Spg036318 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg036318
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	major pollen allergen Ole e 6-like
Location	scaffold5: 44954372 .. 44957114 (+)
RNA-Seq Expression	Spg036318
Synteny	Spg036318

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTCTTCAAACAGTCATCCACTCGCAAAGGAAAAGGTATAGGGAGGCGCAAAATCTGAAAAGATTTAAAAGCGTCGCCAAAAGGCAAGATAAAAGAAAATGGCCAAGAAGATGATTGCTGTGTTCTTGATGTGCATTGTGGTGGTGGCTGCATTGCAGAATAATGTCAATGCCGACGACAAAGAGACTAAATGGGAGGTTGAATATGAGGCTAAATTTGACGCCAAGTACAAGTCTTGCTACAAAAATTGCGAGAAGGAATGTCTCGAACATGGCAGTGACCAAAGCTTCTGTGAAGTTAAGTGTGACGAAGATTGTAACGAAAAGGAAGCTGCTGGTACTCTCTCTTCTTCTAACTTTTTTCAACGTCATTAGGTGTCCTGTTTGATATTTTCTACCAATTTTCCTACCGTGGTTTTCATATTTGTCAATGACATATTTGAATTCCTAGTCAAATTCTAAAAGCAAAAACGAAGTTTATGAAAACTATTTTTTTTAGTTTTCAAAATTTGCTTCCTTTTTTAAAAACAAGGAAAGGAAGGTATTAGAAAAAAAAAAATTAGGTGGAAGTAGGATTCATAAGCTTAATTTTCAAAAACCAAATGGTTATTAAACGAGACCTGAAATATTCTGACATTGTCACAAAATTGTCCATAGATCTCCGCATTTTCAAAGCACTTTTGAGAATGAAAGAAGGAATGGTTGTTGACCTTTATATCGATTTTTTTTTTTTTTAATTGTTGTCTCATATTAATTTAAATTATTGTATTTGTTTTACAGATAAGCTAAAGATCGACTTGGCCCATTGAACAATGGAGAACAAAAGAAAAACGAGCTCTTGAGAAGGATCTCTAGTAGTAATTGTATTTAAATCATGTTTGTGAGATCATTTCTCCTTTTTAATTTGGATCAGTTCTCTTTGGTGTCATATCGATATGTAAATCGACCATTTTCATGGTGTTATTTTTATTTATTCTAAAAGAAAAAAAATTATGATTTCCCCGACATTGTTGATTAACACTTACCTGGTTAAGGAGTGGTAAAAAAATTATTCGCCTTTTATGCAACAACAATAATATCCTAAATAATTCTTTGGTGTTATCAGCATGTATCCTCGAACAAAAGGTCAAAGTTTGAACCGTCACCTCCAAATGTTGTTATTTAAAATTTAAAAAAAAAAAACAAAAACAAACAAACAAACTCAAATAAAAAAGAGTAATTTCTCACATAAGTTACATGAAGGATAAGTCTATTTGCAATATGCACTTGGCAAATATATATATGTACAACAATCTTGTCTCCAATTCTTTTTCTAAATAATTATTATTTAATTTATTTTTTATTTCTATTATTAACTTTTTGGGGAAAAAAAATTAGTTTTCCGTGACTAAATCAATTTTCAAAACGGTTAATTTTATCGAATTGAATTTAAACTAAAATTAATTTGAAAATTTGCACATAAAACTCAACCAATAAAAAAAAAACTTAAGTTTGTAAGTAGAACTATCAAATTTAAAAATGATCTTAATCAAAATATCAAAACTTAATTAATAACTCTTGATATTTATTAGAATTTTGTATAAAAGAAAAGGAACATGGTTGAATATTGAAAAGATAAAAATGGATAGATATTATATGAAGGACGAATTTTAGGAGATGTTTTTTAATACGTGTTTGACGTAAAGCATATATCGAATACTTTTCGTTTATACCTACAATAGAGTAAATCACTTATAAATTAAAGTAATTCATGATTTCAGACAAGGCCATTTTGTAATTCCATAAAAAAAAAATACTAGACTTGTCCAAAGGCAAAAGTTTGAAAATTTTAAGACCGAACCCATAGATAATTAAAGACATAACTATAACACATACGAAATTTTCTTAGTCATTTTTATATTGTAATTGGATATTGATAGTTAAAATTCTTTAGATAGATTACATATTAAAATTCTGATGTGTTCATTTCTAGCTAGTTTTTTTTTTAGGTGGTGGATTTAAGTTGACTAAATATTGTTTATTCTTTTAGAAACATGTTTCAAAAATGGTTCCTAAAGTGTTTTATACACAATTATTATATACTTAAAAACTCTTTCTAAAAATTTTGCTAGTATTTCTCTTAAAAATAGTTTATTTCTTCATCTCATTTTTTAATAAGTTATTTTTAGTGGTTGTCAAACACTATACTTTTTTTTTCTAAATGATTTTCTTTTTCAAAATTAAACAATTGAAAAGTTAAACCAAATGCGGAATTGTCCAATTACTTTTTGTGTTTTTTTTTTTTTTGATCCGTTTATGTTATGATGCTTAAGAACAATTCCCCTCGTAAGAAATAGAATCAATTGTTTTTTTGTTTCTTTTAACTAAAATTACATTAGTTACCTTTCACAATTTTTCAAATGAAGAGTACTTTTTATTGATGGAAAATTGATATATATATATATATATATATATATATATATATATATATTTAGACTTACCAGTTTCCAACCAAAGGGCTAAAATTCCCTTCGCTTACTCATGACCAAAAGTCAATAGATTATAAGTTTTAAACTTAAAATACTCATTGGAAGGGAAAGCCATGATTGAAAATTTGGAAGGGAAAGCCATGATCGAAGGGTTGAAGGCTTACCTATCTCATCCCAAGATAAAGGGGAGCAGAGTCAAAGTCCCCCTCGAGGTTGAAAGCGACTCTTTGGAGTTCGTGGAGGCGATTTTCGGGCATTCAGCTGATATCTCCTAA

mRNA sequence

ATGGCCAAGAAGATGATTGCTGTGTTCTTGATGTGCATTGTGGTGGTGGCTGCATTGCAGAATAATGTCAATGCCGACGACAAAGAGACTAAATGGGAGGTTGAATATGAGGCTAAATTTGACGCCAAGTACAAGTCTTGCTACAAAAATTGCGAGAAGGAATGTCTCGAACATGGCAGTGACCAAAGCTTCTGTGAAGTTAAGTGTGACGAAGATTGTAACGAAAAGGAAGCTGCTGGGAAAGCCATGATTGAAAATTTGGAAGGGAAAGCCATGATCGAAGGGTTGAAGGCTTACCTATCTCATCCCAAGATAAAGGGGAGCAGAGTCAAAGTCCCCCTCGAGGTTGAAAGCGACTCTTTGGAGTTCGTGGAGGCGATTTTCGGGCATTCAGCTGATATCTCCTAA

Coding sequence (CDS)

ATGGCCAAGAAGATGATTGCTGTGTTCTTGATGTGCATTGTGGTGGTGGCTGCATTGCAGAATAATGTCAATGCCGACGACAAAGAGACTAAATGGGAGGTTGAATATGAGGCTAAATTTGACGCCAAGTACAAGTCTTGCTACAAAAATTGCGAGAAGGAATGTCTCGAACATGGCAGTGACCAAAGCTTCTGTGAAGTTAAGTGTGACGAAGATTGTAACGAAAAGGAAGCTGCTGGGAAAGCCATGATTGAAAATTTGGAAGGGAAAGCCATGATCGAAGGGTTGAAGGCTTACCTATCTCATCCCAAGATAAAGGGGAGCAGAGTCAAAGTCCCCCTCGAGGTTGAAAGCGACTCTTTGGAGTTCGTGGAGGCGATTTTCGGGCATTCAGCTGATATCTCCTAA

Protein sequence

MAKKMIAVFLMCIVVVAALQNNVNADDKETKWEVEYEAKFDAKYKSCYKNCEKECLEHGSDQSFCEVKCDEDCNEKEAAGKAMIENLEGKAMIEGLKAYLSHPKIKGSRVKVPLEVESDSLEFVEAIFGHSADIS

Homology

[Close]

BLAST of Spg036318 vs. NCBI nr
Match: XP_008456958.1 (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo] >KAA0066995.1 major pollen allergen Ole e 6-like [Cucumis melo var. makuwa] >TYJ96804.1 major pollen allergen Ole e 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-22
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 1  MAKKMIAVFLMCIVVVAALQ-NNVNADDKETKWEVEYEAKFDAKYKSCYKNCEKECLEHG 60
          MAKKMIA+FLMCIVVVAALQ  + N +D+  K    YEAKFDAKYKSC+K CEKECLE+G
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAK----YEAKFDAKYKSCFKTCEKECLENG 60

Query: 61 SDQSFCEVKCDEDCNEKEAAGKAMIE 86
          S QS+CEVKCDEDCNEKE A K  IE
Sbjct: 61 SGQSYCEVKCDEDCNEKEVADKLHIE 82

[Close]

BLAST of Spg036318 vs. NCBI nr
Match: XP_038891517.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-21
Identity = 61/85 (71.76%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1  MAKKMIAVFLMCIVVVAALQNNVNADDKETKWEVEYEAKFDAKYKSCYKNCEKECLEHGS 60
          MAKKM+AVFLMCIVVVAALQ     +D+ TK    YEAKFDAKYKSCY+ CEKECL +GS
Sbjct: 1  MAKKMMAVFLMCIVVVAALQFATANEDEVTK----YEAKFDAKYKSCYETCEKECLANGS 60

Query: 61 DQSFCEVKCDEDCNEKEAAGKAMIE 86
           QSFCEVKCDEDC+EKE A K  I+
Sbjct: 61 GQSFCEVKCDEDCDEKEVADKLHIK 81

[Close]

BLAST of Spg036318 vs. NCBI nr
Match: XP_004146471.1 (major pollen allergen Ole e 6 [Cucumis sativus] >KGN50739.1 hypothetical protein Csa_005859 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 8.5e-21
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MAKKMIAVFLMCIVVVAALQ-NNVNADDKETKWEVEYEAKFDAKYKSCYKNCEKECLEHG 60
          MA KMIA+FLMCIVVVAALQ  N N +D       +YEAKFDAKYKSC++ CEKECL +G
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKED-----VAKYEAKFDAKYKSCFETCEKECLRYG 60

Query: 61 SDQSFCEVKCDEDCNEKEAAGKAMIE 86
          S QS+CEVKCDEDC+EKEAA K  IE
Sbjct: 61 SGQSYCEVKCDEDCDEKEAADKLHIE 81

[Close]

BLAST of Spg036318 vs. NCBI nr
Match: XP_038875643.1 (major pollen allergen Ole e 6-like [Benincasa hispida] >XP_038906512.1 major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 109.4 bits (272), Expect = 2.5e-20
Identity = 58/85 (68.24%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MAKKMIAVFLMCIVVVAALQNNVNADDKETKWEVEYEAKFDAKYKSCYKNCEKECLEHGS 60
          MAKKMIAVF MCIVV+AALQ     ++ +     +YEAKFDAKYKSCY+ CEKECLE+GS
Sbjct: 1  MAKKMIAVFFMCIVVMAALQFATANEEVD-----KYEAKFDAKYKSCYETCEKECLENGS 60

Query: 61 DQSFCEVKCDEDCNEKEAAGKAMIE 86
           Q+FCEVKCDEDC+EKE A K  IE
Sbjct: 61 GQTFCEVKCDEDCDEKEKADKLHIE 80

[Close]

BLAST of Spg036318 vs. NCBI nr
Match: XP_038906682.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 109.4 bits (272), Expect = 2.5e-20
Identity = 60/85 (70.59%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1  MAKKMIAVFLMCIVVVAALQNNVNADDKETKWEVEYEAKFDAKYKSCYKNCEKECLEHGS 60
          MAKKMIAVFLMCIVV+AALQ    A+++  K    YEAKFDAKYKSCY+ CEKECLE G+
Sbjct: 1  MAKKMIAVFLMCIVVMAALQ-FTTANEEVAK----YEAKFDAKYKSCYETCEKECLEKGN 60

Query: 61 DQSFCEVKCDEDCNEKEAAGKAMIE 86
           QSFCEVKCDEDC+EKE A K  I+
Sbjct: 61 GQSFCEVKCDEDCDEKETADKLHIK 80

[Close]

BLAST of Spg036318 vs. ExPASy Swiss-Prot
Match: O24172 (Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.0e-05
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 41 DAKYKSCYKNCEKECLEHGSDQSFCEVKCDEDCNEKEAAGKAMIENLEGK 91
          +A++K CY  C KEC + G+  +FCE+KCD DC+ K+   K  +EN + K
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDV--KEKLENYKPK 49

[Close]

BLAST of Spg036318 vs. ExPASy TrEMBL
Match: A0A5D3BCS2 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00230 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.8e-23
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 1  MAKKMIAVFLMCIVVVAALQ-NNVNADDKETKWEVEYEAKFDAKYKSCYKNCEKECLEHG 60
          MAKKMIA+FLMCIVVVAALQ  + N +D+  K    YEAKFDAKYKSC+K CEKECLE+G
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAK----YEAKFDAKYKSCFKTCEKECLENG 60

Query: 61 SDQSFCEVKCDEDCNEKEAAGKAMIE 86
          S QS+CEVKCDEDCNEKE A K  IE
Sbjct: 61 SGQSYCEVKCDEDCNEKEVADKLHIE 82

[Close]

BLAST of Spg036318 vs. ExPASy TrEMBL
Match: A0A1S3C530 (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.8e-23
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 1  MAKKMIAVFLMCIVVVAALQ-NNVNADDKETKWEVEYEAKFDAKYKSCYKNCEKECLEHG 60
          MAKKMIA+FLMCIVVVAALQ  + N +D+  K    YEAKFDAKYKSC+K CEKECLE+G
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAK----YEAKFDAKYKSCFKTCEKECLENG 60

Query: 61 SDQSFCEVKCDEDCNEKEAAGKAMIE 86
          S QS+CEVKCDEDCNEKE A K  IE
Sbjct: 61 SGQSYCEVKCDEDCNEKEVADKLHIE 82

[Close]

BLAST of Spg036318 vs. ExPASy TrEMBL
Match: A0A0A0KPA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.1e-21
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MAKKMIAVFLMCIVVVAALQ-NNVNADDKETKWEVEYEAKFDAKYKSCYKNCEKECLEHG 60
          MA KMIA+FLMCIVVVAALQ  N N +D       +YEAKFDAKYKSC++ CEKECL +G
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKED-----VAKYEAKFDAKYKSCFETCEKECLRYG 60

Query: 61 SDQSFCEVKCDEDCNEKEAAGKAMIE 86
          S QS+CEVKCDEDC+EKEAA K  IE
Sbjct: 61 SGQSYCEVKCDEDCDEKEAADKLHIE 81

[Close]

BLAST of Spg036318 vs. ExPASy TrEMBL
Match: A0A5A7TDR1 (Carotenoid cleavage dioxygenase 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002630 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.0e-20
Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MAKKMIAVFLMCIVVVAALQNNVNADDKETKWEVEYEAKFDAKYKSCYKNCEKECLEHGS 60
          MAKKM+AVFLMCIV+VA LQ  +  ++ E     +YEAKFDAKYKSCY+ CEKECL+ G+
Sbjct: 1  MAKKMMAVFLMCIVLVATLQFAIAKEEDEV---TKYEAKFDAKYKSCYETCEKECLQKGN 60

Query: 61 D-QSFCEVKCDEDCNEKEAAG 81
          + QSFCEVKCDEDC+EKEAAG
Sbjct: 61 NGQSFCEVKCDEDCSEKEAAG 78

[Close]

BLAST of Spg036318 vs. ExPASy TrEMBL
Match: A0A6J1EQ21 (major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1  MAKKMIAVFLMCIVVVAALQNNVNADDKETKWEVEYEAKFDAKYKSCYKNCEKECLEHGS 60
          MAKKMIAV L+CIVVVAALQ  V++  +  K E +YEAKF+AKY+ CY+ CEKECLE G+
Sbjct: 1  MAKKMIAVLLVCIVVVAALQ--VSSATESAK-EAKYEAKFEAKYRLCYEKCEKECLEKGN 60

Query: 61 DQSFCEVKCDEDCNEKEAAGKAMIE 86
           QSFCEVKCDEDC EKEAA K  I+
Sbjct: 61 GQSFCEVKCDEDCGEKEAADKLHIK 82

The following BLAST results are available for this feature:

BLAST of Spg036318 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456958.1	1.2e-22	73.26	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo] >KAA0066995.1 major...	[more]
XP_038891517.1	1.0e-21	71.76	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]
XP_004146471.1	8.5e-21	69.77	major pollen allergen Ole e 6 [Cucumis sativus] >KGN50739.1 hypothetical protein...	[more]
XP_038875643.1	2.5e-20	68.24	major pollen allergen Ole e 6-like [Benincasa hispida] >XP_038906512.1 major pol...	[more]
XP_038906682.1	2.5e-20	70.59	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]

BLAST of Spg036318 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24172	4.0e-05	44.00	Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1	[more]

BLAST of Spg036318 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCS2	5.8e-23	73.26	Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C530	5.8e-23	73.26	major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 ...	[more]
A0A0A0KPA7	4.1e-21	69.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222980 PE=4 SV=1	[more]
A0A5A7TDR1	6.0e-20	69.14	Carotenoid cleavage dioxygenase 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1EQ21	1.3e-19	68.24	major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354...	[more]

BLAST of Spg036318 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	1.10.287.720	Pollen allergen ole e 6	coord: 41..87 e-value: 2.8E-13 score: 51.2
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	111388	Pollen allergen ole e 6	coord: 41..88
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole_e_6	coord: 47..81 e-value: 8.6E-11 score: 41.6
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	MAJOR POLLEN ALLERGEN OLE E 6-LIKE	coord: 1..85
None	No IPR available	PANTHER	PTHR35632:SF5	SUBFAMILY NOT NAMED	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg036318.1	Spg036318.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016121	carotene catabolic process
biological_process	GO:0009733	response to auxin
biological_process	GO:0010223	secondary shoot formation
biological_process	GO:1901601	strigolactone biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen