Spg036875 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg036875
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold5: 47043209 .. 47043550 (+)
RNA-Seq Expression	Spg036875
Synteny	Spg036875

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAGAGAAGCGGAAGAAAGCGTCGCCGGAGGAGAACGACGGCGGAGTGGTCGAGGAGACGAAGAAGAAGAAGAAGAAGGCGAGGAAGGAGGAGAAAGAGACGGCGTCTGCGTCGGCGGCGGAGGTGGAGGTGGAGGAGCCGACGATGGAGGAGGTGGAGGAGTTCTATGCCATTTTGAGGAGGATGGATGTGGCTTTGCGATACTTGAAAGGGGCACAGAAGAGGCTGTCGGAGAGAAGGACGACGGCGGAGGAGACGGCGGCGGTAAGAACCGGAGAGGTTGGGGAAAATAAGGAACTGAATTTGAATGAAGTGCCGGCGGATTCTACTAATTAA

mRNA sequence

ATGGAGAAAGAGAAGCGGAAGAAAGCGTCGCCGGAGGAGAACGACGGCGGAGTGGTCGAGGAGACGAAGAAGAAGAAGAAGAAGGCGAGGAAGGAGGAGAAAGAGACGGCGTCTGCGTCGGCGGCGGAGGTGGAGGTGGAGGAGCCGACGATGGAGGAGGTGGAGGAGTTCTATGCCATTTTGAGGAGGATGGATGTGGCTTTGCGATACTTGAAAGGGGCACAGAAGAGGCTGTCGGAGAGAAGGACGACGGCGGAGGAGACGGCGGCGGTAAGAACCGGAGAGGTTGGGGAAAATAAGGAACTGAATTTGAATGAAGTGCCGGCGGATTCTACTAATTAA

Coding sequence (CDS)

ATGGAGAAAGAGAAGCGGAAGAAAGCGTCGCCGGAGGAGAACGACGGCGGAGTGGTCGAGGAGACGAAGAAGAAGAAGAAGAAGGCGAGGAAGGAGGAGAAAGAGACGGCGTCTGCGTCGGCGGCGGAGGTGGAGGTGGAGGAGCCGACGATGGAGGAGGTGGAGGAGTTCTATGCCATTTTGAGGAGGATGGATGTGGCTTTGCGATACTTGAAAGGGGCACAGAAGAGGCTGTCGGAGAGAAGGACGACGGCGGAGGAGACGGCGGCGGTAAGAACCGGAGAGGTTGGGGAAAATAAGGAACTGAATTTGAATGAAGTGCCGGCGGATTCTACTAATTAA

Protein sequence

MEKEKRKKASPEENDGGVVEETKKKKKKARKEEKETASASAAEVEVEEPTMEEVEEFYAILRRMDVALRYLKGAQKRLSERRTTAEETAAVRTGEVGENKELNLNEVPADSTN

Homology

[Close]

BLAST of Spg036875 vs. NCBI nr
Match: KAG6584363.1 (hypothetical protein SDJN03_20295, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.1 bits (279), Expect = 3.2e-21
Identity = 76/113 (67.26%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 1   MEKEKRKKASPEENDGGVVEETKKKKKKARKEEKETASASAAEVEVEEPTMEEVEEFYAI 60
           ME+EKRKK SP E +        K+ KK RKEE+E A+A+  E E+EEPT EEVEEFYAI
Sbjct: 1   MEREKRKKMSPGEKE-------TKRSKKTRKEEREAAAAAGVETEMEEPTTEEVEEFYAI 60

Query: 61  LRRMDVALRYLKGAQKRLSERRTTAEETAAVRTGEVGENKELNLNEVPADSTN 114
           LRRMDVALRYLKG  KR+ ERRTTA ETA V TG+  E +ELNLNEVPADSTN
Sbjct: 61  LRRMDVALRYLKG--KRVVERRTTA-ETAVVGTGKGQEIQELNLNEVPADSTN 103

[Close]

BLAST of Spg036875 vs. NCBI nr
Match: KGN64116.1 (hypothetical protein Csa_013670 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 3.3e-18
Identity = 74/113 (65.49%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 1   MEKEKRKKASPEENDGGVVEETKKKKKKARKEEKETASASAAEVEVEEPTMEEVEEFYAI 60
           ME+EKRK+ S E   GGVVEE K++KKK  K+E+E   A AA  EVEEP+ EEVEEFYAI
Sbjct: 1   MEREKRKEMS-EGEKGGVVEEMKRRKKKKIKKEEEKKEAVAA-AEVEEPSTEEVEEFYAI 60

Query: 61  LRRMDVALRYLKGAQKRLSERRTTAEETAAVRTGEVGENKELNLNEVPADSTN 114
           LRRMD ALRYLKG  KR+ ERRTT  ETA        ENKELNLNEVP+DS+N
Sbjct: 61  LRRMDEALRYLKG--KRVPERRTTMGETAV-----AVENKELNLNEVPSDSSN 104

[Close]

BLAST of Spg036875 vs. ExPASy TrEMBL
Match: A0A0A0LVR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-18
Identity = 74/113 (65.49%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 1   MEKEKRKKASPEENDGGVVEETKKKKKKARKEEKETASASAAEVEVEEPTMEEVEEFYAI 60
           ME+EKRK+ S E   GGVVEE K++KKK  K+E+E   A AA  EVEEP+ EEVEEFYAI
Sbjct: 1   MEREKRKEMS-EGEKGGVVEEMKRRKKKKIKKEEEKKEAVAA-AEVEEPSTEEVEEFYAI 60

Query: 61  LRRMDVALRYLKGAQKRLSERRTTAEETAAVRTGEVGENKELNLNEVPADSTN 114
           LRRMD ALRYLKG  KR+ ERRTT  ETA        ENKELNLNEVP+DS+N
Sbjct: 61  LRRMDEALRYLKG--KRVPERRTTMGETAV-----AVENKELNLNEVPSDSSN 104

The following BLAST results are available for this feature:

BLAST of Spg036875 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584363.1	3.2e-21	67.26	hypothetical protein SDJN03_20295, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN64116.1	3.3e-18	65.49	hypothetical protein Csa_013670 [Cucumis sativus]	[more]

BLAST of Spg036875 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg036875 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVR0	1.6e-18	65.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1	[more]

BLAST of Spg036875 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..113
None	No IPR available	PANTHER	PTHR35735:SF6	NIMIN2C PROTEIN	coord: 20..109
IPR034577	Protein NIM1-INTERACTING 2	PANTHER	PTHR35735	PROTEIN NIM1-INTERACTING 2	coord: 20..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg036875.1	Spg036875.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance