Spg035916 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035916
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSecretion protein HlyD family protein
Locationscaffold5: 38493466 .. 38497629 (-)
RNA-Seq ExpressionSpg035916
SyntenySpg035916
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGACACGCCTGGCGCGCCTGCTGCACTGCAGGTGCGCCTCGGCCTCGACAAAAAGCCAAGGCCGACCAGACTTTTCAGTCTGCCTTTTCTTTTTTTTAATTTGAAATTTGAATTTCAAATTTCCCCACCGATTTTTCGCAGACTTCGCCTATAAATATCACCTTTCCATTCCCATTTCTCTTCACAATCCCTTACTCCCTTGCTTGCTTTTCCTCTGATTTTAGTTTCAAAAGGTAGATTTTAGTAAAAATTTGTCTCTCTTCTTCTTTTATTTTACTTTATGGCTAGTGAGGATTCGATTACTTCTCCGGATGTGGGGGAATCTTACTCTGATGATGGTCCTTCCAACTCTAGCTGTTTTTTAGACCTGGAACATTCCGATAGCAATGATAGGGAGCCTCCTGCACACTCCTCAGATTTATCATCCTCGTTGACCGCATCTCAATTAGAGTTTTTGCGGCGCAAATATGATATTCTTGACGATGTGCATCTTCGGCTTCCTAACGCTAATGAAAGTTTTGAGAACCCCCCGACGGAGAAGTTACGTTTTATAATGCCATGTTTAGATTCGGCGTTCTTCTACCTCTTCCATTATTTTTGCAAGATTTTTTAGTCTGTACAGGTTTAGCCCCCGCTCAAATTGTCCTGAATGGGTGGTGTCACCTTATTGGTTGATTTGCCCTTTGGGAAATGCACGGTGGGGGGGTCTCTAATGTCTGTTGAAGATTTATTGTCTTTACATCATATTAGTCATAATCTCACTTTAGGTCATCTCTTTTACTATATTAGCGCTAAAGAAGGTGTCTTAATAAGCGGGCCCACCTCAGTAAAAAAAGTGGAAAAATGGTTGGTTTTATGTGAGTGGCAATTGGTTAGAAAAAACTCTGATGGTTCTTTTTTTGGGGTTCCAATGAGGTTCGGAGAATACGGTAAGCATTTTCTACATTCTCCTTCCTGTTGGAATCCATTTCTCATCATTGCAATTTTTTTTTAAAAAAAAAACTCCTTTTTCTGTTTTCTCAGTACCTCGCAACATCCAGCGCTCCCCAATAGCTAAGAAGTTTGCCAAATACGTCTTGACACTTGCACCGATCGACCGCCACGACCCCTATTTAATTGACCAGAGAGTTCTTGAGTCGATTGCACTATCACGACAACGAACGATAGGTAGAAGGTTCTGGTTGGCCTCGAGTTCTTTTTTTAAATGTTATCTGAACTTTTGTTTTTCTGTCATGTCCCACAGAAATGGCTTTCCGTGGAATGTACGATTCTCAAAAGAGAATGCGTGAGTCTCGCAATAACATTTAAAAAAAGAACGAGCAGCTTCCGTGGATCTCACCGAGGGTGATGAAGGTGTTCATATAACACATGCGGAAGCAATTGAAGATCGAAAGCACTTAAGACATTCAATTTTGAACCTAAAGCATGCATGTTCTAGAAAAACAGAACAGAAAGTAAAGGAGTACCAACCTCTTTGTAGCTCACTTGAGAGGAACTCCTTGTGATGTTTTCCTTCTCCAACTTCTCTTGGACAACCTTTAGAGCCTTCCCTACTATTCTCCGGGCCGAGAACGACTTGTGGGAGTCTATAGTGATAGGGAATGGGAAGGGAATGCTTGAAGGTTCAAGCTCTATGGAGATATTAGATGAGAGAGTGATTGAGGAAGAAATTCAGCAGCATAACATTAAGGTAAATGCTATATACTTCCATAATCTGATTCTTCCTCTATATATAGAGAGAATCCATGCAAGAAGGACCTTCAAAATGCAAGACACTTGGTGGTCTTGATGGTGAAAGTGGAAGCTAGGTGTTCAAGCAACACAACATGCACTATTGCATGAATGTGGTGTAATTCCACTTTGAGTCTTCATGCAAGAGTGGATTTCCAAGTTTTTCCACTTACTTTTGATTCAAAATCAATTGTATTTTCAGCATGAATGATATTAATTTCAATTCTCAATTGAAATTAATCACAAATTCAATTTTGAAGCTTGCCTCACAAATTGTAAATGATTAATCAAATTAATCATCCTTTTATTGTGTATTTTATATATGAATCTCAATTCATGTATATTGTATTTAAACCCTTTTAAATACCTTATCTCTCATTTTCTAATTTAATTCATAATTAAATTATTGTGTCGAACACAATTTTACGATAATTCCCTATTTCCCGATTTTGAACAATTCAAAGATTCCTATAAAAATGTCTAGGCTTTAATCCGATATGAGCTAGTAGAGGGACCTAATGGACCTATAGATCATGGGCTCCAACGATTCAAGGCTAACCGACTAATCTCATTATCTAAGCTAGCCAACATTCGTTAACTACCGGGACACTCCACTATAGCTCGATAGTTGCACTCCCCTCACTATAGATATATTTTCGTCCACTTGATTTAACCATGTTTAGTAAGTCGTTCCTTCACAGGTTGTTCGTAGCTATAGCTAGGTCAAATAACCGTTTCACCCCTATAGTACTTCTTGTTCCTTAAGTTCCACTAATCCTCTAATGAACAATCGGTTTGCGGTCCAACCATCAAACCTAAGTCCCTCTCGATCTAACAAGAGGGTGGGGCCCCTTGTTCAAGTCCTGGAGTTAGTACTTAAGGGAACAACCTATCTACTAACCCTGAAAAGGGTAGGAGTGAATTCCGTCTTGCGAGACTATGTCCCTAGCTATCTATTCGATCTTATCCCCAAAATGGTAGGCTTGTTGAGTCGGCGATGCTGGCCACTCTCACCCATGCAGATCAAAGGATAATCTCGTATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGAACGAGTTACCTAGGTCATCTCTGAGAAATAGTCAGTTTCTTCAGTAAACGGCGTTATAAAGAGAAAGTGACTTATTTCGTGGTCCAGTCTTATGCAAACTCATTGCATAGGACGCCCCCACTCGCATGTCTCCACATGAACGATTTAGGATCTCATCGTTTGTACTTAATACAAAGTGGGCCGCGTCCATAGTGTCCCCAGGATAAGGCACCCAACCGTATCCTTATACTATAGACTATTATGGCTATAAACTTGAACTTGATCCTATGATATGTCTCTACATATAGTTCGAGTATTCATTTTATAGCCAAGGATCTTAGTTTATTGGATTTAGGTTAATCATTCGCAATTTACATATTCATTAACATCTTTTACATAATAACTTCAATAACGACTTTATTGAAAATAGAATATGTATAATGATTTACAAACTACGAGTTTATAGGACATTAAACCCAACAAACTCCCACTTGGACTAGAAACTCTAGTGGGGTACATGAAGTTAGGTGTGAGAGAAGTATAAAGACAATAAACTAGGGCATCATCCATACCCTTACAGGTGAGACCCTGCGGGCTCCTGCTGAGGCCTCTTGTCGACCAGCCCCCTCTACTCGTAGAACCCGCTACCAGACACGTTCCACAGTTACCGACTCGACCTCCAGTCGGGTATCCCAGTGTTTGCTCTACCCGAGAACTACGGTAGCGAGGGTAGTGAGATGGACATCATGACGCAAAACTTCATGTGTTGGTAGGGACTGCAATCCCGTAGGCCCGAGGGAGAGTTAGGGGTCAGGCTCAAGGAATCAGGGAAGTTCAGAGACACCTTTGAGATGTAAGCTCGTAAAGCACCTCCCTTTTCATGCCTTTATTATTCTTATTGCTAACTCAACTCTTCTTCCCTTGGTGTAGACTTTCACTAAGGCCACTGCCTCTTCCATAAGCCTGGCCAACAAGATCAATGAGCTCCAACTGAACAGCGTCCCAACAAGCGAGCTCTTACAGGCCCAGGAGAAACTCGTTGAAGCCAACTGCCTGCTGGACGAAGTTTGAGCAAAATTCAACTCCAGGGAAGCTGAGATAGAAACTACCAAAGCCCAGCTAATGGAGGCTAAGGCTCACTTGGCCGATGCCAACTACCTGGTTCAAGAGTTCAGGAAGACCAATGAATTTTATGCCATGCAGGATGAAATATGGAACGATGACATCAAATGGGCTGTGAAGAGATTTGGCAAGCGCCATCCAACTGTGGATGGTTCGTTCATTCAAGAAGATCTCGCCACTCTCGCGACCAACCCCGATGCCTTTGCTTCATCTGACGAGTCTTCTGGTGGAAGAGATCACATGGATCTTTGA

mRNA sequence

ATGCTTGACACGCCTGGCGCGCCTGCTGCACTGCAGGATTCGATTACTTCTCCGGATGTGGGGGAATCTTACTCTGATGATGGTCCTTCCAACTCTAGCTGTTTTTTAGACCTGGAACATTCCGATAGCAATGATAGGGAGCCTCCTGCACACTCCTCAGATTTATCATCCTCGTTGACCGCATCTCAATTAGAGTTTTTGCGGCGCAAATATGATATTCTTGACGATGTGCATCTTCGGCTTCCTAACGCTAATGAAAGTTTTGAGAACCCCCCGACGGAGAAGTTACGTTTTATAATGCCATGTTTAGATTCGGCAAATGGCTTTCCGTGGAATGTACGATTCTCAAAAGAGAATGCAGCCTTCCCTACTATTCTCCGGGCCGAGAACGACTTGTGGGAGTCTATAGTGATAGGGAATGGGAAGGGAATGCTTGAAGGTTCAAGCTCTATGGAGATATTAGATGAGAGAGTGATTGAGGAAGAAATTCAGCAGCATAACATTAAGGGACTGCAATCCCGTAGGCCCGAGGGAGAGTTAGGGGTCAGGCTCAAGGAATCAGGGAAGTTCAGAGACACCTTTGAGATGGAAGCTGAGATAGAAACTACCAAAGCCCAGCTAATGGAGGCTAAGGCTCACTTGGCCGATGCCAACTACCTGGTTCAAGAGTTCAGGAAGACCAATGAATTTTATGCCATGCAGGATGAAATATGGAACGATGACATCAAATGGGCTGTGAAGAGATTTGGCAAGCGCCATCCAACTGTGGATGGTTCGTTCATTCAAGAAGATCTCGCCACTCTCGCGACCAACCCCGATGCCTTTGCTTCATCTGACGAGTCTTCTGGTGGAAGAGATCACATGGATCTTTGA

Coding sequence (CDS)

ATGCTTGACACGCCTGGCGCGCCTGCTGCACTGCAGGATTCGATTACTTCTCCGGATGTGGGGGAATCTTACTCTGATGATGGTCCTTCCAACTCTAGCTGTTTTTTAGACCTGGAACATTCCGATAGCAATGATAGGGAGCCTCCTGCACACTCCTCAGATTTATCATCCTCGTTGACCGCATCTCAATTAGAGTTTTTGCGGCGCAAATATGATATTCTTGACGATGTGCATCTTCGGCTTCCTAACGCTAATGAAAGTTTTGAGAACCCCCCGACGGAGAAGTTACGTTTTATAATGCCATGTTTAGATTCGGCAAATGGCTTTCCGTGGAATGTACGATTCTCAAAAGAGAATGCAGCCTTCCCTACTATTCTCCGGGCCGAGAACGACTTGTGGGAGTCTATAGTGATAGGGAATGGGAAGGGAATGCTTGAAGGTTCAAGCTCTATGGAGATATTAGATGAGAGAGTGATTGAGGAAGAAATTCAGCAGCATAACATTAAGGGACTGCAATCCCGTAGGCCCGAGGGAGAGTTAGGGGTCAGGCTCAAGGAATCAGGGAAGTTCAGAGACACCTTTGAGATGGAAGCTGAGATAGAAACTACCAAAGCCCAGCTAATGGAGGCTAAGGCTCACTTGGCCGATGCCAACTACCTGGTTCAAGAGTTCAGGAAGACCAATGAATTTTATGCCATGCAGGATGAAATATGGAACGATGACATCAAATGGGCTGTGAAGAGATTTGGCAAGCGCCATCCAACTGTGGATGGTTCGTTCATTCAAGAAGATCTCGCCACTCTCGCGACCAACCCCGATGCCTTTGCTTCATCTGACGAGTCTTCTGGTGGAAGAGATCACATGGATCTTTGA

Protein sequence

MLDTPGAPAALQDSITSPDVGESYSDDGPSNSSCFLDLEHSDSNDREPPAHSSDLSSSLTASQLEFLRRKYDILDDVHLRLPNANESFENPPTEKLRFIMPCLDSANGFPWNVRFSKENAAFPTILRAENDLWESIVIGNGKGMLEGSSSMEILDERVIEEEIQQHNIKGLQSRRPEGELGVRLKESGKFRDTFEMEAEIETTKAQLMEAKAHLADANYLVQEFRKTNEFYAMQDEIWNDDIKWAVKRFGKRHPTVDGSFIQEDLATLATNPDAFASSDESSGGRDHMDL
Homology
BLAST of Spg035916 vs. NCBI nr
Match: TYK01274.1 (Secretion protein HlyD family protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 4.8e-05
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 197 EAEIETTKAQLMEAKAHLADANYLVQEFRKTNEFYAMQDEIWNDDIKWAVKRFGKRHPTV 256
           + +I+  KAQL EAK+ L+DA  L ++F KT EF  MQ++I    + W+V++    HP +
Sbjct: 208 QVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVRQASIEHPGI 267

Query: 257 DGSFI 262
           D SF+
Sbjct: 268 DFSFL 272

BLAST of Spg035916 vs. NCBI nr
Match: XP_031737089.1 (uncharacterized protein LOC105435920 isoform X5 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 4.8e-05
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 197 EAEIETTKAQLMEAKAHLADANYLVQEFRKTNEFYAMQDEIWNDDIKWAVKRFGKRHPTV 256
           + +I+  KAQL EAK+ L+DA  L ++F KT EF  MQ++I    + W+V++    HP +
Sbjct: 247 QVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVRQASIEHPGI 306

Query: 257 DGSFI 262
           D SF+
Sbjct: 307 DFSFL 311

BLAST of Spg035916 vs. NCBI nr
Match: XP_031737075.1 (uncharacterized protein LOC105435920 isoform X1 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 4.8e-05
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 197 EAEIETTKAQLMEAKAHLADANYLVQEFRKTNEFYAMQDEIWNDDIKWAVKRFGKRHPTV 256
           + +I+  KAQL EAK+ L+DA  L ++F KT EF  MQ++I    + W+V++    HP +
Sbjct: 278 QVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVRQASIEHPGI 337

Query: 257 DGSFI 262
           D SF+
Sbjct: 338 DFSFL 342

BLAST of Spg035916 vs. NCBI nr
Match: XP_031737083.1 (uncharacterized protein LOC105435920 isoform X3 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 4.8e-05
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 197 EAEIETTKAQLMEAKAHLADANYLVQEFRKTNEFYAMQDEIWNDDIKWAVKRFGKRHPTV 256
           + +I+  KAQL EAK+ L+DA  L ++F KT EF  MQ++I    + W+V++    HP +
Sbjct: 264 QVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVRQASIEHPGI 323

Query: 257 DGSFI 262
           D SF+
Sbjct: 324 DFSFL 328

BLAST of Spg035916 vs. NCBI nr
Match: KGN66039.2 (hypothetical protein Csa_020117 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 4.8e-05
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 197 EAEIETTKAQLMEAKAHLADANYLVQEFRKTNEFYAMQDEIWNDDIKWAVKRFGKRHPTV 256
           + +I+  KAQL EAK+ L+DA  L ++F KT EF  MQ++I    + W+V++    HP +
Sbjct: 263 QVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVRQASIEHPGI 322

Query: 257 DGSFI 262
           D SF+
Sbjct: 323 DFSFL 327

BLAST of Spg035916 vs. ExPASy TrEMBL
Match: A0A5A7SSF9 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00750 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 197 EAEIETTKAQLMEAKAHLADANYLVQEFRKTNEFYAMQDEIWNDDIKWAVKRFGKRHPTV 256
           + +I+  KAQL EAK+ L+DA  L ++F KT EF  MQ++I    + W+V++    HP +
Sbjct: 259 QVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVRQASIEHPGI 318

Query: 257 DGSFI 262
           D SF+
Sbjct: 319 DFSFL 323

BLAST of Spg035916 vs. ExPASy TrEMBL
Match: A0A5D3BQ22 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00610 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 197 EAEIETTKAQLMEAKAHLADANYLVQEFRKTNEFYAMQDEIWNDDIKWAVKRFGKRHPTV 256
           + +I+  KAQL EAK+ L+DA  L ++F KT EF  MQ++I    + W+V++    HP +
Sbjct: 208 QVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVRQASIEHPGI 267

Query: 257 DGSFI 262
           D SF+
Sbjct: 268 DFSFL 272

BLAST of Spg035916 vs. ExPASy TrEMBL
Match: A0A0A0LXX2 (Secretion protein HlyD family protein OS=Cucumis sativus OX=3659 GN=Csa_1G495250 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 197 EAEIETTKAQLMEAKAHLADANYLVQEFRKTNEFYAMQDEIWNDDIKWAVKRFGKRHPTV 256
           + +I+  KAQL EAK+ L+DA  L ++F KT EF  MQ++I    + W+V++    HP +
Sbjct: 40  QVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVRQASIEHPGI 99

Query: 257 DGSFI 262
           D SF+
Sbjct: 100 DFSFL 104

BLAST of Spg035916 vs. ExPASy TrEMBL
Match: A0A1S3C5B2 (uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 197 EAEIETTKAQLMEAKAHLADANYLVQEFRKTNEFYAMQDEIWNDDIKWAVKRFGKRHPTV 256
           + +I+  KAQL EAK+ L+DA  L ++F KT EF  MQ++I    + W+V++    HP +
Sbjct: 269 QVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVRQASIEHPGI 328

Query: 257 DGSFI 262
           D SF+
Sbjct: 329 DFSFL 333

BLAST of Spg035916 vs. ExPASy TrEMBL
Match: A0A1S4E2A9 (uncharacterized protein LOC103497199 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 197 EAEIETTKAQLMEAKAHLADANYLVQEFRKTNEFYAMQDEIWNDDIKWAVKRFGKRHPTV 256
           + +I+  KAQL EAK+ L+DA  L ++F KT EF  MQ++I    + W+V++    HP +
Sbjct: 224 QVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVRQASIEHPGI 283

Query: 257 DGSFI 262
           D SF+
Sbjct: 284 DFSFL 288

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK01274.14.8e-0541.54Secretion protein HlyD family protein [Cucumis melo var. makuwa][more]
XP_031737089.14.8e-0541.54uncharacterized protein LOC105435920 isoform X5 [Cucumis sativus][more]
XP_031737075.14.8e-0541.54uncharacterized protein LOC105435920 isoform X1 [Cucumis sativus][more]
XP_031737083.14.8e-0541.54uncharacterized protein LOC105435920 isoform X3 [Cucumis sativus][more]
KGN66039.24.8e-0541.54hypothetical protein Csa_020117 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SSF92.3e-0541.54Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3BQ222.3e-0541.54Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A0A0LXX22.3e-0541.54Secretion protein HlyD family protein OS=Cucumis sativus OX=3659 GN=Csa_1G495250... [more]
A0A1S3C5B22.3e-0541.54uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E2A92.3e-0541.54uncharacterized protein LOC103497199 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035916.1Spg035916.1mRNA