Spg036979 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg036979
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold5: 25848152 .. 25850103 (+)
RNA-Seq ExpressionSpg036979
SyntenySpg036979
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCAGTGAGAAGAGTGCAACTGTGAGTCTGTAGTGGAGTGAACACACAGTTAACGAATATTGATTAATGTGGTCAATGAGTTTGACCAATTAATCTCACATCGTTGGAGCTTCTGATCTGCAGGTCCATTAGGTCCCACTGGTAGCTCATAAAGTAATTTGAGGCAACTAAGTAATAAATGTAAATTGAAAATGTTCAATTTACTAAGGGAAACAAATATAATATATATTGATATATTATTATGAGAGAAATTAATATTTGAAGAAGTTCAAATATAAATTTTATGGAAGTTTGAAAGAGTTCAAATAATGAATTAATTTAAGGCCTAAAATGTGTTTGGGCAAATTAATTAATTCTAGGCCGGAAATTAAATATGTGATATTTAATTGGTGGTTAATTAATTAAAGAATTCATTAACCGGGAATTAATCAATTATGGAAATAATTAATCACTTAAGGAAGTGATTAATCATTTATTGATCTAATCACTTATGGAAGTAATTAGTCATTTGTGGAAAAGATTAATCAATTATGGAATTGATTGATCATGATTGATTAATTAAGGAATAAGATTGAATCAATTTTGGAAAAGATTGATTTAATTGAATATTTTATTCATGGCCTCTCTTCTATAAATAGAACACTAGACCTAATTGGTCATAAAACTTGAAATTTTGCTCTTGCTCTTAGACTCTCAAAGACAAGACCTAAAATTCTCTCTAGCCTCCCTCTTAGAGAAAGACTCCCACAAGTCTTTTGCCTCCTAGACCTAGAGTCATACCGGTGTAACCTTTGTGGTTATTGTGTCAATCAAGAAGAAAATTCCAGCGATCAAGTGGCGAAGAGGCTGCTGCGTTTTCGTTCGTTGGAGCGTTGTTGGCGAAGAACGGTTAAGTCTACAACGAAGGTATGTGACGGTTCTTCCCCTTTTCTTTAGAAAAGCATGAAAATAAATTTAGATTTATTTTTAAGCATGTTTAAACTGAATTTCCAGCAACTTTAAAGAGTGTTTAAAGTTTGTTTGAGTTATCGTAACGGTATTTTAATGTTAATTAATATACGGCGCAAGGTCCAATCGATGCGCTTCCACTGCGTGGGGACTTTTATTCCCTTCAGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGGCGGGCTCCACTACGACAAAGGTGATGGGAGTGTTGGGCGGGCCCCACTACATAATAGAGCTAGTAAACGTTGGTTGTACTAGGCGTGCCCTACACAACGTTGATTTGTCATGTTAGTTAAGATGTTTTATATAATTGATATGCCTTCCTGAATTTTAATAACGTACTTACGAGTTATTTGAGAAAGCTTTTATCGTTACACGTTTATGTTAAACGCTTAATTGAACAGATTTATACGTCTGGAGGTTTATCATGTGTTCCGATTTGCAAATCTACAGTTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCCATTTTTCAGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACATCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTTTGTATAAATTGTAAATGTTTTGTAAGGATTGGATAATTTACGGTTTGCGTAAGTTCTAGATGTCGTGGTTGTATAAACCCCAGTTGAATATGTTTTGGGTTATGATATCTATATCGGGTTATTTTCTAAATCAAGTTATGTTAGGGCTGCACCTCGTGTATGTTAAAAGGTTTTCAGGGATTCCGCTGTGTTGCGTTTCATGTAGAATATTTTATATCTAAGATTAATACGTTTATCAGGTTCAAAGTTTCAGGAGGGTCAATGGATATCGTTAGAGGAGGACGATATTTGTTGGCTTCATGTCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTGTGA

mRNA sequence

ATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGCGATCAAGTGGCGAAGAGGCTGCTGCGTTTTCGTTCGTTGGAGCGTTGTTGGCGAAGAACGGTTAAGTCTACAACGAAGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGGCGGGCTCCACTACGACAAAGATTTATACGTCTGGAGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACATCTGCTGAAAGTTCTAGATCAAGCTCCAGTTCAAAGTTTCAGGAGGGTCAATGGATATCGTTAGAGGAGGACGATATTTGTTGGCTTCATGTCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTGTGA

Coding sequence (CDS)

ATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGCGATCAAGTGGCGAAGAGGCTGCTGCGTTTTCGTTCGTTGGAGCGTTGTTGGCGAAGAACGGTTAAGTCTACAACGAAGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGGCGGGCTCCACTACGACAAAGATTTATACGTCTGGAGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACATCTGCTGAAAGTTCTAGATCAAGCTCCAGTTCAAAGTTTCAGGAGGGTCAATGGATATCGTTAGAGGAGGACGATATTTGTTGGCTTCATGTCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTGTGA

Protein sequence

MSAVRRVQLSIRSHCDQVAKRLLRFRSLERCWRRTVKSTTKSVLRDNDVVVSAGRAPLRQRFIRLEVEIELPMPDTLPTSAESSRSSSSSKFQEGQWISLEEDDICWLHVIFRTKLAGGPGGGVTV
Homology
[Close]
BLAST of Spg036979 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 5.9e-16
Identity = 60/128 (46.88%), Postives = 68/128 (53.12%), Query Frame = 0 

Query: 39  TTKSVLRDNDVVVSAGRAPLRQR---------------FIRLEVEIELPMPDTLPTSAES 98
           +T SVL DND VVSAG+APLRQR               F    VEIELP+PD LPTSAES
Sbjct: 104 STLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTSFFKMFSTFLVEIELPVPDILPTSAES 163

Query: 99  SRSSSSSKFQ--------------------------EGQWISLEEDDICWLHVIFRTKLA 126
           SRS+SS+  +                             WI +  DD+CWLH IFR K A
Sbjct: 164 SRSNSSTWLELYFESVHVEMFYKVILQTKRCQGCILWSAWI-VRGDDVCWLHAIFRAKTA 223

[Close]
BLAST of Spg036979 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 5.9e-16
Identity = 60/128 (46.88%), Postives = 68/128 (53.12%), Query Frame = 0 

Query: 39  TTKSVLRDNDVVVSAGRAPLRQR---------------FIRLEVEIELPMPDTLPTSAES 98
           +T SVL DND VVSAG+APLRQR               F    VEIELP+PD LPTSAES
Sbjct: 104 STLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTSFFKMFSTFLVEIELPVPDILPTSAES 163

Query: 99  SRSSSSSKFQ--------------------------EGQWISLEEDDICWLHVIFRTKLA 126
           SRS+SS+  +                             WI +  DD+CWLH IFR K A
Sbjct: 164 SRSNSSTWLELYFESVHVEMFYKVILQTKRCQGCILWSAWI-VRGDDVCWLHAIFRAKTA 223

[Close]
BLAST of Spg036979 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.7e-13
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 39  TTKSVLRDNDVVVSAGRAPLRQRFIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ----- 98
           +T SVLRDND V                VEIELP+PDTLPTSAESS S+SS+  +     
Sbjct: 22  STLSVLRDNDAV----------------VEIELPVPDTLPTSAESSESNSSTWLELYVEF 81

Query: 99  ---EGQWIS--LEEDDICWLHVIFRTKLAGGPGGGV 125
              E  W++  + EDD+CWLH +FR K AGGPGGGV
Sbjct: 82  VHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg036979 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.7e-13
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 39  TTKSVLRDNDVVVSAGRAPLRQRFIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ----- 98
           +T SVLRDND V                VEIELP+PDTLPTSAESS S+SS+  +     
Sbjct: 22  STLSVLRDNDAV----------------VEIELPVPDTLPTSAESSESNSSTWLELYVEF 81

Query: 99  ---EGQWIS--LEEDDICWLHVIFRTKLAGGPGGGV 125
              E  W++  + EDD+CWLH +FR K AGGPGGGV
Sbjct: 82  VHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg036979 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 3.0e-12
Identity = 54/123 (43.90%), Postives = 63/123 (51.22%), Query Frame = 0 

Query: 39  TTKSVLRDNDVVVSAG------------RAPLRQR------------------------F 98
           +T SVLRDND VVSAG            RAPL +R                         
Sbjct: 541 STLSVLRDNDAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDV 600

Query: 99  IRLEVEIELPMPDTLPTSAESSRSSSSSKFQEGQWISLEEDDICWLHVIFRTKLAGGPGG 126
           + + VEIEL +PDTLPTSAESS S+S S         +  DD+CWLHV+FR K  GGPGG
Sbjct: 601 LVMPVEIELSVPDTLPTSAESSESNSRSAG------IVRGDDVCWLHVVFRAKTTGGPGG 657

[Close]
BLAST of Spg036979 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.9e-16
Identity = 60/128 (46.88%), Postives = 68/128 (53.12%), Query Frame = 0 

Query: 39  TTKSVLRDNDVVVSAGRAPLRQR---------------FIRLEVEIELPMPDTLPTSAES 98
           +T SVL DND VVSAG+APLRQR               F    VEIELP+PD LPTSAES
Sbjct: 104 STLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTSFFKMFSTFLVEIELPVPDILPTSAES 163

Query: 99  SRSSSSSKFQ--------------------------EGQWISLEEDDICWLHVIFRTKLA 126
           SRS+SS+  +                             WI +  DD+CWLH IFR K A
Sbjct: 164 SRSNSSTWLELYFESVHVEMFYKVILQTKRCQGCILWSAWI-VRGDDVCWLHAIFRAKTA 223

[Close]
BLAST of Spg036979 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.9e-16
Identity = 60/128 (46.88%), Postives = 68/128 (53.12%), Query Frame = 0 

Query: 39  TTKSVLRDNDVVVSAGRAPLRQR---------------FIRLEVEIELPMPDTLPTSAES 98
           +T SVL DND VVSAG+APLRQR               F    VEIELP+PD LPTSAES
Sbjct: 104 STLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTSFFKMFSTFLVEIELPVPDILPTSAES 163

Query: 99  SRSSSSSKFQ--------------------------EGQWISLEEDDICWLHVIFRTKLA 126
           SRS+SS+  +                             WI +  DD+CWLH IFR K A
Sbjct: 164 SRSNSSTWLELYFESVHVEMFYKVILQTKRCQGCILWSAWI-VRGDDVCWLHAIFRAKTA 223

[Close]
BLAST of Spg036979 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 39  TTKSVLRDNDVVVSAGRAPLRQRFIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ----- 98
           +T SVLRDND V                VEIELP+PDTLPTSAESS S+SS+  +     
Sbjct: 22  STLSVLRDNDAV----------------VEIELPVPDTLPTSAESSESNSSTWLELYVEF 81

Query: 99  ---EGQWIS--LEEDDICWLHVIFRTKLAGGPGGGV 125
              E  W++  + EDD+CWLH +FR K AGGPGGGV
Sbjct: 82  VHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg036979 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 39  TTKSVLRDNDVVVSAGRAPLRQRFIRLEVEIELPMPDTLPTSAESSRSSSSSKFQ----- 98
           +T SVLRDND V                VEIELP+PDTLPTSAESS S+SS+  +     
Sbjct: 22  STLSVLRDNDAV----------------VEIELPVPDTLPTSAESSESNSSTWLELYVEF 81

Query: 99  ---EGQWIS--LEEDDICWLHVIFRTKLAGGPGGGV 125
              E  W++  + EDD+CWLH +FR K AGGPGGGV
Sbjct: 82  VHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg036979 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 54/123 (43.90%), Postives = 63/123 (51.22%), Query Frame = 0 

Query: 39  TTKSVLRDNDVVVSAG------------RAPLRQR------------------------F 98
           +T SVLRDND VVSAG            RAPL +R                         
Sbjct: 541 STLSVLRDNDAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDV 600

Query: 99  IRLEVEIELPMPDTLPTSAESSRSSSSSKFQEGQWISLEEDDICWLHVIFRTKLAGGPGG 126
           + + VEIEL +PDTLPTSAESS S+S S         +  DD+CWLHV+FR K  GGPGG
Sbjct: 601 LVMPVEIELSVPDTLPTSAESSESNSRSAG------IVRGDDVCWLHVVFRAKTTGGPGG 657

The following BLAST results are available for this feature:
BLAST of Spg036979 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037581.15.9e-1646.88reverse transcriptase [Cucumis melo var. makuwa][more]
TYK03091.15.9e-1646.88reverse transcriptase [Cucumis melo var. makuwa][more]
TYK27998.12.7e-1351.04reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066851.12.7e-1351.04reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0065516.13.0e-1243.90uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa][more]
BLAST of Spg036979 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg036979 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BTP32.9e-1646.88Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5A7T7M62.9e-1646.88Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5D3DX391.3e-1351.04Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7VMG91.3e-1351.04Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7VGQ51.5e-1243.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Spg036979 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg036979.1Spg036979.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0003824 catalytic activity