Spg036447 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg036447
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold5: 44692551 .. 44692772 (+)
RNA-Seq ExpressionSpg036447
SyntenySpg036447
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGAGATGGGCATAACTGATCTCAAATCGTCATTAGAGACATTGTTAAAAGATCATAGTAAAGATGAAGATAAACAATTGAGGGACAATATTGTCGATGTGTATGACATGATTGAGACTTGTGAATTTGACTTTGAGGGTTATGTAGCAGAACCAGCTTCTTGGTTGGCTCATTATCTTCGCTTGCGTCCACTTACTGAAAATCTCCTCATCCAATAG

mRNA sequence

ATGTATGAGATGGGCATAACTGATCTCAAATCGTCATTAGAGACATTGTTAAAAGATCATAGTAAAGATGAAGATAAACAATTGAGGGACAATATTGTCGATGTGTATGACATGATTGAGACTTGTGAATTTGACTTTGAGGGTTATGTAGCAGAACCAGCTTCTTGGTTGGCTCATTATCTTCGCTTGCGTCCACTTACTGAAAATCTCCTCATCCAATAG

Coding sequence (CDS)

ATGTATGAGATGGGCATAACTGATCTCAAATCGTCATTAGAGACATTGTTAAAAGATCATAGTAAAGATGAAGATAAACAATTGAGGGACAATATTGTCGATGTGTATGACATGATTGAGACTTGTGAATTTGACTTTGAGGGTTATGTAGCAGAACCAGCTTCTTGGTTGGCTCATTATCTTCGCTTGCGTCCACTTACTGAAAATCTCCTCATCCAATAG

Protein sequence

MYEMGITDLKSSLETLLKDHSKDEDKQLRDNIVDVYDMIETCEFDFEGYVAEPASWLAHYLRLRPLTENLLIQ
Homology
BLAST of Spg036447 vs. NCBI nr
Match: XP_038895889.1 (putative pectinesterase/pectinesterase inhibitor 22 [Benincasa hispida])

HSP 1 Score: 73.9 bits (180), Expect = 6.2e-10
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 0

Query: 2   YEMGITDLKSSLETLLKDHSKDEDKQLRDNIVDVYDMIETCEFDFEGYVAEPASWLAHYL 61
           YE  I  LKSSLE LLK+H  D DK + +N+ D +  I++CE+DFE +V EP +WLA YL
Sbjct: 228 YEFAIALLKSSLEELLKNH--DRDKVMINNMSDAFGSIDSCEYDFEDFVTEPPAWLARYL 287

Query: 62  RLRPL 67
            LRPL
Sbjct: 288 TLRPL 290

BLAST of Spg036447 vs. NCBI nr
Match: XP_022137307.1 (uncharacterized protein LOC111008804 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 34/65 (52.31%), Postives = 38/65 (58.46%), Query Frame = 0

Query: 2   YEMGITDLKSSLETLLKDHSKDEDKQLRDNIVDVYDMIETCEFDFEGYVAEPASWLAHYL 61
           YE G+  LKSSLE LLK+   D    L   + D +D I  CE DFE    EP SWLAHYL
Sbjct: 91  YERGLDILKSSLEALLKNDKDD----LGLILSDAFDKIVACEDDFES-TPEPPSWLAHYL 150

Query: 62  RLRPL 67
            LR L
Sbjct: 151 PLRKL 150

BLAST of Spg036447 vs. ExPASy TrEMBL
Match: A0A6J1C7W5 (uncharacterized protein LOC111008804 OS=Momordica charantia OX=3673 GN=LOC111008804 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.5e-05
Identity = 34/65 (52.31%), Postives = 38/65 (58.46%), Query Frame = 0

Query: 2   YEMGITDLKSSLETLLKDHSKDEDKQLRDNIVDVYDMIETCEFDFEGYVAEPASWLAHYL 61
           YE G+  LKSSLE LLK+   D    L   + D +D I  CE DFE    EP SWLAHYL
Sbjct: 91  YERGLDILKSSLEALLKNDKDD----LGLILSDAFDKIVACEDDFES-TPEPPSWLAHYL 150

Query: 62  RLRPL 67
            LR L
Sbjct: 151 PLRKL 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895889.16.2e-1055.38putative pectinesterase/pectinesterase inhibitor 22 [Benincasa hispida][more]
XP_022137307.11.8e-0452.31uncharacterized protein LOC111008804 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C7W58.5e-0552.31uncharacterized protein LOC111008804 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg036447.1Spg036447.1mRNA