Spg036102 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg036102
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold5: 46796392 .. 46796613 (-)
RNA-Seq Expression	Spg036102
Synteny	Spg036102

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGACTGATCAGAGAAATTGGCGGTGTTAATGGAAGTTTTGGCCTCGCCGGTGACGTTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAAAGGAGAGGAATTCCACGGCGGACGTTGAGCTTTACGGCGGCGGTTGCGCCGCCGGCTGCGGCGCTGGATGTGGGGCTTGA

mRNA sequence

ATGGCGAGACTGATCAGAGAAATTGGCGGTGTTAATGGAAGTTTTGGCCTCGCCGGTGACGTTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAAAGGAGAGGAATTCCACGGCGGACGTTGAGCTTTACGGCGGCGGTTGCGCCGCCGGCTGCGGCGCTGGATGTGGGGCTTGA

Coding sequence (CDS)

ATGGCGAGACTGATCAGAGAAATTGGCGGTGTTAATGGAAGTTTTGGCCTCGCCGGTGACGTTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAAAGGAGAGGAATTCCACGGCGGACGTTGAGCTTTACGGCGGCGGTTGCGCCGCCGGCTGCGGCGCTGGATGTGGGGCTTGA

Protein sequence

MARLIREIGGVNGSFGLAGDVYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA

Homology

[Close]

BLAST of Spg036102 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.3 bits (329), Expect = 3.3e-27
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MARLIREIGGVNGSFGLAGDVYLLFWAALFTLCIISTIIFSCSDGMS-KERNSTADVELY 60
          MARL+RE G  NGSFGLAGD+YLLFWAALFTLCIISTIIFSCSDGMS K+RNSTADVELY
Sbjct: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60

Query: 61 GGGCAAGCGAGCGA 74
          G GCAAGCGAGCGA
Sbjct: 61 GAGCAAGCGAGCGA 74

[Close]

BLAST of Spg036102 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 5.3e-25
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1   MARLIREIGGVNGSFGLA-GDVYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELY 60
           MARL+REI   NGSFGLA G+ Y LFW ALFTLCIIST+IFSCSDGMSK+RNST DVELY
Sbjct: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88

Query: 61  GGGCAAGCGAGCGA 74
           GGGCAAGCGAGCGA
Sbjct: 89  GGGCAAGCGAGCGA 102

[Close]

BLAST of Spg036102 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.2 bits (287), Expect = 2.4e-22
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  MARLIREIGGVNGSFGLAGDVYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELYG 60
          MARLI EIG V+GSFGL+GD+  LF AALFTLCIIS I FSCSDG+SKERNSTADVELYG
Sbjct: 1  MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG 60

Query: 61 GGCAAGCGA 70
          GGCAAGCGA
Sbjct: 61 GGCAAGCGA 69

[Close]

BLAST of Spg036102 vs. NCBI nr
Match: XP_015882794.1 (uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-15
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1  MARLIREIGGVNGSFGLAGDVYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELYG 60
          M RL R++  V+GS G AG  +++ W AL  +CIIS IIFSC+DG+SKE+ STAD ELYG
Sbjct: 1  MVRLWRDLASVHGS-GSAG--FVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELYG 60

Query: 61 GGCAAGCGAGCGA 74
          GGCAAGCGAGCGA
Sbjct: 61 GGCAAGCGAGCGA 70

[Close]

BLAST of Spg036102 vs. NCBI nr
Match: PON38946.1 (hypothetical protein PanWU01x14_308610 [Parasponia andersonii])

HSP 1 Score: 90.5 bits (223), Expect = 6.4e-15
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1  MARLIREIGGVNGSFGL--AGDVYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVEL 60
          M RL RE  GV+G  G   +G   + F   L TLCI+STIIFSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGAGCG 73
          YGGGCAAGCGAGCG
Sbjct: 61 YGGGCAAGCGAGCG 74

[Close]

BLAST of Spg036102 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-25
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1  MARLIREIGGVNGSFGLA-GDVYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELY 60
          MARL+REI   NGSFGLA G+ Y LFW ALFTLCIIST+IFSCSDGMSK+RNST DVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCAAGCGAGCGA 74
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 74

[Close]

BLAST of Spg036102 vs. ExPASy TrEMBL
Match: A0A6P3ZT85 (uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC107418606 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.2e-16
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1  MARLIREIGGVNGSFGLAGDVYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELYG 60
          M RL R++  V+GS G AG  +++ W AL  +CIIS IIFSC+DG+SKE+ STAD ELYG
Sbjct: 1  MVRLWRDLASVHGS-GSAG--FVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELYG 60

Query: 61 GGCAAGCGAGCGA 74
          GGCAAGCGAGCGA
Sbjct: 61 GGCAAGCGAGCGA 70

[Close]

BLAST of Spg036102 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 46/74 (62.16%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1  MARLIREIGGVNGSFGLAGDVYLLFWAA-LFTLCIISTIIFSCSDGMSKERNSTADVELY 60
          M RL RE+  V+G  G     +L+F    L TLCI+STIIFSC+DG+SKE+ S  D ELY
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 61 GGGCAAGCGAGCGA 74
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 74

[Close]

BLAST of Spg036102 vs. ExPASy TrEMBL
Match: A0A803R004 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 46/74 (62.16%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1  MARLIREIGGVNGSFGLAGDVYLLFWAA-LFTLCIISTIIFSCSDGMSKERNSTADVELY 60
          M RL RE+  V+G  G     +L+F    L TLCI+STIIFSC+DG+SKE+ S  D ELY
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 61 GGGCAAGCGAGCGA 74
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 74

[Close]

BLAST of Spg036102 vs. ExPASy TrEMBL
Match: A0A2P5AQX4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.1e-15
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1  MARLIREIGGVNGSFGL--AGDVYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVEL 60
          M RL RE  GV+G  G   +G   + F   L TLCI+STIIFSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGAGCG 73
          YGGGCAAGCGAGCG
Sbjct: 61 YGGGCAAGCGAGCG 74

[Close]

BLAST of Spg036102 vs. TAIR 10
Match: AT1G68238.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 1.5e-06
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 19 GDVYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCG 73
          G+V L  WAA+    +I+ +IFSCSD  SK   +    ++ G  CAAGCG GCG
Sbjct: 14 GEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHTND---DVNGSSCAAGCGGGCG 64

[Close]

BLAST of Spg036102 vs. TAIR 10
Match: AT3G18250.1 (Putative membrane lipoprotein )

HSP 1 Score: 44.3 bits (103), Expect = 4.9e-05
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 18 AGDVYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELYGGGC-AAGCGAGCG 73
          A  ++ + + A+   CI+S ++FSC+DG+S  R +T+     GGGC  AGCG GCG
Sbjct: 21 ASYLFHVVFLAVIGCCILSALLFSCADGVSDNR-ATSGTSTGGGGCGGAGCGGGCG 75

The following BLAST results are available for this feature:

BLAST of Spg036102 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584341.1	3.3e-27	89.19	hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652552.1	5.3e-25	83.78	hypothetical protein Csa_013579 [Cucumis sativus]	[more]
KAG6572949.1	2.4e-22	84.06	hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_015882794.1	1.7e-15	65.75	uncharacterized protein LOC107418606 [Ziziphus jujuba]	[more]
PON38946.1	6.4e-15	63.51	hypothetical protein PanWU01x14_308610 [Parasponia andersonii]	[more]

BLAST of Spg036102 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg036102 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQU7	2.5e-25	83.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1	[more]
A0A6P3ZT85	8.2e-16	65.75	uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC10741860...	[more]
A0A803R005	1.8e-15	62.16	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803R004	1.8e-15	62.16	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2P5AQX4	3.1e-15	63.51	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE...	[more]

BLAST of Spg036102 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68238.1	1.5e-06	46.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G18250.1	4.9e-05	42.86	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37199:SF2	MEMBRANE LIPOPROTEIN-RELATED	coord: 1..73
None	No IPR available	PANTHER	PTHR37199	TRANSMEMBRANE PROTEIN	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg036102.1	Spg036102.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane