Spg035854 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035854
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein TIFY 5A-like
Locationscaffold5: 39815258 .. 39816207 (+)
RNA-Seq ExpressionSpg035854
SyntenySpg035854
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCGCACCGCCACACAAAAATCCATTCATTTCAATTCACTTTAAATTGAATTAAATAAAATAAAATTAATAATAAGAAGTCACGAGCTGCCGTGCCGACTGTGGCGCGTGATGAAGCTGAAAAAGTGGGGCCCATCCCCGTGTTCCTCGTGATTTTATTATTAAATAAATCTCTTTATCTCTTTTCCACTCTGCCAGTTGCCTTCCGCCATTTGCCAACCCAACCAAACAAAACAAATCCTATATATATATTCCTTTCCTTTCTTCTTCTTCTTCACCTTCCTTAACCTTCCCTTTGACTCCATCACAAATTTTCCCACTTCAATGGAAACCATCCTCAACTGCAACTTGGACCTCTGTCTCTCTCCCCCTTCTTCCTCCGCCACCGCCGACTCACCACACAACCGCGTCAGCCCTACTGGACTCCCGGTTGTCGATCCGACCGAGCTCCAGGTACTATTTCTATAACAAGTGATTATCGATATTAATTAATTAATTAGGTAGAGTTGGCATTGGTGTTGAGACGATGGACTTAGATGTATTTAGTTAAATTATTATTCATGTTTTTGTAGGTGAGGGCGATAATTGTTCAAGCGACGAAGCAAATGGAGGAGACAAGATCGACGCCTCGGATCAGATCGGAAGCGTCTTCGACGTCGATCGACCAGCTATCGATGAAGAGCGGAGCCAGCCCCGCCATGAGGAGATCGTTGCAAAGCTTTTTACAGAAGAGAAAGCATCGAATTCAAACACTTTCACCTTATACTCATTAGCTTAATTAATATTATTCTCAGTTTCACCTTATAAATTTTGACCTTCTTTTCAGTTTTTTTAGTTAGGAGTTGAGTTTCGATTGTATTGTATTGTATTGTATATATTGGCCTTGTTTATTTGCTTATATAGATTATTATATACTCAGATTTCTCCTTTAATTTATGAAGTTTAATTTT

mRNA sequence

ATGGAAACCATCCTCAACTGCAACTTGGACCTCTGTCTCTCTCCCCCTTCTTCCTCCGCCACCGCCGACTCACCACACAACCGCGTCAGCCCTACTGGACTCCCGGTTGTCGATCCGACCGAGCTCCAGGTGAGGGCGATAATTGTTCAAGCGACGAAGCAAATGGAGGAGACAAGATCGACGCCTCGGATCAGATCGGAAGCGTCTTCGACGTCGATCGACCAGCTATCGATGAAGAGCGGAGCCAGCCCCGCCATGAGGAGATCGTTGCAAAGCTTTTTACAGAAGAGAAAGCATCGAATTCAAACACTTTCACCTTATACTCATTAG

Coding sequence (CDS)

ATGGAAACCATCCTCAACTGCAACTTGGACCTCTGTCTCTCTCCCCCTTCTTCCTCCGCCACCGCCGACTCACCACACAACCGCGTCAGCCCTACTGGACTCCCGGTTGTCGATCCGACCGAGCTCCAGGTGAGGGCGATAATTGTTCAAGCGACGAAGCAAATGGAGGAGACAAGATCGACGCCTCGGATCAGATCGGAAGCGTCTTCGACGTCGATCGACCAGCTATCGATGAAGAGCGGAGCCAGCCCCGCCATGAGGAGATCGTTGCAAAGCTTTTTACAGAAGAGAAAGCATCGAATTCAAACACTTTCACCTTATACTCATTAG

Protein sequence

METILNCNLDLCLSPPSSSATADSPHNRVSPTGLPVVDPTELQVRAIIVQATKQMEETRSTPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH
Homology
BLAST of Spg035854 vs. NCBI nr
Match: XP_038895134.1 (protein TIFY 5A-like [Benincasa hispida])

HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 76/120 (63.33%), Postives = 89/120 (74.17%), Query Frame = 0

Query: 1   METILNCNLDLCLSPPSSS----------ATADSPHNRVSPTGLPVVDPTELQVRAIIVQ 60
           ME  LNCNL+LCLSPPSSS          +T+ S HN +SPT +P++D TELQ RAIIV+
Sbjct: 1   MEPFLNCNLELCLSPPSSSPSTIAVTATNSTSTSQHNHLSPTEVPILDLTELQARAIIVR 60

Query: 61  ATKQME-ETRSTPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH 110
           AT+QME E RST R     S  + +Q+SMKSGASP+MRRSLQ FLQKRKHR QTLSPYTH
Sbjct: 61  ATRQMEAERRSTTR---RISLPTTEQISMKSGASPSMRRSLQRFLQKRKHRTQTLSPYTH 117

BLAST of Spg035854 vs. NCBI nr
Match: XP_022927150.1 (protein TIFY 5A-like [Cucurbita moschata])

HSP 1 Score: 124.0 bits (310), Expect = 7.9e-25
Identity = 72/116 (62.07%), Postives = 86/116 (74.14%), Query Frame = 0

Query: 1   METILNCNLDLCLSPPSSS-------ATADSPHNRVSPTGLPVVDPTELQVRAIIVQATK 60
           ME ILNCNL+LCLSPPSSS       +T+ S HN + PT +P+ D TELQ RAIIV+AT 
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATANSTSTSCHNHIDPTRVPIPDHTELQARAIIVRATT 60

Query: 61  QMEETRSTPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH 110
           QME  R   R+ +   S+   ++SMKSGASP+MRRSLQ FLQKRKHRIQTLSPY+H
Sbjct: 61  QMEAER---RLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 113

BLAST of Spg035854 vs. NCBI nr
Match: KAG7019513.1 (Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 72/118 (61.02%), Postives = 86/118 (72.88%), Query Frame = 0

Query: 1   METILNCNLDLCLSPPSSS---------ATADSPHNRVSPTGLPVVDPTELQVRAIIVQA 60
           ME ILNCNL+LCLSPPSSS         +T+ S HN + PT +P+ D TELQ RAIIV+A
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDHTELQARAIIVRA 60

Query: 61  TKQMEETRSTPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH 110
           T QME  R   R+ +   S+   ++SMKSGASP+MRRSLQ FLQKRKHRIQTLSPY+H
Sbjct: 61  TTQMEAER---RLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115

BLAST of Spg035854 vs. NCBI nr
Match: XP_023520316.1 (protein TIFY 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121.7 bits (304), Expect = 3.9e-24
Identity = 72/118 (61.02%), Postives = 86/118 (72.88%), Query Frame = 0

Query: 1   METILNCNLDLCLSPPSSS---------ATADSPHNRVSPTGLPVVDPTELQVRAIIVQA 60
           ME ILNCNL+LCLSPPSSS         +T+ S HN + PT +P+ D TELQ RAIIV+A
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDLTELQARAIIVRA 60

Query: 61  TKQMEETRSTPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH 110
           T QME  R   R+ +   S+   ++SMKSGASP+MRRSLQ FLQKRKHRIQTLSPY+H
Sbjct: 61  TTQMEVER---RLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115

BLAST of Spg035854 vs. NCBI nr
Match: KAG6583895.1 (Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 5.1e-24
Identity = 73/118 (61.86%), Postives = 87/118 (73.73%), Query Frame = 0

Query: 1   METILNCNLDLCLSPPSSS-----ATADSP----HNRVSPTGLPVVDPTELQVRAIIVQA 60
           ME ILNCNL+LCLSPPSSS     ATA+S     HN + PT +P+ D TELQ RAIIV+A
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATATANSMSTSCHNHIDPTRVPIPDHTELQARAIIVRA 60

Query: 61  TKQMEETRSTPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH 110
           T QME  R   R+ +   S+   ++SMKSGA+P+MRRSLQ FLQKRKHRIQTLSPY+H
Sbjct: 61  TTQMEAER---RLTTCHISSPTQRVSMKSGANPSMRRSLQRFLQKRKHRIQTLSPYSH 115

BLAST of Spg035854 vs. ExPASy TrEMBL
Match: A0A6J1EN30 (protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.8e-25
Identity = 72/116 (62.07%), Postives = 86/116 (74.14%), Query Frame = 0

Query: 1   METILNCNLDLCLSPPSSS-------ATADSPHNRVSPTGLPVVDPTELQVRAIIVQATK 60
           ME ILNCNL+LCLSPPSSS       +T+ S HN + PT +P+ D TELQ RAIIV+AT 
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATANSTSTSCHNHIDPTRVPIPDHTELQARAIIVRATT 60

Query: 61  QMEETRSTPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH 110
           QME  R   R+ +   S+   ++SMKSGASP+MRRSLQ FLQKRKHRIQTLSPY+H
Sbjct: 61  QMEAER---RLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 113

BLAST of Spg035854 vs. ExPASy TrEMBL
Match: A0A6J1KQP6 (protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.9e-22
Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = 0

Query: 1   METILNCNLDLCLSPPSSS-----------ATADSPHNRVSPTGLPVVDPTELQVRAIIV 60
           ME ILNCNL+LCLSPPSSS           +T+ S HN   PT +P++D TELQ RAIIV
Sbjct: 1   MENILNCNLELCLSPPSSSPSTTATVAAANSTSTSCHNH--PTRVPLLDLTELQARAIIV 60

Query: 61  QATKQMEETRSTPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH 110
           +A  QME  R   R+ +   S   + +SMKSGASP+MRRSLQ FLQKRKHRIQTLSPY+H
Sbjct: 61  RAITQMEAER---RLTTCYISLPTEPMSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115

BLAST of Spg035854 vs. ExPASy TrEMBL
Match: A0A1S3BA64 (protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 65/123 (52.85%), Postives = 81/123 (65.85%), Query Frame = 0

Query: 1   METILNCNLDLCLSPPSSS-------------ATADSPHNRVSPTGLPVVDPTELQVRAI 60
           ME   N NL+LCLSPPSSS             + + S HN ++P G+P  D TE+Q +AI
Sbjct: 1   MEHFPNFNLELCLSPPSSSPSTTTTTTTAAAASNSSSQHNHITPIGVPTPDLTEIQAKAI 60

Query: 61  IVQATKQMEETRSTPRIRSEASSTSIDQLSMKSG-ASPAMRRSLQSFLQKRKHRIQTLSP 110
           IV+AT+QME  R     R    S+S +++ M+SG ASP+MRRSLQ FLQKRK RIQTLSP
Sbjct: 61  IVEATRQMEAERRWTTCR---ISSSAERVWMRSGEASPSMRRSLQRFLQKRKLRIQTLSP 120

BLAST of Spg035854 vs. ExPASy TrEMBL
Match: A0A0A0LX13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.5e-17
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 0

Query: 1   METILNCNLDLCLSPPSSS-----------ATADSPHNRVSPTGLPVVDPTELQVRAIIV 60
           ME + N NL+LCLSPPSSS           + + S  N ++P GL   D TE+Q +AIIV
Sbjct: 1   MEPLSNFNLELCLSPPSSSPSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAKAIIV 60

Query: 61  QATKQMEETRSTPRIRSEASSTSIDQLSMKSG-ASPAMRRSLQSFLQKRKHRIQTLSPYT 110
           QAT+QME  RS  R R+   S+S +++ M +G ASP++RRSLQ FLQKRK RIQTLSPY 
Sbjct: 61  QATRQMEAERS--RWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSPYA 119

BLAST of Spg035854 vs. ExPASy TrEMBL
Match: A0A6J1CG02 (protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.9e-14
Identity = 57/117 (48.72%), Postives = 73/117 (62.39%), Query Frame = 0

Query: 5   LNCNLDLCLSPP------------SSSATADSPHNRVS-PTGLPVVDPTELQVRAIIVQA 64
           L+CNL+LCLSPP            ++++T+D  H  V+   G PV D TELQ RAII+ A
Sbjct: 16  LHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAIIIGA 75

Query: 65  TKQMEETRSTPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYT 109
           T+QMEE ++T R RS    +S            +M+RSLQ FLQKRKHRIQTL+PYT
Sbjct: 76  TRQMEERKTTCRTRSAEEKSS------------SMKRSLQRFLQKRKHRIQTLTPYT 120

BLAST of Spg035854 vs. TAIR 10
Match: AT1G30135.1 (jasmonate-zim-domain protein 8 )

HSP 1 Score: 41.6 bits (96), Expect = 4.8e-04
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 0

Query: 38  DPTELQVRAIIVQATKQMEETRSTPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKR 97
           D T LQ R+II  A+++M+   S+        STS     + +    +M++SLQSFLQKR
Sbjct: 59  DVTHLQARSIISIASREMKTKSSSNGSDPPNKSTSFHHNQLPN-PKASMKKSLQSFLQKR 118

Query: 98  KHRIQTLSPY 108
           K RIQ  SPY
Sbjct: 119 KIRIQATSPY 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895134.13.2e-2663.33protein TIFY 5A-like [Benincasa hispida][more]
XP_022927150.17.9e-2562.07protein TIFY 5A-like [Cucurbita moschata][more]
KAG7019513.11.3e-2461.02Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023520316.13.9e-2461.02protein TIFY 5A-like [Cucurbita pepo subsp. pepo][more]
KAG6583895.15.1e-2461.86Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EN303.8e-2562.07protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1[more]
A0A6J1KQP63.9e-2259.17protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1[more]
A0A1S3BA641.5e-1852.85protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1[more]
A0A0A0LX138.5e-1752.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1[more]
A0A6J1CG023.9e-1448.72protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G30135.14.8e-0442.86jasmonate-zim-domain protein 8 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018467CO/COL/TOC1, conserved sitePFAMPF09425Jas_motifcoord: 87..107
e-value: 2.6E-7
score: 30.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..36
NoneNo IPR availablePANTHERPTHR33077:SF17PROTEIN TIFY 5Bcoord: 36..107
IPR040390TIFY/JAZ familyPANTHERPTHR33077PROTEIN TIFY 4A-RELATED-RELATEDcoord: 36..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035854.1Spg035854.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048583 regulation of response to stimulus