Spg036885 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg036885
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA ligase 1
Location	scaffold5: 41719358 .. 41721869 (-)
RNA-Seq Expression	Spg036885
Synteny	Spg036885

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAACATGAAATTGCCAACTGCTAAAACAAGAACCAGGAAGCGAGGCTCTGATACCGATCTCACGAGCTCCGATCAGAGGAAGCGGACCAACGATGATATCGACCTCGATCTCGACCTTTCCGAGTACGTACTGTTTTCCACTTCTGTTCCACTTTCCAGTGATTTTGGAGAAGCTTGATGAGGATATTTACGGTATGCAGCGATCTCAAAGGGATAATGTCGGCGCTGAATCAGATCAGAGAGAGAGCTCAGAAGGACGACCAGAAGAAGAATGAAGAGACCATCTCAAGGTAATTTGAGTGGTTTTGCTCGATCGGAACTTATGATGATAGTTAATTGACTGGAGCAGATGAAATTGTGTATTCTTGTGTGCTTATTTCTGATTCTCAAATTTCTGAATACGGCTGCTCGTTTTCGCCTTCATTTTCTTTCTTCTGGTAGGTTTGAAATGACCTCAGTCGTAGTTGGACTTTATGATTTGTTTGATATGATTTTATTATAAAATTGAAATGATAGCCTGATTCAAACTTAGCTTGCTGGATCAGACTTGATTCGCCTCACCGTTTCTGTCAAATATTTGGCTGTTTTCCAACTTCAATCCATGTAGCTCTTTTAATGACAGATCTCGTTCATTTTCTAAGCTAACACTCTTCTTCCTGTCCTGCACTAAAACGATGTTTTGAATGTTAATTGCATTTTATTGACAGCGTAGCGACTGAGATCAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGTAGGTTTTAGAACTATCCAGAACGAGTTCAGCATAGTTGCTCACTTCTATTTTTGGTTGAATTAGTATAAACGAATTACAGCAATTGATTTCCTCCAACCAATTTCAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAAGAGGTCGGTGGAGAACGACTTGAAATAGAAACCATTCAAGAGCAAATTTGAAGTCATTATATTTTGCTCTTAGCTTCGTTGTATAAATACATTTTCCAGTTGTTGCGATAAAATTAATATGGCTTCTTTATAGTGTGAAAATTGTTTGAAGGACGAAACTGCTAAATTCCAAGCACTTTACGAGAAATTTACAAAAGAAAAAGCTACACATCTTCAAGCCATAAAAGGTAATATCCCCTTCGAGTATTATGGTGAAAAGTTATGCATCATTTACTCCTTGCTTCTCTTTAGACTAAATTTCATTTGATTGATCATATATTAACTGCGTGTGAGGCCTTCATAATGCATGAGCAAATCCCTATCCAGCTTTATAAATTTCCACTATCGCATTCATGAGGCTAGGTTTCATTCAATATCATAAAAGAATCCTCGGTCTGTGAGACATCATCGTGCTGAGTGGAAATTGGCAAGCATTGACCGTGGAGTTAGGTCCTCAACAACGATAAATGTTCCATCAATAATTCTTGCGTTTAGGAATCCTTTCCGCAAACAATTCTGATGTGTATGATCTATCAGTATTGAAGAATCTTTCACTTTTTGGTCTAAAATAACAAGTTTATTTTCTTTTAACTATTATCAATCTGGAAAATATTTTGGTATTTTCAGAAAAGGGGCCTATGATCTTATACCATTCGAGCTCTAAGAAAAGCCACCTCTTTCTTCTCCAAGACGATTCTTTAAATAGTTATGTTCCCCCACTTTTGTGGTTATGTTTTTAATATCAGATGCTGTTTGGCTTTGGCAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGTAAGCAAGAAGTTATGCATCAATCAGCACAAAACGCTTTATTACTATCTATTTCCCTTCGTATATGTAACAGGAAAGAGAGAAAGGAACCTGATATCTGAGCAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAGGAGTCTTTGAAAAGGAAAAAGCAGGTATACACCTGTGATTATCAAAATTATCACTTAGACTTCCCATTCTATGGCAAGGTGTTCCTTATAACACTTGATCTTCAACACAGGATGGTAAGACTTTCAGCTTTCTGCGGAAAACACTTGGTTCATTTCTTGAAACTGGTTCAGATGAGGACTTCCCAGCTGATGATTGAAGGTGTTAATGAATTGGGCAGTGCAGAAAAAAACTCATTATATTTCCTCCGTGTCACCCTATGAGGTACTCGGAAATCAATCTTCTCTCTCTCTCCCTCTCCACACAACACACATAGACAAACAATTTCCATTGCTGAGATATCTTAGTCTGCATTCTCGTACAAGCACATTTCTCTTTTTTTCTTTTTTTCGTTTTTTTTTTTTTTAAATAGTGGTATATTTCTCTTTTAAGGATCATTAATTCTGTTCTGTCAATAGTGTAGAATGTAATTTGCAATACTGAATTGAGCGTTAAAGGCCATTTCCTTAATTTTAATTGTTGGCCTTAGAGCTGTAGCTGCTTTTGCCTCTTTAACAATTCTGCCGATCTCTATGAATTCTGAAGTTGTC

mRNA sequence

ATGGGGAACATGAAATTGCCAACTGCTAAAACAAGAACCAGGAAGCGAGGCTCTGATACCGATCTCACGAGCTCCGATCAGAGGAAGCGGACCAACGATGATATCGACCTCGATCTCGACCTTTCCGAGTACGTACTCGATCTCAAAGGGATAATGTCGGCGCTGAATCAGATCAGAGAGAGAGCTCAGAAGGACGACCAGAAGAAGAATGAAGAGACCATCTCAAGCGTAGCGACTGAGATCAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAAGAGTGTGAAAATTGTTTGAAGGACGAAACTGCTAAATTCCAAGCACTTTACGAGAAATTTACAAAAGAAAAAGCTACACATCTTCAAGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGAAAGAGAGAAAGGAACCTGATATCTGAGCAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAGGAGTCTTTGAAAAGGAAAAAGCAGGATGGTAAGACTTTCAGCTTTCTGCGGAAAACACTTGGTTCATTTCTTGAAACTGGTTCAGATGAGGACTTCCCAGCTGATGATTGA

Coding sequence (CDS)

ATGGGGAACATGAAATTGCCAACTGCTAAAACAAGAACCAGGAAGCGAGGCTCTGATACCGATCTCACGAGCTCCGATCAGAGGAAGCGGACCAACGATGATATCGACCTCGATCTCGACCTTTCCGAGTACGTACTCGATCTCAAAGGGATAATGTCGGCGCTGAATCAGATCAGAGAGAGAGCTCAGAAGGACGACCAGAAGAAGAATGAAGAGACCATCTCAAGCGTAGCGACTGAGATCAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAAGAGTGTGAAAATTGTTTGAAGGACGAAACTGCTAAATTCCAAGCACTTTACGAGAAATTTACAAAAGAAAAAGCTACACATCTTCAAGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGAAAGAGAGAAAGGAACCTGATATCTGAGCAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAGGAGTCTTTGAAAAGGAAAAAGCAGGATGGTAAGACTTTCAGCTTTCTGCGGAAAACACTTGGTTCATTTCTTGAAACTGGTTCAGATGAGGACTTCCCAGCTGATGATTGA

Protein sequence

MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTLGSFLETGSDEDFPADD

Homology

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BLAST of Spg036885 vs. NCBI nr
Match: XP_023001751.1 (DNA ligase 1 [Cucurbita maxima])

HSP 1 Score: 364.0 bits (933), Expect = 9.1e-97
Identity = 200/219 (91.32%), Postives = 210/219 (95.89%), Query Frame = 0


Query: 1   MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRE 60
           MGNMK+P AKTRTRKR SD DLTSSD+RKRTN+DIDLDLDLS+   DLKGI+SALNQI+E
Sbjct: 1   MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSD---DLKGIVSALNQIKE 60

Query: 61  RAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120
           RAQKDDQKKNEETISSV+TEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK
Sbjct: 61  RAQKDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120

Query: 121 FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIA 180
           FQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIA
Sbjct: 121 FQALYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIA 180

Query: 181 QLEESLKRKKQDGKTFSFLRKTLGSFLETGSDEDFPADD 220
           QLEESLKRKKQD +TFS LRKTLGSFLETGSDEDFP DD
Sbjct: 181 QLEESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 216

[Close]

BLAST of Spg036885 vs. NCBI nr
Match: XP_022927498.1 (DNA ligase 1 [Cucurbita moschata] >KAG6583999.1 hypothetical protein SDJN03_19931, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019621.1 hypothetical protein SDJN02_18584, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 363.2 bits (931), Expect = 1.5e-96
Identity = 200/219 (91.32%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1   MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRE 60
           MGNMK+P AKTRTRKR SD+DLTSSD+RKRTN+DIDLDLDLS+   DLKGI+SALNQI+E
Sbjct: 1   MGNMKIPIAKTRTRKRVSDSDLTSSDKRKRTNEDIDLDLDLSD---DLKGIVSALNQIKE 60

Query: 61  RAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120
           RAQKDDQKKNEETISSV+TEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK
Sbjct: 61  RAQKDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120

Query: 121 FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIA 180
           FQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIA
Sbjct: 121 FQALYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIA 180

Query: 181 QLEESLKRKKQDGKTFSFLRKTLGSFLETGSDEDFPADD 220
           QLEESLKRKKQD +TFS LRKTLGSFLETGSDEDF ADD
Sbjct: 181 QLEESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFQADD 216

[Close]

BLAST of Spg036885 vs. NCBI nr
Match: XP_022140180.1 (DNA ligase 1 [Momordica charantia] >XP_022140181.1 DNA ligase 1 [Momordica charantia] >XP_022140182.1 DNA ligase 1 [Momordica charantia])

HSP 1 Score: 362.1 bits (928), Expect = 3.4e-96
Identity = 199/219 (90.87%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1   MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRE 60
           MGN+K+PTAKTRTRKR SD DLTSSDQRKRT +DIDLDLDLS+   DLKGI+SALNQIRE
Sbjct: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSD---DLKGIVSALNQIRE 60

Query: 61  RAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120
           +AQKDDQKKNEETISSV++EIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK
Sbjct: 61  KAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120

Query: 121 FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIA 180
           FQAL+EKFTKE+ATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACA+KIA
Sbjct: 121 FQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIA 180

Query: 181 QLEESLKRKKQDGKTFSFLRKTLGSFLETGSDEDFPADD 220
           QLEESLKRKKQD KTFS LRKTLGSFLETGSDEDFPA+D
Sbjct: 181 QLEESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216

[Close]

BLAST of Spg036885 vs. NCBI nr
Match: XP_004146600.1 (DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X1 [Cucumis sativus] >KGN64675.1 hypothetical protein Csa_013771 [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 1.3e-95
Identity = 198/219 (90.41%), Postives = 210/219 (95.89%), Query Frame = 0


Query: 1   MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRE 60
           MGN+K+PTAKTR+RKR SDTDL+SSDQRK+TNDDIDLDLDLS+   DLKGI+SALNQI+E
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSD---DLKGIVSALNQIKE 60

Query: 61  RAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120
           RA KDD KKNEETISSVATE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAK
Sbjct: 61  RAHKDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAK 120

Query: 121 FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIA 180
           FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIA
Sbjct: 121 FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIA 180

Query: 181 QLEESLKRKKQDGKTFSFLRKTLGSFLETGSDEDFPADD 220
           QLEESLKRKKQD KTFS LRKTLGSFL+TGSDEDFPADD
Sbjct: 181 QLEESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Spg036885 vs. NCBI nr
Match: XP_023520366.1 (DNA ligase 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 359.8 bits (922), Expect = 1.7e-95
Identity = 198/219 (90.41%), Postives = 210/219 (95.89%), Query Frame = 0


Query: 1   MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRE 60
           MGNMK+P AKTRTRKR S++DLTSSD+RKRTN+DIDLDLDLS+   DLKGI+SALNQI+E
Sbjct: 1   MGNMKIPIAKTRTRKRVSESDLTSSDKRKRTNEDIDLDLDLSD---DLKGIVSALNQIKE 60

Query: 61  RAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120
           RAQKDDQKKNEETISSV+TEIR MIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK
Sbjct: 61  RAQKDDQKKNEETISSVSTEIRAMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120

Query: 121 FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIA 180
           FQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIA
Sbjct: 121 FQALYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIA 180

Query: 181 QLEESLKRKKQDGKTFSFLRKTLGSFLETGSDEDFPADD 220
           QLEESLKRKKQD +TFS LRKTLGSFLETGSDEDF ADD
Sbjct: 181 QLEESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFQADD 216

[Close]

BLAST of Spg036885 vs. ExPASy TrEMBL
Match: A0A6J1KJH3 (DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.4e-97
Identity = 200/219 (91.32%), Postives = 210/219 (95.89%), Query Frame = 0


Query: 1   MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRE 60
           MGNMK+P AKTRTRKR SD DLTSSD+RKRTN+DIDLDLDLS+   DLKGI+SALNQI+E
Sbjct: 1   MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSD---DLKGIVSALNQIKE 60

Query: 61  RAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120
           RAQKDDQKKNEETISSV+TEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK
Sbjct: 61  RAQKDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120

Query: 121 FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIA 180
           FQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIA
Sbjct: 121 FQALYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIA 180

Query: 181 QLEESLKRKKQDGKTFSFLRKTLGSFLETGSDEDFPADD 220
           QLEESLKRKKQD +TFS LRKTLGSFLETGSDEDFP DD
Sbjct: 181 QLEESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 216

[Close]

BLAST of Spg036885 vs. ExPASy TrEMBL
Match: A0A6J1EL64 (DNA ligase 1 OS=Cucurbita moschata OX=3662 GN=LOC111434306 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 7.5e-97
Identity = 200/219 (91.32%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1   MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRE 60
           MGNMK+P AKTRTRKR SD+DLTSSD+RKRTN+DIDLDLDLS+   DLKGI+SALNQI+E
Sbjct: 1   MGNMKIPIAKTRTRKRVSDSDLTSSDKRKRTNEDIDLDLDLSD---DLKGIVSALNQIKE 60

Query: 61  RAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120
           RAQKDDQKKNEETISSV+TEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK
Sbjct: 61  RAQKDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120

Query: 121 FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIA 180
           FQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIA
Sbjct: 121 FQALYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIA 180

Query: 181 QLEESLKRKKQDGKTFSFLRKTLGSFLETGSDEDFPADD 220
           QLEESLKRKKQD +TFS LRKTLGSFLETGSDEDF ADD
Sbjct: 181 QLEESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFQADD 216

[Close]

BLAST of Spg036885 vs. ExPASy TrEMBL
Match: A0A6J1CEE2 (DNA ligase 1 OS=Momordica charantia OX=3673 GN=LOC111010912 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.7e-96
Identity = 199/219 (90.87%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1   MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRE 60
           MGN+K+PTAKTRTRKR SD DLTSSDQRKRT +DIDLDLDLS+   DLKGI+SALNQIRE
Sbjct: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSD---DLKGIVSALNQIRE 60

Query: 61  RAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120
           +AQKDDQKKNEETISSV++EIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK
Sbjct: 61  KAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120

Query: 121 FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIA 180
           FQAL+EKFTKE+ATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACA+KIA
Sbjct: 121 FQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIA 180

Query: 181 QLEESLKRKKQDGKTFSFLRKTLGSFLETGSDEDFPADD 220
           QLEESLKRKKQD KTFS LRKTLGSFLETGSDEDFPA+D
Sbjct: 181 QLEESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216

[Close]

BLAST of Spg036885 vs. ExPASy TrEMBL
Match: A0A0A0LRW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.3e-96
Identity = 198/219 (90.41%), Postives = 210/219 (95.89%), Query Frame = 0


Query: 1   MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRE 60
           MGN+K+PTAKTR+RKR SDTDL+SSDQRK+TNDDIDLDLDLS+   DLKGI+SALNQI+E
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSD---DLKGIVSALNQIKE 60

Query: 61  RAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120
           RA KDD KKNEETISSVATE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAK
Sbjct: 61  RAHKDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAK 120

Query: 121 FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIA 180
           FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIA
Sbjct: 121 FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIA 180

Query: 181 QLEESLKRKKQDGKTFSFLRKTLGSFLETGSDEDFPADD 220
           QLEESLKRKKQD KTFS LRKTLGSFL+TGSDEDFPADD
Sbjct: 181 QLEESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Spg036885 vs. ExPASy TrEMBL
Match: A0A5D3DS94 (DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00780 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.2e-94
Identity = 197/219 (89.95%), Postives = 208/219 (94.98%), Query Frame = 0


Query: 1   MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSEYVLDLKGIMSALNQIRE 60
           M N+K+PTAKTR+RKR SDTDLTSS+QR RTNDDIDLDLDLS+   DLKGI+SALNQI+E
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSD---DLKGIVSALNQIKE 60

Query: 61  RAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAK 120
           RA KDD KKNEETISSVATE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAK
Sbjct: 61  RAHKDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAK 120

Query: 121 FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIA 180
           FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIA
Sbjct: 121 FQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIA 180

Query: 181 QLEESLKRKKQDGKTFSFLRKTLGSFLETGSDEDFPADD 220
           QLEESLKRKKQD KTFS LRKTLGSFL+TGSDEDFPADD
Sbjct: 181 QLEESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Spg036885 vs. TAIR 10
Match: AT2G33793.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 228.0 bits (580), Expect = 7.2e-60
Identity = 123/185 (66.49%), Postives = 156/185 (84.32%), Query Frame = 0


Query: 36  DLDLDLSEYVLDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKD 95
           +LD+D+S    D KGIMSAL Q RE+A +D +KK EE+ISSV+TE+++ I+E+KSK EK+
Sbjct: 31  ELDVDVSS---DFKGIMSALQQFREKAHEDGRKKKEESISSVSTEVKSKIDELKSKLEKE 90

Query: 96  RQSFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFA 155
           RQ+F+KALSKSSKECEN LKDE AKF+ L++KF K+KA HLQ +KDTISKFEE+KERL+ 
Sbjct: 91  RQNFSKALSKSSKECENILKDEAAKFEELHKKFVKDKADHLQGLKDTISKFEEDKERLYM 150

Query: 156 KYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTLGSFLET-GSDED 215
           +YEQLRK+E+ +I+EQEK C EK+AQLEESLK+KK+  KTFS LRKTLGSFLE   SDE+
Sbjct: 151 RYEQLRKKEKTMITEQEKFCTEKLAQLEESLKKKKRGDKTFSILRKTLGSFLENEASDEE 210

Query: 216 FPADD 220
           FP D+
Sbjct: 211 FPPDE 212

[Close]

BLAST of Spg036885 vs. TAIR 10
Match: AT2G46980.2 (unknown protein; Has 3995 Blast hits to 3325 proteins in 374 species: Archae - 19; Bacteria - 205; Metazoa - 2201; Fungi - 364; Plants - 149; Viruses - 22; Other Eukaryotes - 1035 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 9.6e-04
Identity = 35/135 (25.93%), Postives = 63/135 (46.67%), Query Frame = 0


Query: 54  ALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENC 113
           AL     + +   +KK+ E I+SV+ EI   +E +KS    +    +       K  E  
Sbjct: 636 ALQNFERKLKSAAEKKSSEIIASVSEEIHLELENIKSHIITEAGKTSNLAKTKRKHAETR 695

Query: 114 LKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEK 173
           L+++  K + ++EKF  + + HL+  K TI + E  +  L    ++ R   + LI+  E 
Sbjct: 696 LQEQEEKMRMIHEKFKDDVSHHLEDFKSTIEELEANQSELKGSIKKQRTSHQKLIAHFEG 755

Query: 174 ACAEKIAQLEESLKR 189
               K   L+++ KR
Sbjct: 756 GIETK---LDDATKR 767

[Close]

BLAST of Spg036885 vs. TAIR 10
Match: AT2G46980.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. )

HSP 1 Score: 41.6 bits (96), Expect = 9.6e-04
Identity = 35/135 (25.93%), Postives = 63/135 (46.67%), Query Frame = 0


Query: 54  ALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENC 113
           AL     + +   +KK+ E I+SV+ EI   +E +KS    +    +       K  E  
Sbjct: 636 ALQNFERKLKSAAEKKSSEIIASVSEEIHLELENIKSHIITEAGKTSNLAKTKRKHAETR 695

Query: 114 LKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEK 173
           L+++  K + ++EKF  + + HL+  K TI + E  +  L    ++ R   + LI+  E 
Sbjct: 696 LQEQEEKMRMIHEKFKDDVSHHLEDFKSTIEELEANQSELKGSIKKQRTSHQKLIAHFEG 755

Query: 174 ACAEKIAQLEESLKR 189
               K   L+++ KR
Sbjct: 756 GIETK---LDDATKR 767

The following BLAST results are available for this feature:

BLAST of Spg036885 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001751.1	9.1e-97	91.32	DNA ligase 1 [Cucurbita maxima]	[more]
XP_022927498.1	1.5e-96	91.32	DNA ligase 1 [Cucurbita moschata] >KAG6583999.1 hypothetical protein SDJN03_1993...	[more]
XP_022140180.1	3.4e-96	90.87	DNA ligase 1 [Momordica charantia] >XP_022140181.1 DNA ligase 1 [Momordica chara...	[more]
XP_004146600.1	1.3e-95	90.41	DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X...	[more]
XP_023520366.1	1.7e-95	90.41	DNA ligase 1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg036885 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg036885 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KJH3	4.4e-97	91.32	DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1	[more]
A0A6J1EL64	7.5e-97	91.32	DNA ligase 1 OS=Cucurbita moschata OX=3662 GN=LOC111434306 PE=4 SV=1	[more]
A0A6J1CEE2	1.7e-96	90.87	DNA ligase 1 OS=Momordica charantia OX=3673 GN=LOC111010912 PE=4 SV=1	[more]
A0A0A0LRW7	6.3e-96	90.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1	[more]
A0A5D3DS94	1.2e-94	89.95	DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg036885 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33793.1	7.2e-60	66.49	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]
AT2G46980.2	9.6e-04	25.93	unknown protein; Has 3995 Blast hits to 3325 proteins in 374 species: Archae - 1...	[more]
AT2G46980.3	9.6e-04	25.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 172..192
None	No IPR available	COILS	Coil	Coil	coord: 136..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR35295	DNA LIGASE-LIKE PROTEIN	coord: 8..219
None	No IPR available	PANTHER	PTHR35295:SF1	DNA LIGASE-LIKE PROTEIN	coord: 8..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg036885.1	Spg036885.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007131	reciprocal meiotic recombination
cellular_component	GO:0099086	synaptonemal structure
molecular_function	GO:0016874	ligase activity