Spg037056 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037056
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Locationscaffold6: 28439836 .. 28446438 (-)
RNA-Seq ExpressionSpg037056
SyntenySpg037056
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCCTATCTGCAAGGGATTGTCCTTTCATTTGTATGGGTGAGAGTGACCAGATCGCCGACTCAATATGCTTACCATTTTGGGGACAAGATCGAGGTGGGAGTTGGAAACATAACAACACAAGATGGAATTTGGTCCTTCCGCATTTTGGGTAAGTAGATGTGTGTTCCCTTAAGTGGTGTCTCCGAGACTTGAACAAAGGGTTCGACCCTTTCATTGGCCTGAGAAGGACTTCTGTTTATTAGTTGGATGATAACACCTAATTCATGTTATCTTATTACTGCTAATCTAGACTTGTTAGAATGATTTTACAGTTTATTTGTCTACTTTATCGGTAATTGACATGCGGCGTGGGAGCGCACACCCTGCCCGAGTGCAAGTATACACTATCAAGTAATAAAGTGGAGAGTACTCCGGATATCGAACCCAAGGGAGATGGTGACTAGTCGAAAAATACAAGATTTTGTAAAACAAGAACCTCCTGTAAATCTGCAACCGAAGATGGTAACCAAAAAAAATATTTCTAATGGGGGTTTTGATTTAGGACAAAAATGGAAATAAGCAAGTAAATGAAAACGGTAAAAAAAATTTATGAGATAAGCGAGAAAATTCAAATAGTATCAACGAAAAGCATTAGATTGTGCCCACTTTTGCAAACTTACTCAAGCATTGCAGTCGCATATGTTGCCTACATAGACATGGTGCAGATAGAATCCTCCAGTTGCGCCCGCAAATGCCCTGACAACTAGATTGTGAGTTAAGTCCTACTTCTATTCAGCTTCGCTGTAGGTGCCTTTAGAAGACTAAGCCAACTAGACATCTATTTCTAGGGCTAGCTAAAACTTAGGTAAATAATGCTCACGACTCTTAAAACTCTAGTGGTTCCAGTCCTATTCCTAGGATGCAAGAAGACAAAGTCCTATTTCTATGATCTTTTCCACTATTGTTTTGCGAACCCGTGCATTCAACTCCAACCTTTCGGCCATCAGCTAAACACAAACTATGCTAACTTAAGCGATCAGTTTAAACTAACAATGAAACTTAGACTTCATAAAAACCAAACAATGCTAAGAGGAAGCAAGGTTGCCTTTTGCATAGGTAGGGCTTTCTTCTACTCAAGGTATCCACATATTTGAATTCCCGAGAAAAAACTTAGCTCATAGATGAAAGTAAAGTGTAAGAAATAAAAGAAAGAAACACAAGATAGAAGAATAAACTAGATTCATATTAATTAAAAGGAATGAATACAATAATGATAAACTTACAACTGAGAATTAAAGGAGAATAGAAAACATATAGTTGCTAAAAATAAATACTTAACAGAAAAGTAAAGACTCGACTCGACTGAGGATCTTCCTCTCTCTATCTAGCTTGCTCTTGTCCTCTTTCAAGGGGAGACAAGCCTTTCTCTTTTTCTTCTTTCGAATGGAAGAGCCGACAGAGGCTGAAAGACCTAGAACTCGGAGTGGTTACAAGATGAGAAGAGAGAAAAACAAAAACTATCCTAAGGACGAATTTTCGAGCTTTCGTTGCTTCTTGGATCTTGATCGCCTTTTATAGACCTTGGAAGGTAGGGTTGACTACCGAGATCAGTGTAAGACAGCCTTAGAAGGTAAAATTCCACGATCCTTGGAGATTTGATACGAGATTTGGGATTTTTGGATGATTCTGTGAAGATCCCACGAATCTCGATATTCTGTCAGAAAGCCCAGTTTCGGCCGCAAAGTCAGGCATAAATCTTTGTGCAGTGCCTTGTAACTTCTGTCTTCAGCTGGGACTACTTTCCTTATTGGTTTGCGAGTGCATTTCAAACACATCTTCCACATCTTCAGGACCAGAGTGGGTACAAATCTACAACTTCTACTCTTTTGCTCCACTACTTTTAATCTCCAATTGCAGACGCAATTCCCTTGCAAAGTTCTCTGCACAAAAACACTTTGTACATTTTATGCATAAATTCAATACATCTAAGTTTTTCTACATGATTCTAAGACTTTTGCTAAATTGACTCAAAAAGATAAGATTTTAAGCACAAACTCTTTGCTTTCTAACCTAGGCTTTTAAGGTTAAATAACGCACATAAATGAGCGTTATCAGTAATTCGAGCATTGGAGACATTAGGAGCGAATCACACAATTTGGTACTAAATCAGGCATTTTGGAGCATTTTCGAGCCAACTCAGAGTTTACAGATGAAGAGAAGGTGAGAAGACCCGACCGGACCATGGCAAGCCCGAAGTTTAGTGCCAATGAGTCAAAGGTTCAAGCCCCAAGCCAAGCAAACCGAAAGGAAAGAAGAAAAATAAAGCAGTATGCTGGGATGTAGGACATCATCAAGACGCTACCCCCAGCGCCTTGACACTAGTGCTAAAACACGCGGAGGACATAATTAGTAGCAACGAGACGCTGCTTTCCTAACGTCTAACACTATGACGATAATATAAAATCTAGGTTTCGTCTTTTAGCACCGTAGGTTAGAATTTTCCGATTAGGTTTGTTCTTTTCTTGTTTTCTTATTGTTCTTTCTGTATTTCTTTGATTCTTAGGACCTGAGAATGTTTTTCCTTTATGTATTTTTTGCAATCTCTTCAATTATGCTAGTGTAAACTCATTTTCATTGGATTCTTGGGATGTAGTTGGATTGAATTGATGCAAATTTTTGTTGAGCTTACTGGTGTAATTTAAATTTTGCTTAATCTTTGTGTTCATCAATGTTTTTCTTGTTTAAATCATTATCTTTGAATGCTTTCTTAGGCAATCTATTAGTTATTTGAGATAGCCAATAGGTTCAAATCATTCCTTTGCATTTTTCTATACGAACTTGCATAGCTCGCTTGATAGAACCTAGGATGCATTGAGAAATTGCTAGATTAATTTATAAACGCACTTTCTTGATTTAAATTAGCAATTCCAGACCCTTAATCGTAATGCAACTAATTTGGTAAATAATTACGCGGGCTAACAAATTATTTATTCGGTTAGTTAGATTAGATTCGTGGGCTAGCGGTCTAAAGCATGAGGGGTAGCGGGCTGACGGGGTGGAGTTGTCGAGGCTCCTGCTGGTCAAATAAATTTATAATCCACGACACTACAACTATTTTGTAGAAATAGTGGTCGGGGTCGAACACAGGGAAGGTGACCTAGAAGTTATAGAATTTCGTGCTTATGAAAAGAGGAGGGATTTTTGGAATGAAGAACAAGCAAAAATAATCAAATGTTAAATTTAAATGGCACAAAATAAGCATGCAGAAGAGAAATTAGACGGGAATCAATAACATGAAAGGGATCGTTGGATTGAGATTTATTATGCTTGATTCTAATTCGTTGGCTTCCTAGTTTTCTCGAATAATTGTTCTAAGCTGATTTCATTAGTCTGGTCGGCTTTTGGGTTACTCGGAGGACCCCCCTACACTAACCTGTGCTAATTAACTTGCTAACCTTGAATTCTGCAATTAACAAGATTAATTAATATTAACTTTATCGCTCTCCACCCCTTATACATAATTTAGCAACCATCCGAGACCTCTGCAACGATTACTGATTATATCTAACTAGTTTATAACAAGCAGTTTTGCAACTACCTATTTAATCTAGCCGCTTTGGGATCGTGGGTCCGGAATTGTATGAACCAAATTCAAATGCAATTTAAATCTAATTCCTACAACCTTTAACATGCATCGTAGGCCTATCAAGGGTCGTCTCGCGTAGAGAGTGACTTGCCTTAGCCTAGTGTCTATCTAAAAATAACTGATAGAATACACAAGTGGTAATCACATAGGGTGTCAATCCTAATAGACTAGCCTCATGTATTGTTTTAAATGGGATAACATGCAATACTGAACGAAAAAGACAGCAAGAACAGCAAGATGAACCAGAAAACTCAGCCAATCTTATTAGAGATCAAAGCATAAATCCAATCCAACGATTTAAATACGATTAACTATGCATAGATGAAGTAAAAGCAACAATAGACATGAAAGAATCCATAAAATATGACCAAGAATGGTCTACAACAGTGCTGGAATGCAAAAGGGACAAAGGAAATCGTAAAAAGACCAAAGTTCTAACCTAACGGCGGACTTGAAGGGATAAAAGCCCCACGCAGCGGAAAGTATTACCGAACCTACTCAGAGTCTTAGATTCTAATTGAAATACCAATACAATTTGCAAAATATTACTGCAATAAATCTATATTTAATGGGCTGTACATAGGCTATAAACATGATAAAAGATCAACTAGATTGATCTTAGTGATCAAGGATTTCATAGAAAACTTACTTTTGTAGAAAGCCTTGGTCAATTTGCCTTTTCTTGCCAATAAGATTGAAAACGCAGCAACCCTCTTGTGCGAACACCACCAATCGGCTACACCAGTATATCTCTAAGACTTCTTGAAGCAGGAGACTTGTGGGAGTCTTTTGGGAGAGATCTCTGAGAGAAGGAGAGACCATGGGATGCCTTTCACCCCACCCCAAGCCTATATATAGGTAAAGGCCAAGACCTTTTCCTAATAGGAAAAGATCTAGGAATAAGTTCAAATTTATTATCTGAACAATATCTAATTTTAATAATTAATTAATTACCAATTAAATATCACATATTTAATCTTAGGGATTTTATTAAAATTAAAATTAATATGAATCCAATTCATATTAAATTTATTTGAACTCTTTCAAATATTTTCTTTCCTAATAGGAAAAGGTCTCTAATTTTAATAAATAATTAATTAATTCCATGATTAATTAATTACCCAATTAAATATCATATATTTAATCTTAGGGATTTTATTAAAATTAATATGAATCCAATTCATATTAAATTTATTTGAACTCTTTCAAATATTTTCTCTCAAGAATTAATTTTTGAAATTAATTCAAAAATTATATTATAAAGTTTCATAAACTTTATATTATAATGCATCAATATACATTATACGATTCCCCAAATAAATTGAACACTTTCAATTTACAATTTATATTTGTTTGCTTCAAGTCTTTTTACGAGCTACCAGTGGAACCTAATGGACCTGCAGATCAGAAGCTCCAACGATACGAGACTAATCGGCTTAAACTCATTAACCAAGTTAGTCTCCATTCGTTAACTGTGGGTCATTCCACTAAAGACCCTCAGCTGCACTCTTCTCACTGCAGAATATTTATGTGTCCACGGATATCGACCAATACTACAAGTCAGTCCTTCACTTGTGTTCGTATCCCAGCTGGGTCAAATTACCGTTTTACCCCTGGTTTACATCTTTGTCCTTAAGTCCCCAGTGCTCCTCTAATGAACAGCCTGTTTGAGGTCCAACCAACAAACAGAAGTCAGACTCGTGCCATAGAAAGGGTTTGGCCCATTGTTCAAGTCCCGGAGACACCACTTAAGGGAACACACCTCTACTTACCCTAGAGTCGGGAAGGAGTGAATTCCATCTTGTGTGATTATGTTCCCAACTCCCCACTTAGTATTGTCCCCAAAATGGTAGGCTTATTGAGTCGGCGTGCTGGCCATTCTCACCCATACAAATCAAAGGACAACTCTTCGTGAACAGGAGTCCATAATCCACTCAGGATTGAGACTGAGTTGTCTAGGTCATCCTAGTGAAATAGAAACCAAGCCAACTAACGGTGTTACAGTTAGTGGTTAACTATTTCGCGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCAACTACATGAACGCGTTGGATCATAGCGATTGTATCATAATACAAAGTGGGCCGTATCCATAGTGTCACCAGGATAAGGTACCCAGCCTTATCCCTATACTATAGACCTTTTAGGTTGTTACTTGAACATCGATCCCCGTATGTCCCCACATACTAGTTCAAGTTACATAAACAACCTTGGATCTTAGTTTATTGGATTTGGGTCAAATAGTGCAATATTTAACAATAACATTTTATTGCAGAAACTAAATAACACTTTATTAAATACAAGTATAAAATTTGTTTACATTCATTATCTACGAGTTTTAGGGCATAAAACCCAACAGGACTAAACCGACGCTACGTATTTATAGAAAATACGGCAACGTCGAGACTCCAAGGGCAGCGTCTCGACGCTGTGAACTTTATATTTCGGGCGGATTTCGCGTCGGCGTCGAGACGCCAAGGGCAGCATCTCGACGCCAGCCTTGATTCTCGACTTGCTGCTTTAATTCTCGGTCTTGTCTCAATTCTTCTCGGTACGGTGCTACAATCTTCGGCTTTTGGTGTCATTCTTCAGGCCCGCTTCAACACAATTGGGTCTTTTCACCTCCTTGTCGTCCAAGACACCGAGATGGCTCCAAAACTCCGTAATTGTCCCGAATTAACACTAATTAGCGAGATCGGCTTCCAATATAGCCTAAGCTCAATTATCCTGTAAATAAGACAAGTAAAACATAAGATGACTCTAACAAGCTTAGATTAGAGGTGATAAAATAGGACTATTTAGGTCCTATCACGGAAATAAATTAATAACAGTTAATTAATTAATCATGCGGGCTAACGGGTTAATTAGTTGATTAACACAGGTAAGGAGGATGCAGAATCCGAATTACCAAGAAGCACACCGGGTTCATAG

mRNA sequence

ATGGACTCCTATCTGCAAGGGATTGTCCTTTCATTTGTATGGGTGAGAGTGACCAGATCGCCGACTCAATATGCTTACCATTTTGGGGACAAGATCGAGGTGGGAGTTGGAAACATAACAACACAAGATGGAATTTGGTCCTTCCGCATTTTGGTTTATTTGTCTACTTTATCGGTAATTGACATGCGGCGTGGGAGCGCACACCCTGCCCGAGTGCAAGTAGGGCTTTCTTCTACTCAAGATCCCACGAATCTCGATATTCTGTCAGAAAGCCCAGTTTCGGCCGCAAAGTCAGGCATAAATCTTTGTGCAGTGCCTTGTAACTTCTGTCTTCAGCTGGGACTACTTTCCTTATTGGTTTGCGAGTGCATTTCAAACACATCTTCCACATCTTCAGGACCAGAGTGGGAGCGAATCACACAATTTGGTACTAAATCAGGCATTTTGGAGCATTTTCGAGCCAACTCAGAGTTTACAGATGAAGAGAAGGTGAGAAGACCCGACCGGACCATGGCAAGCCCGAAGTTTAGTGCCAATGAGTCAAAGTCTTTTTACGAGCTACCAGTGGAACCTAATGGACCTGCAGATCAGAAGCTCCAACGATACGAGACTAATCGGCTTAAACTCATTAACCAAGTTAGTCTCCATTCGTTAACTGTGGGTCATTCCACTAAAGACCCTCAGCTGCACTCTTCTCACTGCAGAATATTTATGTGTCCACGGATATCGACCAATACTACAAGTCAGTCCTTCACTTGTGTTCAAAATACGGCAACGTCGAGACTCCAAGGGCAGCGTCTCGACGCTGTGAACTTTATATTTCGGGCGGATTTCGCGTCGGCGTCGAGACGCCAAGGGCAGCATCTCGACGCCAGCCTTGATTCTCGACTTGCTGCTTTAATTCTCGGTCTTGTCTCAATTCTTCTCGGTACGGTGCTACAATCTTCGGCTTTTGGTGTCATTCTTCAGGCCCGCTTCAACACAATTGGGTCTTTTCACCTCCTTGTCGTCCAAGACACCGAGATGGCTCCAAAACTCCGTAAGGAGGATGCAGAATCCGAATTACCAAGAAGCACACCGGGTTCATAG

Coding sequence (CDS)

ATGGACTCCTATCTGCAAGGGATTGTCCTTTCATTTGTATGGGTGAGAGTGACCAGATCGCCGACTCAATATGCTTACCATTTTGGGGACAAGATCGAGGTGGGAGTTGGAAACATAACAACACAAGATGGAATTTGGTCCTTCCGCATTTTGGTTTATTTGTCTACTTTATCGGTAATTGACATGCGGCGTGGGAGCGCACACCCTGCCCGAGTGCAAGTAGGGCTTTCTTCTACTCAAGATCCCACGAATCTCGATATTCTGTCAGAAAGCCCAGTTTCGGCCGCAAAGTCAGGCATAAATCTTTGTGCAGTGCCTTGTAACTTCTGTCTTCAGCTGGGACTACTTTCCTTATTGGTTTGCGAGTGCATTTCAAACACATCTTCCACATCTTCAGGACCAGAGTGGGAGCGAATCACACAATTTGGTACTAAATCAGGCATTTTGGAGCATTTTCGAGCCAACTCAGAGTTTACAGATGAAGAGAAGGTGAGAAGACCCGACCGGACCATGGCAAGCCCGAAGTTTAGTGCCAATGAGTCAAAGTCTTTTTACGAGCTACCAGTGGAACCTAATGGACCTGCAGATCAGAAGCTCCAACGATACGAGACTAATCGGCTTAAACTCATTAACCAAGTTAGTCTCCATTCGTTAACTGTGGGTCATTCCACTAAAGACCCTCAGCTGCACTCTTCTCACTGCAGAATATTTATGTGTCCACGGATATCGACCAATACTACAAGTCAGTCCTTCACTTGTGTTCAAAATACGGCAACGTCGAGACTCCAAGGGCAGCGTCTCGACGCTGTGAACTTTATATTTCGGGCGGATTTCGCGTCGGCGTCGAGACGCCAAGGGCAGCATCTCGACGCCAGCCTTGATTCTCGACTTGCTGCTTTAATTCTCGGTCTTGTCTCAATTCTTCTCGGTACGGTGCTACAATCTTCGGCTTTTGGTGTCATTCTTCAGGCCCGCTTCAACACAATTGGGTCTTTTCACCTCCTTGTCGTCCAAGACACCGAGATGGCTCCAAAACTCCGTAAGGAGGATGCAGAATCCGAATTACCAAGAAGCACACCGGGTTCATAG

Protein sequence

MDSYLQGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRILVYLSTLSVIDMRRGSAHPARVQVGLSSTQDPTNLDILSESPVSAAKSGINLCAVPCNFCLQLGLLSLLVCECISNTSSTSSGPEWERITQFGTKSGILEHFRANSEFTDEEKVRRPDRTMASPKFSANESKSFYELPVEPNGPADQKLQRYETNRLKLINQVSLHSLTVGHSTKDPQLHSSHCRIFMCPRISTNTTSQSFTCVQNTATSRLQGQRLDAVNFIFRADFASASRRQGQHLDASLDSRLAALILGLVSILLGTVLQSSAFGVILQARFNTIGSFHLLVVQDTEMAPKLRKEDAESELPRSTPGS
Homology
[Close]
BLAST of Spg037056 vs. NCBI nr
Match: TYK01421.1 (uncharacterized protein E5676_scaffold772G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-06
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 6  QGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRIL 52
          Q IVL FVWV VTR  TQYAYHF DK E G  NITT+DGI+SF  L
Sbjct: 39 QEIVLWFVWVNVTRLLTQYAYHFKDKTERGAENITTEDGIYSFPTL 84

[Close]
BLAST of Spg037056 vs. NCBI nr
Match: KAA0065950.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 2.7e-05
Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 15  VRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRIL 52
           VRV R PTQYAYHFGDK E G GNI TQDGI SF +L
Sbjct: 97  VRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLL 133

[Close]
BLAST of Spg037056 vs. NCBI nr
Match: KAA0043328.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-05
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 2   DSYLQGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSF 49
           + +L+ + L  +++RV + PTQYAYHF DK E G GNI TQDGI SF
Sbjct: 156 EGHLESLGLRDMYIRVAKLPTQYAYHFEDKTEWGAGNIITQDGIHSF 202

[Close]
BLAST of Spg037056 vs. NCBI nr
Match: TYK27885.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-05
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 2   DSYLQGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRILVYLSTLSV 60
           + +L+ + L  +++RV + PTQYAYHF DK E G GNI TQDGI  F  L Y+   S+
Sbjct: 71  EGHLESLGLRDMYIRVAKFPTQYAYHFEDKTEWGAGNIITQDGIHFFPPLGYVDKCSL 128

[Close]
BLAST of Spg037056 vs. NCBI nr
Match: TYK26313.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 7.9e-05
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 0 

Query: 15  VRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSF 49
           VRV R PT+YAYHFGDK E GVGNI TQDGI SF
Sbjct: 197 VRVARLPTRYAYHFGDKTEWGVGNIITQDGIHSF 230

[Close]
BLAST of Spg037056 vs. ExPASy TrEMBL
Match: A0A5D3BNQ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00040 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.0e-07
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 6  QGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRIL 52
          Q IVL FVWV VTR  TQYAYHF DK E G  NITT+DGI+SF  L
Sbjct: 39 QEIVLWFVWVNVTRLLTQYAYHFKDKTERGAENITTEDGIYSFPTL 84

[Close]
BLAST of Spg037056 vs. ExPASy TrEMBL
Match: A0A5A7VFG5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00390 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-05
Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 15  VRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRIL 52
           VRV R PTQYAYHFGDK E G GNI TQDGI SF +L
Sbjct: 97  VRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLL 133

[Close]
BLAST of Spg037056 vs. ExPASy TrEMBL
Match: A0A5A7TKJ4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002390 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-05
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 2   DSYLQGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSF 49
           + +L+ + L  +++RV + PTQYAYHF DK E G GNI TQDGI SF
Sbjct: 156 EGHLESLGLRDMYIRVAKLPTQYAYHFEDKTEWGAGNIITQDGIHSF 202

[Close]
BLAST of Spg037056 vs. ExPASy TrEMBL
Match: A0A5D3DX33 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00690 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-05
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 2   DSYLQGIVLSFVWVRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSFRILVYLSTLSV 60
           + +L+ + L  +++RV + PTQYAYHF DK E G GNI TQDGI  F  L Y+   S+
Sbjct: 71  EGHLESLGLRDMYIRVAKFPTQYAYHFEDKTEWGAGNIITQDGIHFFPPLGYVDKCSL 128

[Close]
BLAST of Spg037056 vs. ExPASy TrEMBL
Match: A0A5A7VKV9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001280 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-05
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 0 

Query: 15  VRVTRSPTQYAYHFGDKIEVGVGNITTQDGIWSF 49
           VRV R PT+YAYHFGDK E GVGNI TQDGI SF
Sbjct: 174 VRVARLPTRYAYHFGDKTEWGVGNIITQDGIHSF 207

The following BLAST results are available for this feature:
BLAST of Spg037056 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK01421.11.4e-0669.57uncharacterized protein E5676_scaffold772G00040 [Cucumis melo var. makuwa][more]
KAA0065950.12.7e-0575.68ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-cop... [more]
KAA0043328.16.0e-0555.32gag/pol protein [Cucumis melo var. makuwa][more]
TYK27885.16.0e-0548.28retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m... [more]
TYK26313.17.9e-0579.41gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Spg037056 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg037056 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BNQ97.0e-0769.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VFG51.3e-0575.68Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TKJ42.9e-0555.32Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G0023... [more]
A0A5D3DX332.9e-0548.28Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var.... [more]
A0A5A7VKV93.8e-0579.41Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G00128... [more]
BLAST of Spg037056 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037056.1Spg037056.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding