Spg036941 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg036941
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationscaffold5: 47652262 .. 47657478 (+)
RNA-Seq ExpressionSpg036941
SyntenySpg036941
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCATTTTTGGAGGTTCCCCGAACGATTGGTTGTTTCAGGCGGCACAATATTTCACTACTCAAAGGCTGTCCAATGAAGAAAAAGTGCAGGCAGCGACTATTTCCTTCACTGAGGCAGCGTTGCAGTGGCTTCAATGGGCAGAAGGCAAGGAATCGTTACAGGGATGGAAGGATCTCATGAATCGGATATTCGAAAGATTCAAACCTATGCAAGAAGGCTCCGTATGTGCGAGATTCCTAGTTGCGCGACAAGACAACACTGTACCAGAGTTCAGAGAATGTTTTGAAGAATTATCAGCACCCCTGCCACACCTAACAGACGAGATTATAGAGAGCTTGTTTTTTAATGGACTGGACCCAGAGGTAAAGGTTGAGGTGTTATCTTTTAAGCCAGTGGGCCAGCAGCCCTCATAAAGGCGGCCCAACGCGTAAAGGATAAGAACTTGGCCCGCAACCTGAAAGCAAACCCAAACGAGGGAAAATCTACGAATTCAACCAACCCCAATTATGACCAAAATCGAATCCCAAGGTAATTTAATTGATGCCACTCCCATCAGGTCCATCACCCTGCCAAGTAGCCCGACACCTCAACGTAGGGAAACACCCTACAAGTTAACTGACACGGAACTCCAGTCGATTAAGGAGATGGGCCTCTGTATAGATGCGATAAAAAAAATTATGAGACCATTGAAGATTATAGGTATAGCAAAAACGACGAAGGTCATATTCAAGATTGATTTTGGAAAAGTTTATGACCATGTGGATTGGGATTATCTTGACATGGTTCTCGCGAATAAAATGGTTATGGATATTTATTAATACGAAACAGTTGTGACCTCCATAGGCTGGATGTCACTTCCACCAAACAGTGCTGCAAAAGGGAGACCTTGGGTGGACTCAGCTACCAAAGGATGGTTCTCTATACACATATCAAATCAAACTCAGTCGACTAATAGACAAATTTAGTGCTAGTTAGTTTTCCTAAATTTTGATTATCTTCTTGTTAATCTAGAGGAAAATTTTTTGTTTCAGGCCATTCTGGAGTGTTCAAGATGAAATTGGGGAAATTTCGATCATTTCCCAACAATCAAATGTCAACACTAGGCAAAATCTACCCAAAAGTCAACTTGTGGCCAACTCAAGAGTCAAGCCAAAATCCCGAGGGCAACGCTATGCTCAACACCGCAAGGCATTGTGCATCCAAAGGGGACAGCGTCAAGTCGTTGCCCTTAGCATCTCGATGCTCTAGGACCGCTGGCGCTGAAATTCCAACATCTCAACGTTGGCCCAGCGACTCAACGAGGTCTACTACGCGCTCACTTCCATATGCCTTTCGTCCGGAGCGTCTTCACGTTCTCGACCGCACAATAAATGCAAACTTTTCGAATTGAGTTTGTTGACAACACTTTATTCTTTTGTTCAGGTTAGGAGAGTTCCTTTGTTAATCTTAAAAGATCCCTGTCCTTTTGAAGTCATTTCTGGTCTTAAGATTAATGGAGGAAAAAGTTGTTGCCCGTCCAAGTTGGCGTCATGGGGACGTTGGTGAGTTGTGAGGTTAATCAGTTCACTTCCACTTATTTGGGGCTCCCCTTGGGTTTTGGTGGGTTGTGAGGTTAATCAATTCTCTTCCACTTATTTGGGGCTACACATGAGTGGAAACCTAATCGACTGTTTTGAAACCCTGTTGCGGAGAAGTTTCAGAAACGTTTGTCAACATAGAAGAAGGTTACTTTCTTCAAAGAGGGAGATTCACTCTTATTCAAGCACTCTTGGGTGGAATTCCTAGCTTTTTCTAGTCCATATTTAGAATCCTGATTTGTATGAGTAAAATGCTCAAGAGATTGATGAGAAATATTTAGTGGGAGGGGGTTGAGGAGGGGGAAAGATCCTATTCGGTGAAGTGGGAGACAGTGTTAAAGCCTATCAAGCTCGAAAGATTCGGTATTGGAAGCTTGACATTACATAGCAAGGCTCTATTAGCTAGGTGGTTGTGACATTTCTTTACAAAAGCTGGCACTTTGTGGTACAACGTGATTGTGAGTAGATACAACCCTCACCCTTTTGAGTGGGTCTCGAGTGGAGTGTCCAAGAGCATCAATACAGATTTCTGGAAAGCTATTTCTTCTTGTTTTAACTCTTTTTCCCAATTTGTCAGGTGTTATGTTGGGGAAGGTTCAAGAGTTTATTTTTGGGAGCATCAAAGGGTTGGGGATTGACCTTCGTGCATTTTGTTTCCTCGTCTTTACTTCCTTTTAGAGAAGAAGATGCATTCGTTAGCCTCTGGATCCATCTCTTTGGGTTTTCGTCGATCTTTACCAATAGGGAAATGATGATAGTTGTGGCGAGAATATTCTTTAGCTGACCTTGAAGCTTCTGTTTTTGCCTCTCTCTAAAAGGTTAAAATCTTTAGGAAAGTGAGGTTTTTTGCGTGGCAAGAATTACTTGGGAAGGTTAACACTTTGGATCGTCTTCAAATACACTCTTCCTTTGTTTTGCTCCCACAATGATGTGTTCTCTGAAGGAGGAATGAAGAGGACTTGGAGCATTTATGGTAGGAATGCAAGTTTGCTTATTTCCTTTGGGGCTATTAGAGATCTTCATTTGTGGTTAGCAGGATGCATCATAGGGATGGGATATCTTTGATGGAGGAAGTGCTCTTGCATTAAGGAGAAAGGCAAAGTGTTGTGGCAAACCAGTTTTTTTTTTGTTGTTTTGTGGGGTATTTGGCTCGAGATGAACCGTGGGCGTCGGTCACTAGGTTGTTTTGTAATTATGGTCTTGGACTTGTTCTTTTGGACTCTCATTGCTCTTGGGCTTGTTTTTTTGTATGTCCTTGTATTCTTTAACCTGTTCAAACAAAACTTGGTTTCTTACCCAAAAAAAAATTACCCTAAAGAAAGAATCCATCGTTTTTGTGTATAAGATTCTTGCAAAGTACTTGCTCAAAGATTGAAACAAGTTATGCTCTCCATCATTTCTTATTATCAAAGTGCATTTCAACAAGCCAATCAAATTCTCGATCCTATTTCAATTGTAAATGAGGTTGTGGAAGAATATAGATTTAGAAAGAAGAAAGGTTGAATTTTAAAGCTTGATACTGAGAAAGATTTTGACATTATGTTGATTGGGATTTCTAGGAGGTACTGATGCTCAAAAATTTTAATAGCAAATAGATTCAGTGGGTGGGTTTCTGATTGTCTAAGGGACCCATAATTCTCTATTTTTATGAATGGAAGACCTTAACGACATATATTAGTGTTTCACAACATTCAACAATATGTATGCCACGGGCTTTTTAAGGTTTTTTGTGGGGAAAGAAAAGATTCATGTGTCTATTCTTCAATTTGCCGATGATACCTTGGTGTTTTGTGAATATGATAACAATATACTTCAAATCTTAATTCAAATCGTTGCCTTGTTTGAAGCTTGTTCAGGTTTGAAGGTAAATTGGGTAAAATCTGCTATTTGCAATATCAATGTGGAAGATTCTAAATTTTTTGAAGTATCTCAGAGACTAAATTGTAAGGAAGAAGGAATACAATTTCTTTATCTTGGTCTTCCATTGTGTGGTCATCCAAATTCTTCTTTTTAGCAACCGATGAAAGACAAAAACCACAACAAACTTGATAGATGGAACCATTTTAACCTTAGAGAGGAGGTCGTTTGACTCTTTGTGGTATAGTTTTAACCAGCATTCCTTTATATTATTCATCTTTTTTTGATATGCCTTCTTAGATGTGTTTGGATTTGGAGCATTTCCTACCAAAAAAAAAAAAATCTGGAAAGGTAACTCTAGAGGAAAGCTATTAATTTCGTGCGTTGGAACATTGCTTCTAAAGCTCAAGGGGTGGATGATGGTTTAGGCATTGGAGCTCTAAAATATAGAAAACAAATGTTGGTAAATAATTGGAGTTGGTGTTATATAAATGAGCCGCTAGTAGAAGGTGATCTCTAGTATTCATGGTGGTTCTTTTAATTGGCGTACGAAAGGAAATCCAATTGTAAGACTTGCCTTCCAATGATATTTGGATGGTAGGGTTCTGTAAAACCGCCAATTATAACACGTATGTACAAAGGGGTAGAAGTGGAAACTCCCCTTCCCCTTAATTAGGTTTTTGAAACACTTTGCATTTTGAAGGGAGTCGGTTAGTAGGCCAGTTTAGTAAGTCGGTTTAGTTTGGGGTTTGCTTATATATATTGTATTTTTGGGCTTCATTAGAGTATGCTTAAGACTTTTGTAGAATTTCTTTCTCTGTTTGAATTTCAAGGCGACCCAAGGCGCTCGCCAAAGGCGAGAGGCGAGGCAACCTTGGGTTGTTGCGCCTTGAAGGCAGCTAGGGCGAGTGCCTTCAACCAGGCGCTCGCCTCACTGCACCTTTTGTTGCCTTGATGCGCCTTTGCCATCTGCAAAGGCGAGCGCCTGTCTTTTTTTTTTCAATATTCAATATTTCAAACGTGTAGAAACAAGAGAGTTGGATGAAAGAGGAAAAGATGGGGGAGAAGAAGTATAGAAAAAAGAAAAGAATAGAAGGAAAGAAGAAAAGCAGAGTTCGGTGAAGGAAAATAAAAGACAGAAGAGAAGTATAGAAGAGAAGAAGAAGAAGAAAAGACGGTGGAAGAAAGTCTCATATGAGACATATGTATTGGTTGCATGAACTGCCAGATGGCAGTATCCTTACTCATTTCTAGAAGAATTAAATAGGAATGGACTGAATGGTTGCATGAACTGCCGTCTGGCAATTTACTCCCAATAAATATAAGGGTTTGTAAAAGTTCCATGTTGAATAGTTAATCAATTCCATCTCCTCTCAATAAATATAAGCAGCTAGCAATTTATGCTTTTAGAATTGGGTGTACATATATATATATTATTTATAATTGTATTCAGGCAACGCCTTTTTGTCGCCTCTCGCCTTGAGGCGATTAGAAGACTTGTCGCCCTTGAGTGCGCCTTGCGCTTTGAAAACACTAGTTTGAAAGGTGTGGGAGACGACACCATCTCGAATTGGTGAAGTTCGTATTGTGATCTTGTGTTAAATAAATATTGTTGTTAAGTATCCTAATAATTTGGTATCAGAACAAGTCATCCTAGGAAAGACACAAGGAATGGCGCAAAAGCAACTAGAGGAGCGTATAGTTGAGGCTGAAAAAAGTACGGGAGGTATGCGGGAGAAATTACCAGAACTAGAAAAATCTGTCGCCAAACTTAACTAG

mRNA sequence

ATGCCCATTTTTGGAGGTTCCCCGAACGATTGGTTGTTTCAGGCGGCACAATATTTCACTACTCAAAGGCTGTCCAATGAAGAAAAAGTGCAGGCAGCGACTATTTCCTTCACTGAGGCAGCGTTGCAGTGGCTTCAATGGGCAGAAGGCAAGGAATCGTTACAGGGATGGAAGGATCTCATGAATCGGATATTCGAAAGATTCAAACCTATGCAAGAAGGCTCCGTATGTGCGAGATTCCTAGTTGCGCGACAAGACAACACTGTACCAGAGTTCAGAGAATGTTTTGAAGAATTATCAGCACCCCTGCCACACCTAACAGACGAGATTATAGAGAGCTTGTTTTTTAATGGACTGGACCCAGAGTCGATTAAGGAGATGGGCCTCTGTATAGATGCGATAAAAAAAATTATGAGACCATTGAAGATTATAGGCCATTCTGGAGTGTTCAAGATGAAATTGGGGAAATTTCGATCATTTCCCAACAATCAAATGTCAACACTAGGCAAAATCTACCCAAAAGTCAACTTGTGGCCAACTCAAGAGTCAAGCCAAAATCCCGAGGGCAACGCTATGCTCAACACCGCAAGGCATTGTGCATCCAAAGGGGACAGCGTCAAGTCGTTGCCCTTAGCATCTCGATGCTCTAGGACCGCTGGCGCTGAAATTCCAACATCTCAACGTTGGCCCAGCGACTCAACGAGGTCTACTACGCGCTCACTTCCATATGCCTTTCGTCCGGAGCGTCTTCACGTTAGGAGAGTTCCTTTGTTAATCTTAAAAGATCCCTGTCCTTTTGAAGTCATTTCTGGTCTTAAGATTAATGGAGGAAAAAGTTGTTGCCCGTCCAAGTTGGCGTCATGGGGACGTTGGAGGAATGAAGAGGACTTGGAGCATTTATGGTTTGAAGGCGACCCAAGGCGCTCGCCAAAGGCGAGAGGCGAGGCAACCTTGGGTTGTTGCGCCTTGAAGGCAGCTAGGGCGAGTGCCTTCAACCAGGCGCTCGCCTCACTGCACCTTTTGCAACGCCTTTTTGTCGCCTCTCGCCTTGAGGCGATTAGAAGACTTGTCGCCCTTGAGTGCGCCTTGCGCTTTGAAAACACTAGTTTGAAAGAACAAGTCATCCTAGGAAAGACACAAGGAATGGCGCAAAAGCAACTAGAGGAGCGTATAGTTGAGGCTGAAAAAAGTACGGGAGGTATGCGGGAGAAATTACCAGAACTAGAAAAATCTGTCGCCAAACTTAACTAG

Coding sequence (CDS)

ATGCCCATTTTTGGAGGTTCCCCGAACGATTGGTTGTTTCAGGCGGCACAATATTTCACTACTCAAAGGCTGTCCAATGAAGAAAAAGTGCAGGCAGCGACTATTTCCTTCACTGAGGCAGCGTTGCAGTGGCTTCAATGGGCAGAAGGCAAGGAATCGTTACAGGGATGGAAGGATCTCATGAATCGGATATTCGAAAGATTCAAACCTATGCAAGAAGGCTCCGTATGTGCGAGATTCCTAGTTGCGCGACAAGACAACACTGTACCAGAGTTCAGAGAATGTTTTGAAGAATTATCAGCACCCCTGCCACACCTAACAGACGAGATTATAGAGAGCTTGTTTTTTAATGGACTGGACCCAGAGTCGATTAAGGAGATGGGCCTCTGTATAGATGCGATAAAAAAAATTATGAGACCATTGAAGATTATAGGCCATTCTGGAGTGTTCAAGATGAAATTGGGGAAATTTCGATCATTTCCCAACAATCAAATGTCAACACTAGGCAAAATCTACCCAAAAGTCAACTTGTGGCCAACTCAAGAGTCAAGCCAAAATCCCGAGGGCAACGCTATGCTCAACACCGCAAGGCATTGTGCATCCAAAGGGGACAGCGTCAAGTCGTTGCCCTTAGCATCTCGATGCTCTAGGACCGCTGGCGCTGAAATTCCAACATCTCAACGTTGGCCCAGCGACTCAACGAGGTCTACTACGCGCTCACTTCCATATGCCTTTCGTCCGGAGCGTCTTCACGTTAGGAGAGTTCCTTTGTTAATCTTAAAAGATCCCTGTCCTTTTGAAGTCATTTCTGGTCTTAAGATTAATGGAGGAAAAAGTTGTTGCCCGTCCAAGTTGGCGTCATGGGGACGTTGGAGGAATGAAGAGGACTTGGAGCATTTATGGTTTGAAGGCGACCCAAGGCGCTCGCCAAAGGCGAGAGGCGAGGCAACCTTGGGTTGTTGCGCCTTGAAGGCAGCTAGGGCGAGTGCCTTCAACCAGGCGCTCGCCTCACTGCACCTTTTGCAACGCCTTTTTGTCGCCTCTCGCCTTGAGGCGATTAGAAGACTTGTCGCCCTTGAGTGCGCCTTGCGCTTTGAAAACACTAGTTTGAAAGAACAAGTCATCCTAGGAAAGACACAAGGAATGGCGCAAAAGCAACTAGAGGAGCGTATAGTTGAGGCTGAAAAAAGTACGGGAGGTATGCGGGAGAAATTACCAGAACTAGAAAAATCTGTCGCCAAACTTAACTAG

Protein sequence

MPIFGGSPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKDLMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEELSAPLPHLTDEIIESLFFNGLDPESIKEMGLCIDAIKKIMRPLKIIGHSGVFKMKLGKFRSFPNNQMSTLGKIYPKVNLWPTQESSQNPEGNAMLNTARHCASKGDSVKSLPLASRCSRTAGAEIPTSQRWPSDSTRSTTRSLPYAFRPERLHVRRVPLLILKDPCPFEVISGLKINGGKSCCPSKLASWGRWRNEEDLEHLWFEGDPRRSPKARGEATLGCCALKAARASAFNQALASLHLLQRLFVASRLEAIRRLVALECALRFENTSLKEQVILGKTQGMAQKQLEERIVEAEKSTGGMREKLPELEKSVAKLN
Homology
[Close]
BLAST of Spg036941 vs. NCBI nr
Match: XP_022897442.1 (uncharacterized protein LOC111411108 [Olea europaea var. sylvestris])

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-24
Identity = 60/142 (42.25%), Postives = 89/142 (62.68%), Query Frame = 0 

Query: 1   MPIF-GGSPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKD 60
           MP+F G  P+ W+F+  +YF+  RLS EEK++AA + F   AL W QW E +  ++ W+D
Sbjct: 153 MPVFEGNDPDGWVFRVERYFSVNRLSEEEKLEAAAVCFDGEALAWFQWEERRRPVKAWED 212

Query: 61  LMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEELSAPLPHLTDEIIESLFFNGL 120
           L   +  RF+P QEGS+CA+FL  +Q  TV E+R  FE L++PL  +++E++E  F NGL
Sbjct: 213 LKAHLLRRFRPSQEGSLCAQFLSLQQTTTVREYRRRFETLASPLLGISEEVMECSFLNGL 272

Query: 121 DPESIKEMGLCIDAIKKIMRPL 142
             E        I A  +++RPL
Sbjct: 273 RAE--------IRAEVQLLRPL 286

[Close]
BLAST of Spg036941 vs. NCBI nr
Match: KAA0037917.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 5.1e-24
Identity = 53/128 (41.41%), Postives = 79/128 (61.72%), Query Frame = 0 

Query: 1   MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKD 60
           MP+F G  P  W ++A  YF    L+  EK++ A +S     L W +WAE ++  + W++
Sbjct: 102 MPVFNGEDPEGWFYRAEHYFQMHLLNEREKLEIAVVSLEGRGLNWFRWAENRKRFRSWRE 161

Query: 61  LMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEELSAPLPHLTDEIIESLFFNGL 120
           L  R++ RF+    G+ CARFL  +Q+ TV E+ + FEELSAPLP + +E++E  F NGL
Sbjct: 162 LKERMYNRFRCRDFGTACARFLAIKQEGTVSEYLQKFEELSAPLPEMAEEVLEGTFTNGL 221

Query: 121 DPESIKEM 128
           DP   KE+
Sbjct: 222 DPRIRKEV 229

[Close]
BLAST of Spg036941 vs. NCBI nr
Match: TYK18994.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 5.1e-24
Identity = 53/128 (41.41%), Postives = 79/128 (61.72%), Query Frame = 0 

Query: 1   MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKD 60
           MP+F G  P  W ++A  YF    L+  EK++ A +S     L W +WAE ++  + W++
Sbjct: 102 MPVFNGEDPEGWFYRAEHYFQMHLLNEREKLEIAVVSLEGRGLNWFRWAENRKRFRSWRE 161

Query: 61  LMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEELSAPLPHLTDEIIESLFFNGL 120
           L  R++ RF+    G+ CARFL  +Q+ TV E+ + FEELSAPLP + +E++E  F NGL
Sbjct: 162 LKERMYNRFRCRDFGTACARFLAIKQEGTVSEYLQKFEELSAPLPEMAEEVLEGTFTNGL 221

Query: 121 DPESIKEM 128
           DP   KE+
Sbjct: 222 DPRIRKEV 229

[Close]
BLAST of Spg036941 vs. NCBI nr
Match: TYK05726.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-23
Identity = 54/128 (42.19%), Postives = 78/128 (60.94%), Query Frame = 0 

Query: 1   MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKD 60
           MP+F G  P  W ++A  YF    L+  EK++ A +S     L W +WAE ++  + W++
Sbjct: 102 MPVFNGEDPEGWFYRAEHYFQMHLLNEREKLKIAVVSLEGRGLNWFRWAENRKRFRSWRE 161

Query: 61  LMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEELSAPLPHLTDEIIESLFFNGL 120
           L  R++ RF+    G+ CARFL  RQ  TV E+ + FEELSAPLP + +E++E  F NGL
Sbjct: 162 LKERMYNRFRCRDFGTACARFLAIRQVGTVSEYLQKFEELSAPLPEMAEEVLEKTFTNGL 221

Query: 121 DPESIKEM 128
           DP   KE+
Sbjct: 222 DPRIRKEV 229

[Close]
BLAST of Spg036941 vs. NCBI nr
Match: TYK03081.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-23
Identity = 64/189 (33.86%), Postives = 103/189 (54.50%), Query Frame = 0 

Query: 1    MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKD 60
            MP+F    P  W ++A  YF    LS  EK++ A +S     L W +WAE ++  + W++
Sbjct: 857  MPVFNSEDPEGWFYRAEHYFQMHLLSEREKLKIAVVSLEGRGLSWFRWAENRKRFRSWRE 916

Query: 61   LMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEELSAPLPHLTDEIIESLFFNGL 120
            L  R++ RF+    G+ CARFL  +Q+ TV E+ + FEELSA LP + +E++E  F NGL
Sbjct: 917  LKERMYNRFRCRDFGTACARFLAIKQEGTVGEYLQKFEELSASLPEMAEEVLEGTFTNGL 976

Query: 121  DPESIKEM-GLCIDAIKKIMRPLKIIGHSGVFKMKLGKFRSFPNNQMSTLGKIYPKVNLW 180
            DP   KE+  + +  ++ +M   ++       K +  K   +P    S L K   K NL 
Sbjct: 977  DPRIRKEVFSMRVVGLEDLMEAAQLAEE----KAEWSKGGPYP----SPLSKEMMKTNLG 1036

Query: 181  PTQESSQNP 188
            P+ +++ +P
Sbjct: 1037 PSPKTNGSP 1037

[Close]
BLAST of Spg036941 vs. ExPASy TrEMBL
Match: A0A5A7T8L1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00950 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.5e-24
Identity = 53/128 (41.41%), Postives = 79/128 (61.72%), Query Frame = 0 

Query: 1   MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKD 60
           MP+F G  P  W ++A  YF    L+  EK++ A +S     L W +WAE ++  + W++
Sbjct: 102 MPVFNGEDPEGWFYRAEHYFQMHLLNEREKLEIAVVSLEGRGLNWFRWAENRKRFRSWRE 161

Query: 61  LMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEELSAPLPHLTDEIIESLFFNGL 120
           L  R++ RF+    G+ CARFL  +Q+ TV E+ + FEELSAPLP + +E++E  F NGL
Sbjct: 162 LKERMYNRFRCRDFGTACARFLAIKQEGTVSEYLQKFEELSAPLPEMAEEVLEGTFTNGL 221

Query: 121 DPESIKEM 128
           DP   KE+
Sbjct: 222 DPRIRKEV 229

[Close]
BLAST of Spg036941 vs. ExPASy TrEMBL
Match: A0A5D3D605 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold154G00180 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.5e-24
Identity = 53/128 (41.41%), Postives = 79/128 (61.72%), Query Frame = 0 

Query: 1   MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKD 60
           MP+F G  P  W ++A  YF    L+  EK++ A +S     L W +WAE ++  + W++
Sbjct: 102 MPVFNGEDPEGWFYRAEHYFQMHLLNEREKLEIAVVSLEGRGLNWFRWAENRKRFRSWRE 161

Query: 61  LMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEELSAPLPHLTDEIIESLFFNGL 120
           L  R++ RF+    G+ CARFL  +Q+ TV E+ + FEELSAPLP + +E++E  F NGL
Sbjct: 162 LKERMYNRFRCRDFGTACARFLAIKQEGTVSEYLQKFEELSAPLPEMAEEVLEGTFTNGL 221

Query: 121 DPESIKEM 128
           DP   KE+
Sbjct: 222 DPRIRKEV 229

[Close]
BLAST of Spg036941 vs. ExPASy TrEMBL
Match: A0A5D3BTN5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001880 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.5e-24
Identity = 64/189 (33.86%), Postives = 103/189 (54.50%), Query Frame = 0 

Query: 1    MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKD 60
            MP+F    P  W ++A  YF    LS  EK++ A +S     L W +WAE ++  + W++
Sbjct: 857  MPVFNSEDPEGWFYRAEHYFQMHLLSEREKLKIAVVSLEGRGLSWFRWAENRKRFRSWRE 916

Query: 61   LMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEELSAPLPHLTDEIIESLFFNGL 120
            L  R++ RF+    G+ CARFL  +Q+ TV E+ + FEELSA LP + +E++E  F NGL
Sbjct: 917  LKERMYNRFRCRDFGTACARFLAIKQEGTVGEYLQKFEELSASLPEMAEEVLEGTFTNGL 976

Query: 121  DPESIKEM-GLCIDAIKKIMRPLKIIGHSGVFKMKLGKFRSFPNNQMSTLGKIYPKVNLW 180
            DP   KE+  + +  ++ +M   ++       K +  K   +P    S L K   K NL 
Sbjct: 977  DPRIRKEVFSMRVVGLEDLMEAAQLAEE----KAEWSKGGPYP----SPLSKEMMKTNLG 1036

Query: 181  PTQESSQNP 188
            P+ +++ +P
Sbjct: 1037 PSPKTNGSP 1037

[Close]
BLAST of Spg036941 vs. ExPASy TrEMBL
Match: A0A5D3C5T9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002110 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.5e-24
Identity = 54/128 (42.19%), Postives = 78/128 (60.94%), Query Frame = 0 

Query: 1   MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKD 60
           MP+F G  P  W ++A  YF    L+  EK++ A +S     L W +WAE ++  + W++
Sbjct: 102 MPVFNGEDPEGWFYRAEHYFQMHLLNEREKLKIAVVSLEGRGLNWFRWAENRKRFRSWRE 161

Query: 61  LMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEELSAPLPHLTDEIIESLFFNGL 120
           L  R++ RF+    G+ CARFL  RQ  TV E+ + FEELSAPLP + +E++E  F NGL
Sbjct: 162 LKERMYNRFRCRDFGTACARFLAIRQVGTVSEYLQKFEELSAPLPEMAEEVLEKTFTNGL 221

Query: 121 DPESIKEM 128
           DP   KE+
Sbjct: 222 DPRIRKEV 229

[Close]
BLAST of Spg036941 vs. ExPASy TrEMBL
Match: W9QTX5 (Mediator of RNA polymerase II transcription subunit 25 OS=Morus notabilis OX=981085 GN=L484_013924 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-23
Identity = 54/130 (41.54%), Postives = 82/130 (63.08%), Query Frame = 0 

Query: 1   MPIFGG-SPNDWLFQAAQYFTTQRLSNEEKVQAATISFTEAALQWLQWAEGKESLQGWKD 60
           MP+F G +P+ W  +A +YF   +++  EK+  A +S    AL W QW +G+  ++ W  
Sbjct: 869 MPVFDGENPDGWSIRAERYFAMNKMTEREKLDVAVVSLEGEALAWFQWEDGRSPIRSWMV 928

Query: 61  LMNRIFERFKPMQEGSVCARFLVARQDNTVPEFRECFEELSAPLPHLTDEIIESLFFNGL 120
           L   + ERF+PMQEGS+C +FL  RQ+ TV ++R  FE L+APL  L+++++ES F  GL
Sbjct: 929 LKLMLLERFRPMQEGSLCEKFLSLRQETTVRDYRRQFEILAAPLTELSEQVLESTFVKGL 988

Query: 121 DPESIKEMGL 130
            PE   E+ L
Sbjct: 989 KPEIRAEIRL 998

The following BLAST results are available for this feature:
BLAST of Spg036941 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022897442.13.0e-2442.25uncharacterized protein LOC111411108 [Olea europaea var. sylvestris][more]
KAA0037917.15.1e-2441.41ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK18994.15.1e-2441.41ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK05726.11.1e-2342.19ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK03081.11.1e-2333.86ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Spg036941 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg036941 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T8L12.5e-2441.41Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3D6052.5e-2441.41Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BTN55.5e-2433.86Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3C5T95.5e-2442.19Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
W9QTX52.1e-2341.54Mediator of RNA polymerase II transcription subunit 25 OS=Morus notabilis OX=981... [more]
BLAST of Spg036941 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 32..120
e-value: 3.6E-7
score: 30.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 395..416

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg036941.1Spg036941.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding