Spg036117 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg036117
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionANK_REP_REGION domain-containing protein
Locationscaffold5: 43515433 .. 43516444 (+)
RNA-Seq ExpressionSpg036117
SyntenySpg036117
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACTTACAAAGCGCAATTCGCAACAACGACTTTAACTGCCAACGACGAGGCTCTTCCCATCATCTTGGGGATTCGATCAGAGAGGATGGCTTGAATCTCAGTGAAGGCACAGAAATTGGGCATGGCTTCCAAAATCAACCTCAGAATCCATGTATTGGTATCGACTAGCTTAAAATTTTACTATCTTGGTCTTTTTTTCCTAGACTCAACAGAGTGATAATGTAGTTTACTTGGTTTAATTATGTTATGCTTGACGTGGTGTATGTATGTGTAATGTTCAGGTCAACCAACAACGGATGAGCATTCAGTTCACAATCTCCTGTATCTGGCAGCACTCACAGGTAACTGGCGCAAAGCGAAATCTTTGATCGATGCACATCCATGGGATATACATGTTGAACTAAACTATCGAAAGGAGACAGCTCTTCACATTGCTGTTATAGCACAACGGACAAGTTTTGTTGAGAAGTTGGTGAAAAGAATGGCGCCAGACGACTTGGCACGGCCAACCATAAGTGGTTATAGGGCCCTTTTGTTTTGCTGCTATGTCAGGAATTGTAAGAATGGCTGATCAGGTCCTAGTGGAAAGGAATCCCGACCTACCATTTTTGAGTGGCTGTAATGGTTCAGTCCCAATTTATCTTGCAGTATTGTACAAACACAAAAATATGGCCTACTATCTCCTCTCCGTGACTGATTTAGCCAGATTAAAGATTCAGGAAAGAATTGACCGTTTTCATGCTACCATCTCCTCTGATTATTACGGTTAATATGTCTCATCTCTTTACTCTTTTTGTAATCTTGGTTTGACCAAACATACACACGCTTAATTGGATATCATGTAAATGAATTATGATTTCTTTTCTCAACAGATATTGGATTGGAGATTCTCCAAAGAAACCCCAATTTAGCATTGAAAAGGAGTAGATTTAACGGTGAGACGGCATTACATATACTAGCGCAAAAGCCATATGCAATGATGCAATTGGTAGCCGAGAGCAGCTAG

mRNA sequence

ATGGAAAACTTACAAAGCGCAATTCGCAACAACGACTTTAACTGCCAACGACGAGGCTCTTCCCATCATCTTGGGGATTCGATCAGAGAGGATGGCTTGAATCTCAGTGAAGGCACAGAAATTGGGCATGGCTTCCAAAATCAACCTCAGAATCCATGTATTGGTCAACCAACAACGGATGAGCATTCAGTTCACAATCTCCTGTATCTGGCAGCACTCACAGGTAACTGGCGCAAAGCGAAATCTTTGATCGATGCACATCCATGGGATATACATGTTGAACTAAACTATCGAAAGGAGACAGCTCTTCACATTGCTGTTATAGCACAACGGACAAGTTTTGTTGAGAAGTTGGTGAAAAGAATGGCGCCAGACGACTTGGCACGGCCAACCATAAGTGGTTATAGGGCCCTTTTGTTTTGCTGCTATGTCAGGAATTATATTGGATTGGAGATTCTCCAAAGAAACCCCAATTTAGCATTGAAAAGGAGTAGATTTAACGGTGAGACGGCATTACATATACTAGCGCAAAAGCCATATGCAATGATGCAATTGGTAGCCGAGAGCAGCTAG

Coding sequence (CDS)

ATGGAAAACTTACAAAGCGCAATTCGCAACAACGACTTTAACTGCCAACGACGAGGCTCTTCCCATCATCTTGGGGATTCGATCAGAGAGGATGGCTTGAATCTCAGTGAAGGCACAGAAATTGGGCATGGCTTCCAAAATCAACCTCAGAATCCATGTATTGGTCAACCAACAACGGATGAGCATTCAGTTCACAATCTCCTGTATCTGGCAGCACTCACAGGTAACTGGCGCAAAGCGAAATCTTTGATCGATGCACATCCATGGGATATACATGTTGAACTAAACTATCGAAAGGAGACAGCTCTTCACATTGCTGTTATAGCACAACGGACAAGTTTTGTTGAGAAGTTGGTGAAAAGAATGGCGCCAGACGACTTGGCACGGCCAACCATAAGTGGTTATAGGGCCCTTTTGTTTTGCTGCTATGTCAGGAATTATATTGGATTGGAGATTCTCCAAAGAAACCCCAATTTAGCATTGAAAAGGAGTAGATTTAACGGTGAGACGGCATTACATATACTAGCGCAAAAGCCATATGCAATGATGCAATTGGTAGCCGAGAGCAGCTAG

Protein sequence

MENLQSAIRNNDFNCQRRGSSHHLGDSIREDGLNLSEGTEIGHGFQNQPQNPCIGQPTTDEHSVHNLLYLAALTGNWRKAKSLIDAHPWDIHVELNYRKETALHIAVIAQRTSFVEKLVKRMAPDDLARPTISGYRALLFCCYVRNYIGLEILQRNPNLALKRSRFNGETALHILAQKPYAMMQLVAESS
Homology
BLAST of Spg036117 vs. NCBI nr
Match: XP_022137352.1 (uncharacterized protein LOC111008827 isoform X2 [Momordica charantia])

HSP 1 Score: 91.7 bits (226), Expect = 7.5e-15
Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = 0

Query: 59  TDEHSVHNLLYLAALTGNWRKAKSLIDAHPWDIHVELNYRKETALHIAVIAQRTSFVEKL 118
           T + S +  LY AA+ G+W+ AKS+ID     + +++N   +TALHIAV  +  SFVE L
Sbjct: 107 TKKKSGNVRLYQAAINGDWKTAKSIIDKDSSALTMKINDEGDTALHIAVAKKHISFVENL 166

Query: 119 VKRMAPDDLARPTISGYRALLFCCYVRNYIGLEILQRNPNLALKRSRFNGETALHILAQK 178
           V+ ++  DL      G  AL       + I L+I+++ P LAL+R + NG+TALH+ A+K
Sbjct: 167 VQLISSSDLTVKNEKGNTALAIAS--ASDIALDIMKKKPELALERRKENGDTALHVFARK 226

Query: 179 PYAM 183
           P A+
Sbjct: 227 PSAI 228

BLAST of Spg036117 vs. NCBI nr
Match: CBI30987.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-13
Identity = 51/133 (38.35%), Postives = 71/133 (53.38%), Query Frame = 0

Query: 68  LYLAALTGNWRKAKSLIDAHPWDIHVELNYRKETALHIAVIAQRTSFVEKLVKRMAPDDL 127
           LYLAAL+G+W  A+ + ++    +   +   +ET LHIA  A+  +FVE LV+ M P DL
Sbjct: 165 LYLAALSGDWDVAERIFESDHQAVRARITRAQETPLHIAAGARHLTFVENLVRMMTPADL 224

Query: 128 ARPTISGYRALLFCC-------------------YVRNYIGLEILQRNPNLALKRSRFNG 182
           A     G  AL F                      +R  + L+I+Q++P +A  R R NG
Sbjct: 225 ALRNKVGNTALCFAAVSGVTKIAEVMVNKNNRLPLIRGNVALKIVQKHPKIATARGR-NG 284

BLAST of Spg036117 vs. NCBI nr
Match: XP_011462376.1 (PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 85.1 bits (209), Expect = 7.1e-13
Identity = 58/178 (32.58%), Postives = 89/178 (50.00%), Query Frame = 0

Query: 25  GDSIREDGLNLSEGTEIGHGFQNQPQNPCIGQPTTDEHSV--HNLLYLAALTGNWRKAKS 84
           GD +R+D  +++          + P+N     PT     +  +  L+LAAL G+W  A++
Sbjct: 73  GDVLRKDQKDVT----------HPPENSTTATPTIINIDLVPYVTLHLAALNGDWMTARN 132

Query: 85  LIDAHPWDIHVELNYRKETALHIAVIAQRTSFVEKLVKRMAPDDLARPTISGYRALLFCC 144
            +   P  +  ++    ETALHIA  A+RT FVE+LV  M P+DL      G  AL F  
Sbjct: 133 FLQLQPEAVRAKITKGSETALHIAAGAKRTLFVEELVMWMTPNDLELKNDVGNTALYFAA 192

Query: 145 -------------------YVRNYIGLEILQRNPNLALKRSRFNGETALHILAQKPYA 182
                               +R+ + L+I+Q++P +A  R   NGETALH++A+KP A
Sbjct: 193 VSGIKRIAEVMVDINPTLPQIRD-VALDIIQKHPKMAFARDG-NGETALHVMARKPSA 238

BLAST of Spg036117 vs. NCBI nr
Match: XP_030942514.1 (ankyrin repeat-containing protein ITN1-like [Quercus lobata])

HSP 1 Score: 81.6 bits (200), Expect = 7.8e-12
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 0

Query: 46  QNQPQNPCIGQPTTDEHSVHNLLYLAALTGNWRKAKSLIDAHPWDIHVELNYRKETALHI 105
           +NQ Q+    + T  E+     LY AAL GNW++AK  ++A P  I   +    ET LHI
Sbjct: 128 ENQNQHQTYKRLTRSEYLT---LYRAALKGNWQEAKRRLEADPDAIRYSIAEASETILHI 187

Query: 106 AVIAQRTSFVEKLVKRMAPDDLARPTISGYRALLFCCYVR-NYIGLEILQRNPNLALKRS 165
           A  ++ T+FV++LV+ + P+DL    I+GY AL F   +    I  E+++++ NL L RS
Sbjct: 188 ACASKHTAFVKELVQFLTPEDLEGKDINGYTALCFAAQLGIVVIAKEMVKKSANLPLIRS 247

Query: 166 RFNGETALHILA 177
              G T LHI A
Sbjct: 248 S-EGRTPLHIAA 255

BLAST of Spg036117 vs. NCBI nr
Match: KAF3948799.1 (hypothetical protein CMV_025248 [Castanea mollissima])

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-11
Identity = 48/123 (39.02%), Postives = 70/123 (56.91%), Query Frame = 0

Query: 55  GQPTTDEHSVHNLLYLAALTGNWRKAKSLIDAHPWDIHVELNYRKETALHIAVIAQRTSF 114
           G+   D  S+   LY AA+ G W+ AK +ID  P  + V +N + ETALHIA  A+RT+F
Sbjct: 151 GERRRDHLSICVPLYQAAIKGQWKAAKVVIDKDPRVVRVRINRKWETALHIAAAAKRTAF 210

Query: 115 VEKLVKRMAPDDLARPTISGYRALLFCCYVRNY-IGLEILQRNPNLALKRSRFNGETALH 174
           V++LVKRM  +DLA     G  A+ F        I   ++++N NL + R    G+T L+
Sbjct: 211 VKELVKRMTEEDLALQNKDGNTAICFAAATGIVEIAKVMVEKNENLPMIRGN-QGKTPLY 270

Query: 175 ILA 177
           + A
Sbjct: 271 MAA 272

BLAST of Spg036117 vs. ExPASy TrEMBL
Match: A0A6J1C813 (uncharacterized protein LOC111008827 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008827 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.6e-15
Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = 0

Query: 59  TDEHSVHNLLYLAALTGNWRKAKSLIDAHPWDIHVELNYRKETALHIAVIAQRTSFVEKL 118
           T + S +  LY AA+ G+W+ AKS+ID     + +++N   +TALHIAV  +  SFVE L
Sbjct: 107 TKKKSGNVRLYQAAINGDWKTAKSIIDKDSSALTMKINDEGDTALHIAVAKKHISFVENL 166

Query: 119 VKRMAPDDLARPTISGYRALLFCCYVRNYIGLEILQRNPNLALKRSRFNGETALHILAQK 178
           V+ ++  DL      G  AL       + I L+I+++ P LAL+R + NG+TALH+ A+K
Sbjct: 167 VQLISSSDLTVKNEKGNTALAIAS--ASDIALDIMKKKPELALERRKENGDTALHVFARK 226

Query: 179 PYAM 183
           P A+
Sbjct: 227 PSAI 228

BLAST of Spg036117 vs. ExPASy TrEMBL
Match: F6HLW7 (ANK_REP_REGION domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g04510 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-13
Identity = 51/133 (38.35%), Postives = 71/133 (53.38%), Query Frame = 0

Query: 68  LYLAALTGNWRKAKSLIDAHPWDIHVELNYRKETALHIAVIAQRTSFVEKLVKRMAPDDL 127
           LYLAAL+G+W  A+ + ++    +   +   +ET LHIA  A+  +FVE LV+ M P DL
Sbjct: 165 LYLAALSGDWDVAERIFESDHQAVRARITRAQETPLHIAAGARHLTFVENLVRMMTPADL 224

Query: 128 ARPTISGYRALLFCC-------------------YVRNYIGLEILQRNPNLALKRSRFNG 182
           A     G  AL F                      +R  + L+I+Q++P +A  R R NG
Sbjct: 225 ALRNKVGNTALCFAAVSGVTKIAEVMVNKNNRLPLIRGNVALKIVQKHPKIATARGR-NG 284

BLAST of Spg036117 vs. ExPASy TrEMBL
Match: A0A7N2MW85 (ANK_REP_REGION domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-12
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 0

Query: 46  QNQPQNPCIGQPTTDEHSVHNLLYLAALTGNWRKAKSLIDAHPWDIHVELNYRKETALHI 105
           +NQ Q+    + T  E+     LY AAL GNW++AK  ++A P  I   +    ET LHI
Sbjct: 128 ENQNQHQTYKRLTRSEYLT---LYRAALKGNWQEAKRRLEADPDAIRYSIAEASETILHI 187

Query: 106 AVIAQRTSFVEKLVKRMAPDDLARPTISGYRALLFCCYVR-NYIGLEILQRNPNLALKRS 165
           A  ++ T+FV++LV+ + P+DL    I+GY AL F   +    I  E+++++ NL L RS
Sbjct: 188 ACASKHTAFVKELVQFLTPEDLEGKDINGYTALCFAAQLGIVVIAKEMVKKSANLPLIRS 247

Query: 166 RFNGETALHILA 177
              G T LHI A
Sbjct: 248 S-EGRTPLHIAA 255

BLAST of Spg036117 vs. ExPASy TrEMBL
Match: A0A5J5B1R9 (ANK_REP_REGION domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_029665 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.4e-12
Identity = 58/182 (31.87%), Postives = 76/182 (41.76%), Query Frame = 0

Query: 67  LLYLAALTGNWRKAKSLIDAHPWDIHVELNYRKETALHIAVIAQRTSFVEKLVKRMAPDD 126
           +LYLAAL G+W KAK  +D+HP  +   +    ETALHIA  A+ T FVE+LV  M PDD
Sbjct: 183 ILYLAALKGDWEKAKEFLDSHPESLCARITRGSETALHIAAGARHTRFVEELVNLMKPDD 242

Query: 127 LARPTISGYRALLFCC------------------------------YVRNYIG------- 182
           LA     G  AL F                                Y+   +G       
Sbjct: 243 LALQNKVGNTALCFAAASGITRIAQVMVLKNKNLPLIRGSKGALPLYMAALLGHKDMVLY 302

BLAST of Spg036117 vs. ExPASy TrEMBL
Match: A0A7N2MWM1 (ANK_REP_REGION domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-11
Identity = 47/118 (39.83%), Postives = 68/118 (57.63%), Query Frame = 0

Query: 60  DEHSVHNLLYLAALTGNWRKAKSLIDAHPWDIHVELNYRKETALHIAVIAQRTSFVEKLV 119
           D  SV   LY AA+ G W+ AK +ID  P  + V +N + ETALHIA  A+RT+FV++LV
Sbjct: 153 DHLSVCVPLYQAAIKGEWKAAKLVIDKDPHVVRVRINRKLETALHIAAAAKRTAFVKELV 212

Query: 120 KRMAPDDLARPTISGYRALLFCCYVRNY-IGLEILQRNPNLALKRSRFNGETALHILA 177
           +RM  DDLA     G  A+ F        I   ++++N  L + R +  G+T L++ A
Sbjct: 213 QRMTEDDLALQNKDGNTAICFAAASGIVEIAKVMVEKNERLPMIRGK-QGKTPLYMAA 269

BLAST of Spg036117 vs. TAIR 10
Match: AT3G54070.1 (Ankyrin repeat family protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-09
Identity = 36/122 (29.51%), Postives = 56/122 (45.90%), Query Frame = 0

Query: 40  EIGHGFQNQPQNPCIGQPTTDEHS--------VHNLLYLAALTGNWRKAKSLIDAHPWDI 99
           E+G    + P       P  ++H+          NL+Y A LTG+W+ A +LI     ++
Sbjct: 18  EVGEPSGSSPNEDPSSLPNVEDHTSEDVTKPHSRNLMYKAVLTGDWKTASTLISRKECNV 77

Query: 100 HVELNYRKETALHIAVIAQRTSFVEKLVKRMAPDDLARPTISGYRALLFCCYVRNYIGLE 154
             ++    E ALHIAV A+   FV  L++ M P DL+     G   L F   + +    E
Sbjct: 78  VEQITGNSEIALHIAVAAKHKDFVRNLLREMDPPDLSLKNKDGNTPLSFAAALGDIETAE 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022137352.17.5e-1540.32uncharacterized protein LOC111008827 isoform X2 [Momordica charantia][more]
CBI30987.34.1e-1338.35unnamed protein product, partial [Vitis vinifera][more]
XP_011462376.17.1e-1332.58PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Fragaria... [more]
XP_030942514.17.8e-1238.64ankyrin repeat-containing protein ITN1-like [Quercus lobata][more]
KAF3948799.11.0e-1139.02hypothetical protein CMV_025248 [Castanea mollissima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C8133.6e-1540.32uncharacterized protein LOC111008827 isoform X2 OS=Momordica charantia OX=3673 G... [more]
F6HLW72.0e-1338.35ANK_REP_REGION domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_10s00... [more]
A0A7N2MW853.8e-1238.64ANK_REP_REGION domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A5J5B1R96.4e-1231.87ANK_REP_REGION domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_02... [more]
A0A7N2MWM13.2e-1139.83ANK_REP_REGION domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G54070.11.0e-0929.51Ankyrin repeat family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 37..188
e-value: 3.6E-11
score: 44.7
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 61..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR24177CASKINcoord: 58..185
NoneNo IPR availablePANTHERPTHR24177:SF277REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 58..185

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg036117.1Spg036117.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane