 104

[Close]
BLAST of Spg037093 vs. ExPASy TrEMBL
Match: A0A5A7VMN7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00200 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 57 LLTLSVLHDNDAFVEAELPVPNTLPMSAESFVSSS 92
          L TLSVL+DNDAFVE ELPVPNTLP SAESF S+S
Sbjct: 57 LSTLSVLYDNDAFVEIELPVPNTLPTSAESFRSNS 91

[Close]
BLAST of Spg037093 vs. ExPASy TrEMBL
Match: A0A5D3DK46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00270 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.7e-04
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 49  FISSGYIPLLTLSVLHDNDAFVEAELPVPNTLPMSAESFVSSSSPHRSFG 99
           F   GY+ LLTLS+LH+NDA VE E PVP+ LP SAE+ +S ++   ++G
Sbjct: 99  FDGIGYVSLLTLSILHENDAIVEIEFPVPDRLPESAEALISIANMWFTYG 148

[Close]
BLAST of Spg037093 vs. ExPASy TrEMBL
Match: A0A5A7VI26 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002210 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-04
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 56  PLLTLSVLHDNDAFVEAELPVPNTLPMSAESFVSSSS 93
           PL TLSVL DNDA VE ELPVP+TLP S ESF S+SS
Sbjct: 242 PLSTLSVLRDNDAVVEIELPVPDTLPSSTESFESNSS 278

The following BLAST results are available for this feature:
BLAST of Spg037093 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061963.11.4e-0456.52hypothetical protein E6C27_scaffold89G002570 [Cucumis melo var. makuwa][more]
KAA0025163.11.8e-0480.56hypothetical protein E6C27_scaffold2405G00100 [Cucumis melo var. makuwa][more]
KAA0067816.12.4e-0482.86gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Spg037093 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg037093 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V1D56.7e-0556.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SKG88.8e-0580.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VMN71.1e-0482.86Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G002... [more]
A0A5D3DK465.7e-0452.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VI267.4e-0475.68Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
BLAST of Spg037093 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037093.1Spg037093.1mRNA