Spg035840 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035840
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold5: 40164008 .. 40170554 (+)
RNA-Seq ExpressionSpg035840
SyntenySpg035840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCAAGAAAGTCTCGACCGCTGTGGGGGGAGACTCAACATCGACGGGAAAAGAGACGGAAACTATCGCCATCCTCTCACCACAAGAAACGACTGCACGCTTGCTGTCAGTCGAGGATGATGTGCGTGAGATTAAAAAAATTCTTGAAATGCTATGTGAGAAATTGGGCTGCAAGTCGGATCAGCAATTAGCCGATCCGCAAGAACATATAATTAGGGAAAGAAGACAGCAAGAACAGCAAAGGGAAGGTTGGAAGACCAGGCAATGGCAAGATAGACAAGCCTTTGAGCAGAAAACATTTCAAGAAGCAGTGTTACCACCAAGATTTCATCAAGAACAGCATGCGGGCTTGCAAGAATTCAACCATAACCCCCTGTTTAGAAGACAACCTGTATGGTCTGAAGATACATCCAGTGAGGAAGAAGACGAACCCGTGGAGTTTCAAATGGGAAGACAAAGAGATCGAAGATTCCCATACCAACAACCTGAGAGTGACTTCAAAATGAAAATAGATATTCCAACTTACAGTGGAAAAATGGAGATTGAAGCATTCTTGGAATGGGTAAGACATGTAGAAAATTTTTTTAACTACATGAATACACCCGACAACAAAAAAGTGAAACTTGTGGCATTGAAACTAAAAGGAAGAGCTCAAGCTTGGTGGGACCAACTAGAAATCAATCGTCAAAGATTTAGAAAAAGACCAATCCGGAGATGGGAAAGAATGAAGAAATTAATGCAAGAAAGGTTTCTACCAGCAAACTTTGAACAAATTTTGTACACTCAATATCAGAATTGCAGACAAGGTAACCACACAGTCATGGAATACACGGAGGAGTTTCACAGATTGGGGGCAAGAACAAATCTTGGAGAAAATCAACAATGTTTGGTGGCTAGGTACAAGAGAGGACTAAGAATGGATATTCAAGAACGGATAGCTTTACAACCTCTAGCTTACCTTAATGAGGCAATTTCAGCGGCAACCACGGTGGAAGAACAAATTGCAAATCGATACAAAAGACAATATACAAGAAGAAATATAGGTGAACCAAGCAATGCGTTTACCAAGAACACAACAACAGCCCCCGAGAAGAATAATGTACAGACTCAAGGAGTGTCATCCAAAGGCAAACAACAAATAGATTTGGGAACAAACAAAGAAACGACTACAAAAAGGGGTGTCAACACATATTCACGACCAACATTAGGGAAATGCTTCCGTTGTAATCAAACCGGACATTTATCTAATGAATGCCCTCAACGAAAGACACTAACTATTGCCGATAATGTTGAATATCAAGAAGAAGATGAAGAAACGGAGCATGAAGAAGACATTGATTATCTTGAACCGGATGAAGGAGATGTATCTTTAGTCATCCAAAGACTCCTACTAGCCCCAAAGATAGATCAAAGTTACCAAAGACACGCTTTATTCAAGACCCGTTGCACAATAAATGGGAAAATTTGCAATGTGATCATCGACAGTGGCAGTACTGAAAATGTAGTGGCAAGTAAGCTGGTTTCTACGTTAAACTTGCCCTTACACCCACATCCAGCTCCATACAAAGTCACTTGGATAAAGAAAGGGGGGGAAGTTCAAGTTACTCATACATGTACCATTCCATTGTCCATTGGAGCAAGCTATAAAGATCAAATAATTTGTGATGTGCTCGATATGGATGCATGTCACATACTCTTGGGTCGGCCATGGCAATATGATATGCAAGCCATTCACAAAGGAAGGGACAACACTTACGAGTTTACATGGATGGGGAAGAAAATAGTGCTCTTACCTATCAATCCTTCAAAGCAAATAAGTACAATTACCAATAAAAAAGGTAACCTTTTTACCCTATCCTCTGGAAAAAAATTTCTTCAAGAAAACCAACTTCCTATACTTGGCTTAGTTATTAAAATTTTTGATAATGTTGATTCTAACATTGCTATTCCAAGTGAAGTACAACTTCTTTTGCAAGATTTTAAAGAAATAGTGGAAACTCCAAATGCATTACCCCCACTCCGTGATATCCAACATTCAATTGATCTCCTTCCAGGAGCAACTCTACCCAACCTCCCACACTACCGAATGAGTCCTAGTGAATACAAATTACTACATGATCAAGTGCAGGATTTGCTGGAAAAAGGGCACATTCAGCCGAGCTTAAGCCCTTGTGCTGTGCCGGCTTTGTTAACTCCAAAGAAAGACGGATCTTGGCGCATGTGTGTGGATAGCCGAGCCATAAACAAGATCACCATAAAATACAGGTTCCCTATCCCACGAATCAATGATCTTCTTGACCAATTAGGTGGGGCAACCATATTTTCAAAGATAGACCTCAAAAGCGGGTACCACCAAATAAGAATTCGACTAGGGGACGAATGGAAGACCGCGTTTAAGACAAATGAAGGACTATTTGAATGGTTGGTCATGCCATTCGGTCTCTCAAATGCCCCAAGTACATTCATGAGACTTATGAACCAGATACTTCAACCTTTTATCAATAAATTTGCAGTAGTTTACTTTGATGACATTCTTATCTATAGCCGAGGATTCCAAGATCATATCAGCCATATTAGAACTATATTTTCTACTCTAAAGAAGCATGCCTTAGTTATTAATTTAAAGAAATGCTTATTTGTTACATAAGAAATATCCTTCCTAGGTTATATAATCGGGCACAATGAGATAAAGATGGATCCTATAAAAATTAAAGCTATTCAGGAATGGGCTGAACCTAAAACAATTAAAGAAATCCAAAGCTTCCTCGGTTTAGCCTCATTCTATAGGAAATTCATCAAAAACTTTAGTACCATTGTAGCTCCTTTAACAAATTGTTTAAAGAAGGGTCATTTTTCTTGGGGACAAAACCCAAATAGAGAGTTTCCAAACAATAAAAGAAAAAATCATGACCAGCCCTGTTCTAGCACTTCCAAATTTTGAATTACCCTTTGAAGTAGTAGTAGATGCGTCCGGAATTGGTATAGGGGTAGTCTTGTCCCAAAACAATCATCCTATCAAATTCTTTAGTGAAAAATTGAGCCCTTCAAGACAAAAGTGGTCCACTTATGAACAAGAACTTTATTCTCTTATTAGAGCACTTAAACAATGGGAACATTATTTACTAAGCAAAGAGTTTGTTTTGTTCACTGACCACTTCTCTCTTAAGTTCTTACACTCACAAAAATCTATTAGTAGGATGCATGCTAGATGGTTGTCCTTTTTACAACGCTTTGATTTTGTTATTAAACATACTTCGGGTATTACTAACAAAGTGGCAGATGCTCTAAGTCGTAAAACCAACCTTCTAACAATCTTAAAGGGCGAAATCATAGCTCTAGACAGCCTTCCGGACAGCTACTTGGATGACAAAGATTTCGGGCACATTTGGAAACTCTGTACAGAACATCAACCAGCTGGAGACTTCCATTTAGTCGATGGTTTTTTATTTAAGGATAACACCCTGTGCATACCATACACATCTCTACGGAAAGCCTTGCTCCGAGAGGCGCATGCTAGGGGATTGGTCGGCCATCTGGGAAAGGATAAAACACTCGATATTCTGGAAAAACGTTTTTATTGGCCCCAACTCAGAAAAGACGTACAAAATTATGTCAACAGATGCTATATTTGCCAAATATCCAAAGGTACTTCCCAAAATACAGGGTCATACAACCCTCTGCCAATCCCAGAAAATATTTGGGAAGACCTTTCCATGGATTTTATCCTTGGATTGCCTCGAACACAACGTGGCTTCAATTCGGTATTGGTCGTGGTGGATCGATACAGCAAGATGACTCACTTTCTTGCTTGTAAAAAGACTACAGGGAAGTCCCCATTTGAATTGGTCTATACTAAACTTCCTCGATTGACTATATATCTAACCAATATTCCATCTTCTATTGATCTTTGTGCGGAGGCTGAAGAAATGGCAACAAGAATCCAGGAGCTTCATAAACAAGTGCATGAGCATATAGAGCAAGAAACAGCAAAATACAAAGCAGCCGCGAACAAAAAGAGAAGATTTAAAGCATTCAATATCGGAGATTTAGTCATGATACACTTGCGGAAGAGTAGATTTCAAGTCGGCACTTACAACAAGCTCAAAAGCAAGAAAATTGGTCCTTTCCCGATCTTGGACAAATTTGGAGGCAATGCCTACAAAATTCAACTTCCTCCAGAATATAATATCAACCCAACTTTCAACATTTCGGATATCTTCCCTTATCATCCTCCAGATGAATTTTTGCTGGCAACCTAACTCGAGGACGAGTTAATTTTTCTTGGGCGGGGAAATTTGATGTAGCCTTTTATTGTAATTTCTCCCGTTAGTCTGTTAGCCCTCATGTGCACGGCATATGCAAGTTAGTTTCTGTTTTAGTCTCTTTGTTAGCCTATATAAAGGCCAGTTTGCTGCCATCCTAAACATAATAATATTACTAATTGAATTTTGAGATTCTCGGCTACATCATATTGTTTGAAACTTGAGTGCATCAAGTTGGTATCAAAGCGCCTGAATCCAAGGCCTTCATGAAATTGGATTTTCTTTCTCTCATGGAGGCGGAAGCTTCAAACGTGCAGAGAACCTATGATAGACGCTTACAGTTGGTTGAAACATCGGAGAAAGAAATCAAGAAGAGTGTGAATGACATTCAACCGTCCATTAGACAACTTACACAACAAATGAGTATGCTGGCAACAAATCAATAAAAGTTGGGAGAATAGAGTAGCAAAAAAACTCAAGAAAATCAAGAAAGATTGGTGGCTGGAGCAAGAAACCTCCAAAAAAAAAAAAACAGAAATGATGTTGCTGCCTCCCCCCCCCCCTCCCGAAGAATAGCCAAAGCTGAATTTGGAAGAATCCCTGAAGCATTCATACCCGGTTTTACAACACAAGACTCAGATTCATCACGTGAAATGAAAAATTTGATTGCATTCATCATCAAGATCAACAACTAAGAGTTCCAAGACGGCAACAAGATGAACACTCTGAATACAAAATGAAGGTAGATCTTCCAAGTTTTAATGGAAGGATGGACGTGGAAAAAATTTTGGATGGAGTGAAAGTGTAGAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATATGTTAGCACTCCGAAGGAAAAGAAAGTAAAACTAGTGGCTTTCAAACTTCAAAGTGGAGCCTCGGCTTGGTTGGACCACAGAATAATATGAGGTATTATGAGAAGCAACCTATCAAAAAGTGGCCAAAAATGTTGCGGTTAATGAAGAAAAGGTTCTTCCCTCTTAACTACGAGCAAATTTTATACAATCGGTACCAACATTGCAAACAAGGAGCAAGATCCATTCTTGACTACGCTGAAGAGTTTCATTGATTGGAGGCTCGAAATAATTTGCTAGAAACAGAACAACAACAAATTTCAAGATTTGTTAATGGTCTTTGAGATGATATCAAAGAGATTGTAAACCTACATCCTTTAGCATAACTCGCTGATGTCATCACTTTAGCAACAAAAATTGAGGAGAATGATGAGGCAAAATCGACAAGAACTTATGAGAGAAGAAATACTGGGGATAAACAACAACAAATTCAAAGATCAATGGGTGAAGCTAGTAAAAATCTTATCCAAGGAAGTTCTTGTACGTCTAGTTCACAATCGAAAAAGGAGGATATCCCGATAAAAAAACTCCTCCAGTAAAGGTTTATATACTCCTATTGTTAAAAAGAATTCTAACCCTTATAACAGGCCTACTCTTGGTAAATGTTTTAGGTGTGGACAGCAAGGGCATCTTTCAAATGAATGTCCACAAAGAAAAACTTTGGCAATTAGAGAAGTCAACGAAGAAGATGTGGAGGATCAAGAATTCAAAGAGGAAGTAGAAGAGGAATATGCCAAAGCCAATGAAGGAGAACAACTTTCTTGTGTTCTCCAACGAGTACTTCTAACTCCAAAAACTGATTCTAACCCTAAAGACACTTTTTCGCACTAGATGCATCATTAATGGAAAGATTTGCCAAGTTATAATTGATAGTGGGAGTAGCAAAAATATAGTATCCAAGAAACTCATTAATGTCCTCAATCTTAAGATTGGACCACATCCTAATCCTTGTAAGGTTAGCTTGATTAGGGGGAGGGGGGAACAACAGTTAATGAAATATGGACAATACCGTTGTCCATAGGAAATTCTTATAAAGATCAAATAGTTTGTATAGACATGTGAAATAATGTTTGGGAAGTCATCAACATCGGGAATTCAGACATGTATAATGTAAACTCATACTTATAGAAAGAAAATGAAAACAACCCATTACCAAGTTGAATGATTCTAATATGAGGGACAAAGAGAAAAATGGTATGATGAGGAGGTGTTCATAGAGCACGAGGTGTTCTCCATTAGAAAACTACCTTGTGGAAGGAAGTTGGCTGTTGAGGAAAAGGAGGGCCAGAGGGTGGCTAGATTAGATTTGGACCTTGGGTCAGCAGCTTGGCTAAGTAATCTGCCTTTTGGCCATGGCGAGAAGCATAAATGTGGTAGGCTTCGGGGAAAAGAAGGCTAG

mRNA sequence

ATGGCATCCAAGAAAGTCTCGACCGCTGTGGGGGGAGACTCAACATCGACGGGAAAAGAGACGGAAACTATCGCCATCCTCTCACCACAAGAAACGACTGCACGCTTGCTGTCAGTCGAGGATGATGTGCGTGAGATTAAAAAAATTCTTGAAATGCTATGTGAGAAATTGGGCTGCAAGTCGGATCAGCAATTAGCCGATCCGCAAGAACATATAATTAGGGAAAGAAGACAGCAAGAACAGCAAAGGGAAGGTTGGAAGACCAGGCAATGGCAAGATAGACAAGCCTTTGAGCAGAAAACATTTCAAGAAGCAGTGTTACCACCAAGATTTCATCAAGAACAGCATGCGGGCTTGCAAGAATTCAACCATAACCCCCTGTTTAGAAGACAACCTGTATGGTCTGAAGATACATCCATGCATCAAGTTGGTATCAAAGCGCCTGAATCCAAGGCCTTCATGAAATTGGATTTTCTTTCTCTCATGGAGGCGGAAGCTTCAAACGTGCAGAGAACCTATGATAGACGCTTACAGTTGGTTGAAACATCGGAGAAAGAAATCAAGAAGAGTGTGAATGACATTCAACCGTCCATTAGACAACTTACACAACAAATGACAACAAAAATTGAGGAGAATGATGAGGCAAAATCGACAAGAACTTATGAGAGAAGAAATACTGGGGATAAACAACAACAAATTCAAAGATCAATGGGTGAAGCTAGTAAAAATCTTATCCAAGGAAGTTCTTGTACATGCATCATTAATGGAAAGATTTGCCAAGTTATAATTGATAGTGGGAGTAGCAAAAATATAGTATCCAAGAAACTCATTAATGTCCTCAATCTTAAGATTGGACCACATCCTAATCCTTGTAAGGGACAAAGAGAAAAATGGTATGATGAGGAGGTGTTCATAGAGCACGAGGTGTTCTCCATTAGAAAACTACCTTGTGGAAGGAAGTTGGCTGTTGAGGAAAAGGAGGGCCAGAGGGTGGCTAGATTAGATTTGGACCTTGGGTCAGCAGCTTGGCTAAGTAATCTGCCTTTTGGCCATGGCGAGAAGCATAAATGTGGTAGGCTTCGGGGAAAAGAAGGCTAG

Coding sequence (CDS)

ATGGCATCCAAGAAAGTCTCGACCGCTGTGGGGGGAGACTCAACATCGACGGGAAAAGAGACGGAAACTATCGCCATCCTCTCACCACAAGAAACGACTGCACGCTTGCTGTCAGTCGAGGATGATGTGCGTGAGATTAAAAAAATTCTTGAAATGCTATGTGAGAAATTGGGCTGCAAGTCGGATCAGCAATTAGCCGATCCGCAAGAACATATAATTAGGGAAAGAAGACAGCAAGAACAGCAAAGGGAAGGTTGGAAGACCAGGCAATGGCAAGATAGACAAGCCTTTGAGCAGAAAACATTTCAAGAAGCAGTGTTACCACCAAGATTTCATCAAGAACAGCATGCGGGCTTGCAAGAATTCAACCATAACCCCCTGTTTAGAAGACAACCTGTATGGTCTGAAGATACATCCATGCATCAAGTTGGTATCAAAGCGCCTGAATCCAAGGCCTTCATGAAATTGGATTTTCTTTCTCTCATGGAGGCGGAAGCTTCAAACGTGCAGAGAACCTATGATAGACGCTTACAGTTGGTTGAAACATCGGAGAAAGAAATCAAGAAGAGTGTGAATGACATTCAACCGTCCATTAGACAACTTACACAACAAATGACAACAAAAATTGAGGAGAATGATGAGGCAAAATCGACAAGAACTTATGAGAGAAGAAATACTGGGGATAAACAACAACAAATTCAAAGATCAATGGGTGAAGCTAGTAAAAATCTTATCCAAGGAAGTTCTTGTACATGCATCATTAATGGAAAGATTTGCCAAGTTATAATTGATAGTGGGAGTAGCAAAAATATAGTATCCAAGAAACTCATTAATGTCCTCAATCTTAAGATTGGACCACATCCTAATCCTTGTAAGGGACAAAGAGAAAAATGGTATGATGAGGAGGTGTTCATAGAGCACGAGGTGTTCTCCATTAGAAAACTACCTTGTGGAAGGAAGTTGGCTGTTGAGGAAAAGGAGGGCCAGAGGGTGGCTAGATTAGATTTGGACCTTGGGTCAGCAGCTTGGCTAAGTAATCTGCCTTTTGGCCATGGCGAGAAGCATAAATGTGGTAGGCTTCGGGGAAAAGAAGGCTAG

Protein sequence

MASKKVSTAVGGDSTSTGKETETIAILSPQETTARLLSVEDDVREIKKILEMLCEKLGCKSDQQLADPQEHIIRERRQQEQQREGWKTRQWQDRQAFEQKTFQEAVLPPRFHQEQHAGLQEFNHNPLFRRQPVWSEDTSMHQVGIKAPESKAFMKLDFLSLMEAEASNVQRTYDRRLQLVETSEKEIKKSVNDIQPSIRQLTQQMTTKIEENDEAKSTRTYERRNTGDKQQQIQRSMGEASKNLIQGSSCTCIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCKGQREKWYDEEVFIEHEVFSIRKLPCGRKLAVEEKEGQRVARLDLDLGSAAWLSNLPFGHGEKHKCGRLRGKEG
Homology
[Close]
BLAST of Spg035840 vs. NCBI nr
Match: KAA0066202.1 (Asp_protease_2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 5.0e-07
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0 

Query: 218 TRTYERRNTGDKQQQIQRSMG--EASKNLIQGSSCTCIINGKICQVIIDSGSSKNIVSKK 277
           +RT  + +T +K ++I+   G  E  K +  G+ CT  INGK+C VIIDSGSS+N V+K+
Sbjct: 151 SRTTNQPSTSEKGKEIETQEGVKEKKKEVATGTKCT--INGKVCGVIIDSGSSENFVAKR 210

Query: 278 LINVLNLKIGPHPNPCK 293
           L+  LNLK   HPNP K
Sbjct: 211 LVTTLNLKAEAHPNPYK 225

[Close]
BLAST of Spg035840 vs. NCBI nr
Match: KAA0054760.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 6.5e-07
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 252 CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK 293
           C INGK+C  IIDSGSS+N+V+KKL+  LNLK+ PHPNP K
Sbjct: 32  CTINGKVCDEIIDSGSSENVVAKKLVTALNLKVEPHPNPYK 72

[Close]
BLAST of Spg035840 vs. NCBI nr
Match: KAA0047078.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK05079.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-06
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 252 CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK 293
           C INGK+C VIID+GSS+N V+KKL+  LNLK  PHPNP K
Sbjct: 487 CTINGKVCDVIIDNGSSENFVAKKLVTALNLKAEPHPNPYK 527

[Close]
BLAST of Spg035840 vs. NCBI nr
Match: XP_031741035.1 (uncharacterized protein LOC116403692 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 5.5e-06
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 252 CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK 293
           C ING++C VIIDSGSS+N V+KKL+ VLNLK   HPNP K
Sbjct: 483 CTINGRVCDVIIDSGSSENFVAKKLVTVLNLKAEAHPNPYK 523

[Close]
BLAST of Spg035840 vs. NCBI nr
Match: KAA0062943.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-05
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 252 CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK 293
           C I+GK+C VIIDSGSS+N V++KL+  LNLKI PHP+P K
Sbjct: 335 CTISGKVCDVIIDSGSSENFVARKLVASLNLKIDPHPDPYK 375

[Close]
BLAST of Spg035840 vs. ExPASy TrEMBL
Match: A0A5A7VCY1 (Asp_protease_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002190 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-07
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0 

Query: 218 TRTYERRNTGDKQQQIQRSMG--EASKNLIQGSSCTCIINGKICQVIIDSGSSKNIVSKK 277
           +RT  + +T +K ++I+   G  E  K +  G+ CT  INGK+C VIIDSGSS+N V+K+
Sbjct: 151 SRTTNQPSTSEKGKEIETQEGVKEKKKEVATGTKCT--INGKVCGVIIDSGSSENFVAKR 210

Query: 278 LINVLNLKIGPHPNPCK 293
           L+  LNLK   HPNP K
Sbjct: 211 LVTTLNLKAEAHPNPYK 225

[Close]
BLAST of Spg035840 vs. ExPASy TrEMBL
Match: A0A5A7UHK1 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00380 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-07
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 252 CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK 293
           C INGK+C  IIDSGSS+N+V+KKL+  LNLK+ PHPNP K
Sbjct: 32  CTINGKVCDEIIDSGSSENVVAKKLVTALNLKVEPHPNPYK 72

[Close]
BLAST of Spg035840 vs. ExPASy TrEMBL
Match: A0A5D3C3X9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00540 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.2e-07
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 252 CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK 293
           C INGK+C VIID+GSS+N V+KKL+  LNLK  PHPNP K
Sbjct: 487 CTINGKVCDVIIDNGSSENFVAKKLVTALNLKAEPHPNPYK 527

[Close]
BLAST of Spg035840 vs. ExPASy TrEMBL
Match: A0A5A7V4G7 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00370 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.8e-06
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 252 CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK 293
           C I+GK+C VIIDSGSS+N V++KL+  LNLKI PHP+P K
Sbjct: 335 CTISGKVCDVIIDSGSSENFVARKLVASLNLKIDPHPDPYK 375

[Close]
BLAST of Spg035840 vs. ExPASy TrEMBL
Match: A0A5D3DGR0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00870 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-05
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 252 CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK 293
           C I GK+C VIIDSGSS+N VSKKL+  LNLK  PH  P K
Sbjct: 467 CTIQGKVCNVIIDSGSSENFVSKKLVTALNLKTQPHEKPYK 507

The following BLAST results are available for this feature:
BLAST of Spg035840 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066202.15.0e-0748.05Asp_protease_2 domain-containing protein [Cucumis melo var. makuwa][more]
KAA0054760.16.5e-0768.29DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0047078.11.9e-0668.29reverse transcriptase [Cucumis melo var. makuwa] >TYK05079.1 reverse transcripta... [more]
XP_031741035.15.5e-0668.29uncharacterized protein LOC116403692 [Cucumis sativus][more]
KAA0062943.11.6e-0565.85Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
BLAST of Spg035840 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg035840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VCY12.4e-0748.05Asp_protease_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7UHK13.2e-0768.29DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3C3X99.2e-0768.29Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13... [more]
A0A5A7V4G77.8e-0665.85Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5D3DGR03.9e-0565.85Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
BLAST of Spg035840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 198..218
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..229
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..230
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 251..290
e-value: 2.22203E-6
score: 43.4792
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 229..296
e-value: 2.5E-5
score: 25.9
IPR001969Aspartic peptidase, active sitePROSITEPS00141ASP_PROTEASEcoord: 261..272

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035840.1Spg035840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding