Spg036548 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg036548
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonucloprotein
Location	scaffold5: 47313905 .. 47316094 (-)
RNA-Seq Expression	Spg036548
Synteny	Spg036548

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAACAATCTCCGTCGTCGTCAAAACCCCCCTTTTTCTCCGGCGGTTCCATTTTCGATAAAACCTTATCGGAAGCAATGGGGAGTGATAGCGAGGTAGAGAAGTCGCATCAAAAGGACAAAGAGAAGGAGAAGAAGAAGATGCTGGCTCTTGCGCCAATTGCCAAACCCCTTGCCGGCAAGAAGCTCTGCAAGCGCACCCTCAAGCTTGTTCGCAAAGGTATTCGATCTGTTCTCTCTAAACCCAGGCTTCATTCTCTTCATCGCTATTCGAGTCTGGTTTTTTTTGCAATTTTTTTTGTTGGGTTTTGGTTTAGCGAGGATTCTCTAGGTTAGTGGAGGTGTTGTTGATTGTGTGCAGGAAGTTTGAGTTCGAATTAATGTCATTGTTTTCTTTGCCGTTATTCAATGGATTTACTGGTTGAATCTGTAAGTTGCTTGGCCAAGGCTGCCTCATTAATTCAGGCCTGTGTTGATGCTTTTTCTGCAATTCGGAAGTGTCAAATGATTGCCCACCTAAGGAGATTGATTTTGTTTGAATTATTCTTGTTAATATTCATCGTGGCGTCGTTCTTTGTATGACCCATTTTTTGTTCTTTCATTTTATTCCTCGATAATGTGGTTTTTGTATTGAGTATAAAAAAATTGCGTTCTTGTTCTTTCAGCTGCTGAGTACAAGTGCTTGAAGCGGGGGGTAAAGGAGGTTGTCAAAAGCATAAGGCGCGGACAAAAGGGGTAATTTCTGCTATGATTTTTTCTTACTTTTAGCCTTTTATATCATGCTAAAGATAGAACAAATGGAAGGCGTGACTAAAAAATGGACAGAGGAAGGAGGAATTATCGAACCATACCGATATTAATTGTGTCTTTGAGGAGATATTGAGTGACGTATATACATTGTAACAATTTTTAGGACGGATTAAAATTAAAACAAGCGTTTGTGACATTTATACTTCTAATGTAATACCTGAAATCTCTTCTACCGTATTGTATTTTTAATTTTTTTCCCTCTTCCTCTTTCGTTTTGCGCAATGCAGATTATGTGTAATAGCTGGGAATATATCCCCCATTGATGTGATCACTCATGTTCCAATCTTGTGTGAAGAGTCAGAGATTCGCTACGTATACGTCCCCTCCAAGGAAGTAAGTGATCACGCATGTTCTAATCTTTTTGGAATGTTTGCTTTTGTTTGTTTGTTTAGTTGTTGGTTTGATATGCAAAGTAGTTGAGGAAGGAGAGAAGTGATGGCTACATATCTATTCTATTCATTGCTTGTGGATCAATTATTAATGAAATCTTTGTACTCTGTCATTGTTACTGCTTTAACTTGACTATTGATTCAATGTAGAACATTATTAAGTTGAAGTGGTTGCAATTATCAAAGCTAACATTATGTTCCTTATGATCTTTAAAAGTTAACTCAAGCACAATTTGCCATGATTTTCAGTTCCTTGTGATAATAACGATAGGTGATAATCTCTTTGTTCTTCAGGATCTTGCCAATGCAGGGTCGACCAAGAGGCCAACATGTTGTGTGTTGGTGCAGACTAAGCCAAACAAAGGGGAGCTTGGATCAACCGAACAAGAGAAACTCATGGCTGACTTTGACCAAGTTGTAGCAGAAGTATCAGAACTTACAAGCAGTCTTTTCTGAAGGGTAAAGCCATTGTTCTTTAACTTCCTAAATGTACCTGTAGCTTTTTTCTTCAAACTGGTTAGTGTGCTCTGTTTCACTTGAAAATTTATTTGGTCATATGCCATTTCTAGTGCAGCCATCTCCCTTAATATTAAATACGTAGAGAGGTGGCGAACGTTGATGTTTTCTATCTAGTTTAGTCATGTTTGAAACATTCTTAAGTTTCTCAGATTGCATAGAATCCAGTCATTGGATCGATATTCGTTGAAGAAACTCGGTGATTCGATAGAATTTGAATCAATGGTTTTTACATAAAAAAGGGGAAATTTACTTGAACCATTGCTGATGCTGCATCAGTTTTCTATTCAACAAGCAAAGTCTGTCAAATGGACGGTGGACGGTTCATAGCGAGAGGACAGTGTCCGGGGTGTACGGATCTTGCAGTTCCATTAAAGTTCTTTTTGAAGCTTTCGTGTAGAATTCACTTGCTAATTTTCATCGTAGGAGACATCAAATTTCTCTAAAATGATATCTCGAGAAGACTTATCAAGTTT

mRNA sequence

ATGGGGAGTGATAGCGAGGTAGAGAAGTCGCATCAAAAGGACAAAGAGAAGGAGAAGAAGAAGATGCTGGCTCTTGCGCCAATTGCCAAACCCCTTGCCGGCAAGAAGCTCTGCAAGCGCACCCTCAAGCTTGTTCGCAAAGCTGCTGAGTACAAGTGCTTGAAGCGGGGGGTAAAGGAGGTTGTCAAAAGCATAAGGCGCGGACAAAAGGGATTATGTGTAATAGCTGGGAATATATCCCCCATTGATGTGATCACTCATGTTCCAATCTTGTGTGAAGAGTCAGAGATTCGCTACGTATACGTCCCCTCCAAGGAAGATCTTGCCAATGCAGGGTCGACCAAGAGGCCAACATGTTGTGTGTTGGTGCAGACTAAGCCAAACAAAGGGGAGCTTGGATCAACCGAACAAGAGAAACTCATGGCTGACTTTGACCAAGTTGTAGCAGAAGTATCAGAACTTACAAGCAGTCTTTTCTGA

Coding sequence (CDS)

ATGGGGAGTGATAGCGAGGTAGAGAAGTCGCATCAAAAGGACAAAGAGAAGGAGAAGAAGAAGATGCTGGCTCTTGCGCCAATTGCCAAACCCCTTGCCGGCAAGAAGCTCTGCAAGCGCACCCTCAAGCTTGTTCGCAAAGCTGCTGAGTACAAGTGCTTGAAGCGGGGGGTAAAGGAGGTTGTCAAAAGCATAAGGCGCGGACAAAAGGGATTATGTGTAATAGCTGGGAATATATCCCCCATTGATGTGATCACTCATGTTCCAATCTTGTGTGAAGAGTCAGAGATTCGCTACGTATACGTCCCCTCCAAGGAAGATCTTGCCAATGCAGGGTCGACCAAGAGGCCAACATGTTGTGTGTTGGTGCAGACTAAGCCAAACAAAGGGGAGCTTGGATCAACCGAACAAGAGAAACTCATGGCTGACTTTGACCAAGTTGTAGCAGAAGTATCAGAACTTACAAGCAGTCTTTTCTGA

Protein sequence

MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLMADFDQVVAEVSELTSSLF

Homology

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BLAST of Spg036548 vs. NCBI nr
Match: XP_008454886.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo] >TYJ98965.1 H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 294.3 bits (752), Expect = 6.4e-76
Identity = 153/159 (96.23%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSE EKS QKDKEKEKKK+LALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEES+IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLMADFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKL ADFDQVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

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BLAST of Spg036548 vs. NCBI nr
Match: XP_038894923.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Benincasa hispida])

HSP 1 Score: 292.0 bits (746), Expect = 3.2e-75
Identity = 150/159 (94.34%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSE EKSHQKDK+KEKKK+LALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHQKDKKKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEE++IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLMADFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKL AD++QVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADYEQVVAEVSELTSTLF 159

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BLAST of Spg036548 vs. NCBI nr
Match: XP_023541121.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 149/159 (93.71%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSE EKSH KDKEKEKKK+LALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE++IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLMADFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKL A+FDQVVAEVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSVF 159

[Close]

BLAST of Spg036548 vs. NCBI nr
Match: XP_022955313.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata])

HSP 1 Score: 289.3 bits (739), Expect = 2.1e-74
Identity = 148/159 (93.08%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSE EKSH KDKEKEKKK+LALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE++IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLMADFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKL A+FDQVV+EVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 159

[Close]

BLAST of Spg036548 vs. NCBI nr
Match: XP_022994544.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita maxima])

HSP 1 Score: 287.0 bits (733), Expect = 1.0e-73
Identity = 148/159 (93.08%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M SDSE EKSH KDKEKEKKK+LALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MVSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE++IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLMADFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKL A+FDQVVAEVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSIF 159

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BLAST of Spg036548 vs. ExPASy Swiss-Prot
Match: Q9LEY9 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g08180 PE=1 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.2e-54
Identity = 113/158 (71.52%), Postives = 130/158 (82.28%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+E EKS QK+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITH+PILCEE+ + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLMADFDQVVAEVSELTSSL 159
           VLV  KP KG+L + E  KL  D++QV  ++ EL +S+
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

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BLAST of Spg036548 vs. ExPASy Swiss-Prot
Match: P32495 (H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NHP2 PE=1 SV=2)

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-33
Identity = 76/156 (48.72%), Postives = 111/156 (71.15%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDK--EKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGV 60
           MG D++  K  ++ K  +  + +M A+ P AKPLA KKL K+ LK V+KA++ K +KRGV
Sbjct: 1   MGKDNKEHKESKESKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGV 60

Query: 61  KEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPT 120
           KEVVK++R+G+KGL VIAG+ISP DVI+H+P+LCE+  + Y+++PSK+DL  AG+TKRPT
Sbjct: 61  KEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPT 120

Query: 121 CCVLVQTKPNKGELGSTEQEKLMADFDQVVAEVSEL 155
             V +    NK + G  ++E+    F++VV EV  L
Sbjct: 121 SVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156

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BLAST of Spg036548 vs. ExPASy Swiss-Prot
Match: Q9P7H0 (H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nhp2 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-28
Identity = 67/154 (43.51%), Postives = 104/154 (67.53%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M  D +  K     +++    + AL PIAKPLA KKL K+ +K V+KA++ K + RGVKE
Sbjct: 1   MAKDKKDHKHSGSTEDEYDSYLPALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVK++R+G+KGL ++AG+ISP+DVI+H+P+LCE++ + Y+Y  SKE L  A +TKRPT C
Sbjct: 61  VVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSC 120

Query: 121 VLVQTKPNKGELGSTEQEKLMADFDQVVAEVSEL 155
           V++     K ++   E+ K    +++++ EV  L
Sbjct: 121 VMIVPGGKKKDMSKVEEYK--ESYEEIIKEVPAL 152

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BLAST of Spg036548 vs. ExPASy Swiss-Prot
Match: Q8I7X7 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri OX=7741 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23
Identity = 58/152 (38.16%), Postives = 102/152 (67.11%), Query Frame = 0


Query: 4   DSEVEKSHQKDKEKEKKKMLA-LAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVV 63
           + E    +++D+E+  + +   + PIA PLA +KL KR  K V+KA++ K +++G+++V 
Sbjct: 15  EHEESGGNKEDRERAYEVLATRVNPIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQ 74

Query: 64  KSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCCVL 123
           K I++G++G+ +IAG+ +PI+V  H+P++CE+++I Y YVP+K+DL  A  +KRPTCCVL
Sbjct: 75  KFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVL 134

Query: 124 VQTKPNKGELGSTEQEKLMADFDQVVAEVSEL 155
           +  KPN         E   + +D+ + +V+ L
Sbjct: 135 L--KPN---------ESYQSSYDECLTDVTTL 155

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BLAST of Spg036548 vs. ExPASy Swiss-Prot
Match: Q60YI3 (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis briggsae OX=6238 GN=CBG18231 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-23
Identity = 61/141 (43.26%), Postives = 93/141 (65.96%), Query Frame = 0


Query: 16  EKEKKKMLA--LAPIAKPLAGKKLCKRTLKLVRKAAE-YKCLKRGVKEVVKSIRRGQKGL 75
           EK++ + L   + PIA+PLA +KL K+  KL++KAA   K L+ G+K+V K +R+ +KG+
Sbjct: 28  EKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKAAAGEKTLREGIKDVQKELRKNEKGI 87

Query: 76  CVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGEL 135
           C++AGN+SPIDV +H+P +CEE EI YVY+PS+E L  A   +RP+  +L+  KP+    
Sbjct: 88  CILAGNVSPIDVYSHIPAICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS---- 147

Query: 136 GSTEQEKLMADFDQVVAEVSE 154
                    ADF ++  EV+E
Sbjct: 148 ---------ADFQELYDEVAE 153

[Close]

BLAST of Spg036548 vs. ExPASy TrEMBL
Match: A0A5D3BKS6 (Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001680 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.1e-76
Identity = 153/159 (96.23%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSE EKS QKDKEKEKKK+LALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEES+IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLMADFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKL ADFDQVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

[Close]

BLAST of Spg036548 vs. ExPASy TrEMBL
Match: A0A1S3C0C8 (Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.1e-76
Identity = 153/159 (96.23%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSE EKS QKDKEKEKKK+LALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEES+IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLMADFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKL ADFDQVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

[Close]

BLAST of Spg036548 vs. ExPASy TrEMBL
Match: A0A6J1GTK9 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.0e-74
Identity = 148/159 (93.08%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSE EKSH KDKEKEKKK+LALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE++IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLMADFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKL A+FDQVV+EVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 159

[Close]

BLAST of Spg036548 vs. ExPASy TrEMBL
Match: A0A6J1K350 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111490234 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.9e-74
Identity = 148/159 (93.08%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M SDSE EKSH KDKEKEKKK+LALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MVSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE++IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLMADFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKL A+FDQVVAEVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSIF 159

[Close]

BLAST of Spg036548 vs. ExPASy TrEMBL
Match: A0A0A0LVP3 (Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_1G041530 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.5e-74
Identity = 152/159 (95.60%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSE EKS  KDKEKE KK+LALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRLKDKEKE-KKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLMADFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKL ADFDQVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 158

[Close]

BLAST of Spg036548 vs. TAIR 10
Match: AT5G08180.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 212.2 bits (539), Expect = 3.0e-55
Identity = 113/158 (71.52%), Postives = 130/158 (82.28%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+E EKS QK+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITH+PILCEE+ + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLMADFDQVVAEVSELTSSL 159
           VLV  KP KG+L + E  KL  D++QV  ++ EL +S+
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

[Close]

BLAST of Spg036548 vs. TAIR 10
Match: AT5G08180.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 212.2 bits (539), Expect = 3.0e-55
Identity = 113/158 (71.52%), Postives = 130/158 (82.28%), Query Frame = 0


Query: 1   MGSDSEVEKSHQKDKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+E EKS QK+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITH+PILCEE+ + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLMADFDQVVAEVSELTSSL 159
           VLV  KP KG+L + E  KL  D++QV  ++ EL +S+
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

[Close]

BLAST of Spg036548 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 71.6 bits (174), Expect = 6.3e-13
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 86
           P A PLA  +L    L LV++A  YK LK+G  E  K++ RG     V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILL 67

Query: 87  HVPILCEESEIRYVYVPSKEDLANAGSTKRP 118
           H+P+L E+  + YV+VPSK+ L  A    RP
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACDVTRP 98

[Close]

BLAST of Spg036548 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 71.6 bits (174), Expect = 6.3e-13
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 86
           P A PLA  +L    L LV++A  YK LK+G  E  K++ RG     V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILL 67

Query: 87  HVPILCEESEIRYVYVPSKEDLANAGSTKRP 118
           H+P+L E+  + YV+VPSK+ L  A    RP
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACGVTRP 98

[Close]

BLAST of Spg036548 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 86
           P A PLA  +L    + LV++A  YK LK+G  E  K++ RG     V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILL 67

Query: 87  HVPILCEESEIRYVYVPSKEDLANAGSTKRP 118
           H+P+L E+  + YV+VPSK+ L  A    RP
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACGVTRP 98

The following BLAST results are available for this feature:

BLAST of Spg036548 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454886.1	6.4e-76	96.23	PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo]...	[more]
XP_038894923.1	3.2e-75	94.34	H/ACA ribonucleoprotein complex subunit 2-like protein [Benincasa hispida]	[more]
XP_023541121.1	1.2e-74	93.71	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pe...	[more]
XP_022955313.1	2.1e-74	93.08	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata]	[more]
XP_022994544.1	1.0e-73	93.08	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita maxima]	[more]

BLAST of Spg036548 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LEY9	4.2e-54	71.52	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana O...	[more]
P32495	1.1e-33	48.72	H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain...	[more]
Q9P7H0	1.0e-28	43.51	H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strai...	[more]
Q8I7X7	1.3e-23	38.16	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri...	[more]
Q60YI3	3.8e-23	43.26	Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditi...	[more]

BLAST of Spg036548 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BKS6	3.1e-76	96.23	Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001...	[more]
A0A1S3C0C8	3.1e-76	96.23	Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1	[more]
A0A6J1GTK9	1.0e-74	93.08	Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1	[more]
A0A6J1K350	4.9e-74	93.08	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111490234 PE=3 SV=1	[more]
A0A0A0LVP3	6.5e-74	95.60	Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_1G041530 PE=3 SV=1	[more]

BLAST of Spg036548 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08180.1	3.0e-55	71.52	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G08180.2	3.0e-55	71.52	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	6.3e-13	39.56	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.1	6.3e-13	39.56	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	1.1e-12	38.46	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 89..99 score: 44.63 coord: 54..68 score: 36.97 coord: 73..86 score: 29.87 coord: 99..113 score: 36.06
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 101..113 score: 43.08 coord: 40..55 score: 41.25 coord: 57..67 score: 43.64 coord: 27..40 score: 50.0
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 42..126 e-value: 1.3E-23 score: 82.5
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 19..154 e-value: 7.4E-49 score: 166.6
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 20..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR23105:SF146	SUBFAMILY NOT NAMED	coord: 2..158
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 2..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg036548.1	Spg036548.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000469	cleavage involved in rRNA processing
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0034513	box H/ACA snoRNA binding
molecular_function	GO:0003723	RNA binding