Spg036639 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg036639
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold5: 48753329 .. 48756155 (-)
RNA-Seq ExpressionSpg036639
SyntenySpg036639
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGCTCTGGTAGCTGGGAACTTTGTGGGATTTTCTTTCTTTAAAAGCAAAAACAAAAGAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGTATATTAATTCTCAATGTAACCATATAACTAAATATGCCCTTTTTTACGATCTTAGTGAGAACAGGAAACAAGTCTTTTTTGCCTTTACTAAAAAATCATAAAGATGTTATCATTATTATTTAAAAAAAAAAAAAAAACAAAAGATGCACCATAGGGATAGGGGCATGTTGAGGATCCCACATTGAAAATATTAGTGGAGACCTCAAAAAATATATTATTATTTTATATGATAATAATATGGAGAAATAAGTGCGATTGAGATTTCAACTAATGACATGGAGAAAATAAATAGGGAAAAATACACTTTTGGTCCCTTAGGTTTGGGTTAAGTTACACTTTGGTCCCTGAGTTTTCAAACTCAACAAAAATACTCCCTGCCGTCTATTTTTCTGTTAAATACTAACGGTGGCTGATGTGGCACTATTATTTTAATAAAAAAAATTATTTTTTAATTTTTTTAAATAAAAATATTAAAATAATAAAATATTATTATTTTAATATTTTTTATTTATTTCTCTCTCCCTTTTCTTTCTTCCCCTCCTTCTTCTTCATCTCCTCCCTCTCAACTCTGGTGGCCGGCCGGCCACCGCCGGAATGTTAAGTTTTTTTTTCTCCTTTCTCCCATTTTATTCTCTCCTTTCTTCTCTCTTTCCTTCATTTCTTTTTTTTTTTATTATTTTTTTTAAAGAAGGGAGAGAGAGGGAGGATCCGGCGCCGGCGACGGGAGGATATTTTCAAATCTGAAAATCAAACACCCAAAGCCAACGCACGAGAACGCTACTGCAGTTGTCTTCGCACGAGAACGTCGTCGCCGTCGAGCTGGAACCGCGTGTTCGTGAGTTTAGATCCAAGTCCAGATTCGCGCTGCTCGCCGCTGAGTTTGTGAGTTCAGATCCGCGCGCGTTCGCAGTCGAGTTCGTGAGTTCAGATTCGTACCTTGCCGCCGAGTTCCTGAGTTCAGATCCGAACCGTTCGCGCGTCGAGTTCGTGAGTTCTTATTCGCATGTCAGATCTGAGTTCATGAGTTTATATCCGCTCGTCTTCGCAGAAGCTTGTGAGTTCGTGAGTTGTAGCCTTCGCACGAGAACGCCGACAAACGAAAGGAAAGGGAACGCCGTCTTCGCTCGTGAGTTCGTGAGTTTTCGTCTTCTCTCATGAGTTTGCACAAAATCCTCCCCGATCCTCCCTCTGTTAAAAAATAAAAACAGAAGAAAGAAAATAAAGGAGAAGAAGAGAATAAAGGAAGAAGAAGAAGAAAGAAGAAACAAAAAAAAAATCTGGCGGCGACCGGCCACCGGAGTTTAAGAAGAAGGAGATGGGGAAGAAGGAAGAAGGAGATGGAGGAGAGAAAGAAGAAGGAGAATATAGAGAGAGAGAGAAAGAATTAAAAAAATTAATAAAATAATTTTTTTTTTTTTAATTTATTTTTATTTACAAAAATTTAAAATTAATTTTTTAATTCAAATAATAGTGCCACGTCAGCAGTCCGTTAGTATTTAACGGCAAACTGGATGGCAGGGAACAAAGTGGTCCTTATCTCAAACCTCATGGGTATTTTTGTTGAGTTTGAAAACTCAGGGACCAAAGTATAACTCAACCCAAACCTTAGGGACTAAAAGTGTATTTTTCCCAAATAAATATGTATCATTAAGGTATGCTAGTGTGAACATTGATATATATGTTTTTTATTGTTACTAATATGAGGTAGTGGACAATTTTGTTTACAATTTGGATAAGTTATCTATTGAATAAATCATTTAGAAATAAATATGTTGTTAAATTTTCGTATAGAGAAAATGCAATTGTTGTTAATATGAGATAATAAGATTGTATCGAAAAACTTTGTGGATGGATGGTGAATTGAACTATAAACCTTTTAGATGATAATTGGTATACAACCTCAACCTTAGGGCCCGTTTGATAGGCAATCCGGATCTTGTTTTATGTTTTCAGATTCACTAGATTTATTGAATATGCGTTTGGCATATGTGTTTTTGAAAAATGTTTTCGGGTTTTGTGATTAAAATAGTAGGAATCATGAAAACAATTTTTTTATGTTTTTATTGTATCGAGATTTTGAATTTGAAAATTTTAAATGTTAAATTGAATAAAAAAAACTTTAATAAATATAATATTTCACGTTATAAACTTAATTTATTTTTGTGAAATTAAAATTTGTATAATACAATGCATTATAACTAGAATTAAATGGTTATAAGACAACGAAGGCATCCAGTTCGCGGTCCAATCGCGCGCTAAGGGAAGTAGGGGTGGCGAGCTCTTCGACGCAAATTGTTCACGCAACAGCTCCGATTGCAGCGATCAATATGACAGCAGCGGATGAAGAGTCAGACACATACATGGCAGCGACAGTTATTCATGAAGCGACCCATACGACAGTAACAGACGAAGCCTTCAACCCAAATGCAGCAGTCTCGATCCCAAGGAAGGCTTTGATCTCACCGCCTCAAGGGATTTGGAAGATGAACTGTGACGCTTCGTGGTCAGATGAGCGAAATCTGGGAGGAATCGACTGGATTTTACGCCACTGGTTTGAAACTCCTCTGATGGCAGGATACAAAGTTGTGAAACGTCAGTGGAAAGTGGCTTGGTTGGAAGCCCTGACAATTAGCGAGAGTTTGAAATACCTTCCGAATGTATCTCCTAGAGTGAGGGTGGAATCAGATGCAAGCCAGGTTGTTAGATTGCTCTCCCATAAATAG

mRNA sequence

ATGTTTGCTCTGTTGTCTTCGCACGAGAACGTCGTCGCCGTCGAGCTGGAACCGCGTGTTCGTGAGTTTAGATCCAAGTCCAGATTCGCGCTGCTCGCCGCTGAGTTTGTGAGTTCAGATCCGCGCGCGTTCGCAGTCGAGTTCGTGAGTTCAGATTCGTACCTTGCCGCCGAGTTCCTGAGTTCAGATCCGAACCGTTCGCGCGTCGAGTTCGTGAGTTCTTATTCGCATGTCAGATCTGAGTTCATGAGTTTATATCCGCTCGTCTTCGCAGAAGCTTGTGAGTTCGTGAGTTGTAGCCTTCGCACGAGAACGCCGACAAACGAAAGGAAAGGGAACGCCGTCTTCGCTCAATTAAATGGTTATAAGACAACGAAGGCATCCAGTTCGCGGTCCAATCGCGCGCTAAGGGAAGTAGGGGTGGCGAGCTCTTCGACGCAAATTGTTCACGCAACAGCTCCGATTGCAGCGATCAATATGACAGCAGCGGATGAAGAGTCAGACACATACATGGCAGCGACAGTTATTCATGAAGCGACCCATACGACAGTAACAGACGAAGCCTTCAACCCAAATGCAGCAGTCTCGATCCCAAGGAAGGCTTTGATCTCACCGCCTCAAGGGATTTGGAAGATGAACTGTGACGCTTCGTGGTCAGATGAGCGAAATCTGGGAGGAATCGACTGGATTTTACGCCACTGGTTTGAAACTCCTCTGATGGCAGGATACAAAGTTGTGAAACGTCAGTGGAAAGTGGCTTGGTTGGAAGCCCTGACAATTAGCGAGAGTTTGAAATACCTTCCGAATGTATCTCCTAGAGTGAGGGTGGAATCAGATGCAAGCCAGGTTGTTAGATTGCTCTCCCATAAATAG

Coding sequence (CDS)

ATGTTTGCTCTGTTGTCTTCGCACGAGAACGTCGTCGCCGTCGAGCTGGAACCGCGTGTTCGTGAGTTTAGATCCAAGTCCAGATTCGCGCTGCTCGCCGCTGAGTTTGTGAGTTCAGATCCGCGCGCGTTCGCAGTCGAGTTCGTGAGTTCAGATTCGTACCTTGCCGCCGAGTTCCTGAGTTCAGATCCGAACCGTTCGCGCGTCGAGTTCGTGAGTTCTTATTCGCATGTCAGATCTGAGTTCATGAGTTTATATCCGCTCGTCTTCGCAGAAGCTTGTGAGTTCGTGAGTTGTAGCCTTCGCACGAGAACGCCGACAAACGAAAGGAAAGGGAACGCCGTCTTCGCTCAATTAAATGGTTATAAGACAACGAAGGCATCCAGTTCGCGGTCCAATCGCGCGCTAAGGGAAGTAGGGGTGGCGAGCTCTTCGACGCAAATTGTTCACGCAACAGCTCCGATTGCAGCGATCAATATGACAGCAGCGGATGAAGAGTCAGACACATACATGGCAGCGACAGTTATTCATGAAGCGACCCATACGACAGTAACAGACGAAGCCTTCAACCCAAATGCAGCAGTCTCGATCCCAAGGAAGGCTTTGATCTCACCGCCTCAAGGGATTTGGAAGATGAACTGTGACGCTTCGTGGTCAGATGAGCGAAATCTGGGAGGAATCGACTGGATTTTACGCCACTGGTTTGAAACTCCTCTGATGGCAGGATACAAAGTTGTGAAACGTCAGTGGAAAGTGGCTTGGTTGGAAGCCCTGACAATTAGCGAGAGTTTGAAATACCTTCCGAATGTATCTCCTAGAGTGAGGGTGGAATCAGATGCAAGCCAGGTTGTTAGATTGCTCTCCCATAAATAG

Protein sequence

MFALLSSHENVVAVELEPRVREFRSKSRFALLAAEFVSSDPRAFAVEFVSSDSYLAAEFLSSDPNRSRVEFVSSYSHVRSEFMSLYPLVFAEACEFVSCSLRTRTPTNERKGNAVFAQLNGYKTTKASSSRSNRALREVGVASSSTQIVHATAPIAAINMTAADEESDTYMAATVIHEATHTTVTDEAFNPNAAVSIPRKALISPPQGIWKMNCDASWSDERNLGGIDWILRHWFETPLMAGYKVVKRQWKVAWLEALTISESLKYLPNVSPRVRVESDASQVVRLLSHK
Homology
[Close]
BLAST of Spg036639 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 4.2e-09
Identity = 45/126 (35.71%), Postives = 70/126 (55.56%), Query Frame = 0 

Query: 173 ATVIHEATHTTVTDEAFNPNAAVSIPRKALIS------PPQGIWKMNCDASWSDERNLGG 232
           +T+I + T   VT+ ++    ++S+  K L +      PP  IW +N DASWSD  + GG
Sbjct: 37  STMIQQLT-KFVTESSYQSETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGG 96

Query: 233 IDWILRHWFETPLMAGYKVVKRQWKVAWLEALTISESLKYLPN--VSPRVRVESDASQVV 291
           I WI+R W    ++AG + V+    V  LEA  I E L+ L N  V   + +E+D+++V 
Sbjct: 97  IGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIETDSAEVE 156

[Close]
BLAST of Spg036639 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 6.8e-07
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 0 

Query: 204 SPPQGIWKMNCDASWSDERNLGGIDWILRHWFETPLMAGYKVVKRQWKVAWLEALTISES 263
           +PP   WK+N DASWS+ER +GGI WIL       ++AG   ++ + ++  LE +TI   
Sbjct: 107 APPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRG 166

Query: 264 LKYLPNVSPR--VRVESDASQVVRLL 288
           L+++ N+  R  + +ESD+ +V+RL+
Sbjct: 167 LQFI-NMQSRSPIYLESDSVEVIRLM 191

[Close]
BLAST of Spg036639 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 8.3e-05
Identity = 30/101 (29.70%), Postives = 52/101 (51.49%), Query Frame = 0 

Query: 189 FNPNAAVSIPRKALISPP-QGIWKMNCDASWSDERNLGGIDWILRHWFETPLMAGYKVVK 248
           F+P   +    +A   PP    WK+N DA+W  + N  GI WILR      +  G ++++
Sbjct: 241 FHPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIR 300

Query: 249 RQWKVAWLEALTISESLKYLPNVSPR-VRVESDASQVVRLL 288
            +  + +LE + I E L+ +     R + +ESD+ + + LL
Sbjct: 301 AERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLL 341

[Close]
BLAST of Spg036639 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 8.3e-05
Identity = 30/101 (29.70%), Postives = 52/101 (51.49%), Query Frame = 0 

Query: 189 FNPNAAVSIPRKALISPP-QGIWKMNCDASWSDERNLGGIDWILRHWFETPLMAGYKVVK 248
           F+P   +    +A   PP    WK+N DA+W  + N  GI WILR      +  G ++++
Sbjct: 206 FHPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIR 265

Query: 249 RQWKVAWLEALTISESLKYLPNVSPR-VRVESDASQVVRLL 288
            +  + +LE + I E L+ +     R + +ESD+ + + LL
Sbjct: 266 AERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLL 306

[Close]
BLAST of Spg036639 vs. NCBI nr
Match: CAB4279811.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-04
Identity = 28/83 (33.73%), Postives = 48/83 (57.83%), Query Frame = 0 

Query: 206  PQGIWKMNCDASWSDERNLGGIDWILRHWFETPLMAGYKVVKRQWKVAWLEALTISES-L 265
            P G+ K+NCDA+W  +  +GG+ W++R  +   + AG K   R      +EA  I E+ L
Sbjct: 1063 PYGVLKVNCDAAWVSQTQMGGVGWVVRDSYGWMVQAGCKGDMRGGSALAMEAKAIREALL 1122

Query: 266  KYLPNVSPRVRVESDASQVVRLL 288
              + +   ++ VESD+ Q++R+L
Sbjct: 1123 ACVQSGLSKLEVESDSLQLIRML 1145

[Close]
BLAST of Spg036639 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09
Identity = 45/126 (35.71%), Postives = 70/126 (55.56%), Query Frame = 0 

Query: 173 ATVIHEATHTTVTDEAFNPNAAVSIPRKALIS------PPQGIWKMNCDASWSDERNLGG 232
           +T+I + T   VT+ ++    ++S+  K L +      PP  IW +N DASWSD  + GG
Sbjct: 37  STMIQQLT-KFVTESSYQSETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGG 96

Query: 233 IDWILRHWFETPLMAGYKVVKRQWKVAWLEALTISESLKYLPN--VSPRVRVESDASQVV 291
           I WI+R W    ++AG + V+    V  LEA  I E L+ L N  V   + +E+D+++V 
Sbjct: 97  IGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIETDSAEVE 156

[Close]
BLAST of Spg036639 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-07
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 0 

Query: 204 SPPQGIWKMNCDASWSDERNLGGIDWILRHWFETPLMAGYKVVKRQWKVAWLEALTISES 263
           +PP   WK+N DASWS+ER +GGI WIL       ++AG   ++ + ++  LE +TI   
Sbjct: 107 APPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRG 166

Query: 264 LKYLPNVSPR--VRVESDASQVVRLL 288
           L+++ N+  R  + +ESD+ +V+RL+
Sbjct: 167 LQFI-NMQSRSPIYLESDSVEVIRLM 191

[Close]
BLAST of Spg036639 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-05
Identity = 30/101 (29.70%), Postives = 52/101 (51.49%), Query Frame = 0 

Query: 189 FNPNAAVSIPRKALISPP-QGIWKMNCDASWSDERNLGGIDWILRHWFETPLMAGYKVVK 248
           F+P   +    +A   PP    WK+N DA+W  + N  GI WILR      +  G ++++
Sbjct: 241 FHPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIR 300

Query: 249 RQWKVAWLEALTISESLKYLPNVSPR-VRVESDASQVVRLL 288
            +  + +LE + I E L+ +     R + +ESD+ + + LL
Sbjct: 301 AERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLL 341

[Close]
BLAST of Spg036639 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-05
Identity = 30/101 (29.70%), Postives = 52/101 (51.49%), Query Frame = 0 

Query: 189 FNPNAAVSIPRKALISPP-QGIWKMNCDASWSDERNLGGIDWILRHWFETPLMAGYKVVK 248
           F+P   +    +A   PP    WK+N DA+W  + N  GI WILR      +  G ++++
Sbjct: 206 FHPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIR 265

Query: 249 RQWKVAWLEALTISESLKYLPNVSPR-VRVESDASQVVRLL 288
            +  + +LE + I E L+ +     R + +ESD+ + + LL
Sbjct: 266 AERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLL 306

[Close]
BLAST of Spg036639 vs. ExPASy TrEMBL
Match: A0A6J5UV01 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS32434 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 28/83 (33.73%), Postives = 48/83 (57.83%), Query Frame = 0 

Query: 206  PQGIWKMNCDASWSDERNLGGIDWILRHWFETPLMAGYKVVKRQWKVAWLEALTISES-L 265
            P G+ K+NCDA+W  +  +GG+ W++R  +   + AG K   R      +EA  I E+ L
Sbjct: 1063 PYGVLKVNCDAAWVSQTQMGGVGWVVRDSYGWMVQAGCKGDMRGGSALAMEAKAIREALL 1122

Query: 266  KYLPNVSPRVRVESDASQVVRLL 288
              + +   ++ VESD+ Q++R+L
Sbjct: 1123 ACVQSGLSKLEVESDSLQLIRML 1145

The following BLAST results are available for this feature:
BLAST of Spg036639 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155262.14.2e-0935.71uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022143317.16.8e-0738.37uncharacterized protein LOC111013216 [Momordica charantia][more]
XP_022154990.18.3e-0529.70uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
XP_022154991.18.3e-0529.70uncharacterized protein LOC111022134 isoform X2 [Momordica charantia][more]
CAB4279811.12.4e-0433.73unnamed protein product [Prunus armeniaca][more]
BLAST of Spg036639 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg036639 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DNV92.0e-0935.71uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CQG03.3e-0738.37uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DL644.0e-0529.70uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DQC94.0e-0529.70uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J5UV011.2e-0433.73Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=... [more]
BLAST of Spg036639 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg036639.1Spg036639.1mRNA