Spg035826 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035826
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold5: 40440545 .. 40441832 (+)
RNA-Seq ExpressionSpg035826
SyntenySpg035826
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACTACAACCGTCTGCCGCTGCCGCTTGGAAACCAAAAGTCTAGTTGGTTGCTTGGGTCGTCTCTCGCTTACCATAGTCATCCCCCGTCAATGGAACGAACGTAAGATTCCTAGATCTAAGAATAATTCCTAAATCACAAATCCAGGTTAGTGGGAAAGGCATTTTTACGGTGAAAAGTGCTTATAACCAGGCCGTTAACATTGGTGCTAAGGAAAAGCTACTTCTTCGAATTGTGAATGATCCGAAGCCATGTGGAAAGCTCTTTGGAACCTTAATATTTATCCTAGAGCTAAAATCACATTGTGGAAGATAATTAACAATGCTCTCCCAACGAATCTTAACATATCTAAAAGAGGGATTAATTCTAATTTGAGGTGTTTTTTGTGCAGGGGAGGCGTGGAGTCAACCGAGCACCTTTTTTGGGTTGTAAGGTATCTAAAAAAGTTTGGAGAGATTTTCTGCCCAACTCATGGAGGCTCTTTCCGTGTAACAGGGACAATTGGAGTGCTATGGATTATTGGAGTTTCATGTGGAAAAAGATGAGTAAAGAGGAGCTCAGTAAAGCTGCCATTCTTATGTGGACTCTTTGGAATTCAAGAAACAGATGTAGAATTAACAACCAACAGCCAGATTCCAATCAGATTGCAAGATCGCTAGCAAATTTCTTCGAGGATTTCGATAAAGTGAATAGACCGTACCTGGAGCCATCCAGTTTGAAGAGCCAGTCGAGTCACCCTTTATGGAGGCCGCCGGACCGTGGATGGTGGAAGCTCAACTCCGATGCCGCCTGGAGCAATTCCGCAAGGAGAGGAGGCGTGGGATGGGTGCTTTGCGACTCCACCGGATCTTTAGTTGGAGCAGGTTGCAGCCGAATTACCCGGAGCTGGCCAATCAAGGCCCTTGAAGGCGAAGCTATTCGCGTTGGCTTGAGCGCGTTTCTCCGTGGGACGAGTGAAGGCCACCTCAGACCTCCGTTAAAGGTCGAATCAGATGCCCTCAGTGTCGGGAAAGTGTTAGCGGGAGAGGAAGAAGATCTTTCGGAATCAGGCCTGATCTTCACTGAGATTTTAGAGATGTCTAGGGGAGAAAGAATCGATTTTGAGTTCTGTAGTAGAAGTACCAATGTTTTGGGCCATCAGCTTGCGCATGTAGCAACTGAATGGGGGGATTTTTCTGTGTTTTTTTGCTCTTCTTCCCCTGTTCTGGAAGATAGAGAGGTTGGTTGGGATGAGAGTATCCCTCATTGGTTTGTTTCTTTATTATCTGTGGACGTTGGTAGTTGA

mRNA sequence

ATGTTACTACAACCGTCTGCCGCTGCCGCTTGGAAACCAAAAGTTAGTGGGAAAGGCATTTTTACGGTGAAAAGTGCTTATAACCAGGCCGTTAACATTGGTGCTAAGGAAAAGCTACTTCTTCGAATTGTGAATGATCCGAAGCCATGGGAGGCGTGGAGTCAACCGAGCACCTTTTTTGGGTTGGACAATTGGAGTGCTATGGATTATTGGAGTTTCATGTGGAAAAAGATGAGTAAAGAGGAGCTCAGTAAAGCTGCCATTCTTATGTGGACTCTTTGGAATTCAAGAAACAGATGTAGAATTAACAACCAACAGCCAGATTCCAATCAGATTGCAAGATCGCTAGCAAATTTCTTCGAGGATTTCGATAAAGTGAATAGACCGTACCTGGAGCCATCCAGTTTGAAGAGCCAGTCGAGTCACCCTTTATGGAGGCCGCCGGACCGTGGATGGTGGAAGCTCAACTCCGATGCCGCCTGGAGCAATTCCGCAAGGAGAGGAGGCGTGGGATGGGTGCTTTGCGACTCCACCGGATCTTTAGTTGGAGCAGGTTGCAGCCGAATTACCCGGAGCTGGCCAATCAAGGCCCTTGAAGGCGAAGCTATTCGCGTTGGCTTGAGCGCGTTTCTCCGTGGGACGAGTGAAGGCCACCTCAGACCTCCGTTAAAGGTCGAATCAGATGCCCTCAGTGTCGGGAAAGTGTTAGCGGGAGAGGAAGAAGATCTTTCGGAATCAGGCCTGATCTTCACTGAGATTTTAGAGATGTCTAGGGGAGAAAGAATCGATTTTGAGTTCTGTAGTAGAAGTACCAATGTTTTGGGCCATCAGCTTGCGCATGTAGCAACTGAATGGGGGGATTTTTCTGTGTTTTTTTGCTCTTCTTCCCCTGTTCTGGAAGATAGAGAGGTTGGTTGGGATGAGAGTATCCCTCATTGGTTTGTTTCTTTATTATCTGTGGACGTTGGTAGTTGA

Coding sequence (CDS)

ATGTTACTACAACCGTCTGCCGCTGCCGCTTGGAAACCAAAAGTTAGTGGGAAAGGCATTTTTACGGTGAAAAGTGCTTATAACCAGGCCGTTAACATTGGTGCTAAGGAAAAGCTACTTCTTCGAATTGTGAATGATCCGAAGCCATGGGAGGCGTGGAGTCAACCGAGCACCTTTTTTGGGTTGGACAATTGGAGTGCTATGGATTATTGGAGTTTCATGTGGAAAAAGATGAGTAAAGAGGAGCTCAGTAAAGCTGCCATTCTTATGTGGACTCTTTGGAATTCAAGAAACAGATGTAGAATTAACAACCAACAGCCAGATTCCAATCAGATTGCAAGATCGCTAGCAAATTTCTTCGAGGATTTCGATAAAGTGAATAGACCGTACCTGGAGCCATCCAGTTTGAAGAGCCAGTCGAGTCACCCTTTATGGAGGCCGCCGGACCGTGGATGGTGGAAGCTCAACTCCGATGCCGCCTGGAGCAATTCCGCAAGGAGAGGAGGCGTGGGATGGGTGCTTTGCGACTCCACCGGATCTTTAGTTGGAGCAGGTTGCAGCCGAATTACCCGGAGCTGGCCAATCAAGGCCCTTGAAGGCGAAGCTATTCGCGTTGGCTTGAGCGCGTTTCTCCGTGGGACGAGTGAAGGCCACCTCAGACCTCCGTTAAAGGTCGAATCAGATGCCCTCAGTGTCGGGAAAGTGTTAGCGGGAGAGGAAGAAGATCTTTCGGAATCAGGCCTGATCTTCACTGAGATTTTAGAGATGTCTAGGGGAGAAAGAATCGATTTTGAGTTCTGTAGTAGAAGTACCAATGTTTTGGGCCATCAGCTTGCGCATGTAGCAACTGAATGGGGGGATTTTTCTGTGTTTTTTTGCTCTTCTTCCCCTGTTCTGGAAGATAGAGAGGTTGGTTGGGATGAGAGTATCCCTCATTGGTTTGTTTCTTTATTATCTGTGGACGTTGGTAGTTGA

Protein sequence

MLLQPSAAAAWKPKVSGKGIFTVKSAYNQAVNIGAKEKLLLRIVNDPKPWEAWSQPSTFFGLDNWSAMDYWSFMWKKMSKEELSKAAILMWTLWNSRNRCRINNQQPDSNQIARSLANFFEDFDKVNRPYLEPSSLKSQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLCDSTGSLVGAGCSRITRSWPIKALEGEAIRVGLSAFLRGTSEGHLRPPLKVESDALSVGKVLAGEEEDLSESGLIFTEILEMSRGERIDFEFCSRSTNVLGHQLAHVATEWGDFSVFFCSSSPVLEDREVGWDESIPHWFVSLLSVDVGS
Homology
BLAST of Spg035826 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-17
Identity = 75/245 (30.61%), Postives = 112/245 (45.71%), Query Frame = 0

Query: 74  MWKKMSKEELSKAAILMWTLWNSRNRCRINNQQPDSNQIARSLANFFEDFDKVNRPYLEP 133
           M  K S E+L    I  W +WN RN      +    + + + L  F  +       Y   
Sbjct: 1   MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTE-----SSYQSE 60

Query: 134 SSL----KSQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLCDSTGSLVGAGCSRI 193
           +SL    K+ ++   W PP    W LN+DA+WS+S  RGG+GW++    G +V AG   +
Sbjct: 61  TSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFV 120

Query: 194 TRSWPIKALEGEAIRVGLSAFLRGTSEGHLRPPLKVESDALSVGKVLAGEEEDLSESGLI 253
                +K LE  AI  GL      T+ G LR PL +E+D+  V  +L  + EDL+++G +
Sbjct: 121 EACNNVKLLEASAILEGLRNL---TNLGVLR-PLHIETDSAEVESLLNRKREDLTKTGWV 180

Query: 254 FTEILEMSRG-ERIDFEFCSRSTNVLGHQLAHVATEWGDFSVFFCSSSPVLEDREVGWDE 313
             EIL +    E + F    R TN   H LA  A+              VL +  + W +
Sbjct: 181 VEEILNLRDSCEILAFAKVGRETNGCAHSLAQRAS--------------VLRESMI-WVD 221

BLAST of Spg035826 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 4.7e-17
Identity = 62/193 (32.12%), Postives = 94/193 (48.70%), Query Frame = 0

Query: 64  NWSAMDYWSFMWKKMSKEELSKAAILMWTLWNSRNRCRINNQQPDSNQIARSLANFF-ED 123
           +W+  D W+++   +S EE++ + ++ W +W SRNR     +  D  Q+ RS+  F   +
Sbjct: 12  HWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSN 71

Query: 124 FDK-----------VNRPYLEPSSLKSQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVG 183
            DK            N  YL             W  P    WKLN+DA+WS     GG+G
Sbjct: 72  IDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIG 131

Query: 184 WVLCDSTGSLVGAGCSRITRSWPIKALEGEAIRVGLSAFLRGTSEGHLRPPLKVESDALS 243
           W+LCD  G +V AG  +I     I ALE   I  GL  F+   S    R P+ +ESD++ 
Sbjct: 132 WILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQ-FINMQS----RSPIYLESDSVE 191

Query: 244 VGKVLAGEEEDLS 245
           V +++  E+ DL+
Sbjct: 192 VIRLMKKEDVDLT 199

BLAST of Spg035826 vs. NCBI nr
Match: XP_015388122.1 (uncharacterized protein LOC107178012 [Citrus sinensis] >XP_024041306.1 uncharacterized protein LOC112098894 [Citrus clementina])

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-16
Identity = 66/244 (27.05%), Postives = 117/244 (47.95%), Query Frame = 0

Query: 76  KKMSKEELSKAAILMWTLWNSRNRCRINNQQPDSN-QIARSLANFFEDFDKVNRPYLEPS 135
           +K  K+EL    +L WT+W S+N     N++ DS   IAR+ AN  + F ++ +P+ +  
Sbjct: 9   RKNGKKELELIVVLCWTIWYSQNLFIFENKREDSQLSIARAEAN-MDSFKRIKKPFSKIL 68

Query: 136 SLKSQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLCDSTGSLVGAGCSRITRSWP 195
             + ++   +W PP  GW+K+N DAA +   +  G+G ++ +S G +V A   +      
Sbjct: 69  EKQQRNRKQVWNPPPSGWFKINVDAAMNVKDQMAGLGVIIRNSKGEVVAAAVQKSCFQLS 128

Query: 196 IKALEGEAIRVGLSAFLRGTSEGHLRPPLKVESDALSVGKVLAGEEEDLSESGLIFTEIL 255
              +E EA+ +G+ +  R  +E  L   + +E+D+  V  +   ++  ++E+  I  +I 
Sbjct: 129 STHMEAEAVILGIKSAQR--AEFSL---MIIETDSQEVVDLTLSKKVSITETSWIIADIQ 188

Query: 256 E-MSRGERIDFEFCSRSTNVLGHQLAHVATEWGDFSVFFCSSSPVLEDREVGWDESIPHW 315
           E +    +   ++  R  NV  H LA  A E+               +  V WD S P  
Sbjct: 189 ESIQSSNQFSIQYTPRECNVTAHDLAKKALEF---------------ENSVFWDGSFPPQ 231

Query: 316 FVSL 318
            VSL
Sbjct: 249 IVSL 231

BLAST of Spg035826 vs. NCBI nr
Match: XP_006487889.1 (uncharacterized protein LOC102617714 [Citrus sinensis])

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-16
Identity = 76/301 (25.25%), Postives = 138/301 (45.85%), Query Frame = 0

Query: 3    LQPSAAAAWKPKVSGKGIFTVKSAYNQAVNIGAKEKLLLRIVNDPK-PWEAWSQPSTFFG 62
            L P+A+  W+ K+ G  I             G K + ++  + D K   + W        
Sbjct: 942  LLPTASNLWRRKIVGSPI---------CRRCGVKNEDVIHALLDCKVAKKVWRNAGCAEE 1001

Query: 63   LDNWSAMDYWSFM---WKKMSKEELSKAAILMWTLWNSRNRCRINNQQPDSN-QIARSLA 122
            ++     D  + +    +K  K+EL    +L WT+W S+N     N++ DS   IAR+ A
Sbjct: 1002 IEKLVQQDLMAVLVEIQRKKGKKELELIVVLCWTIWYSQNLFIFENKREDSQLSIARAEA 1061

Query: 123  NFFEDFDKVNRPYLEPSSLKSQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLCDS 182
            N  + F ++ +P+ +    + ++   +W PP  GW+K+N DAA +   +  G+G ++ +S
Sbjct: 1062 N-MDSFKRIKKPFSKILEKQQRNRKQVWNPPPSGWFKINVDAAVNVKDQIAGLGVIIRNS 1121

Query: 183  TGSLVGAGCSRITRSWPIKALEGEAIRVGLSAFLRGTSEGHLRPPLKVESDALSVGKVLA 242
             G +V A   R         +E EA+ +G+ +  R         P+ +E+D+  V  +  
Sbjct: 1122 NGEVVAAAIQRSFFQLSSTHMEAEAVILGIKSAQRAGFS-----PMIIETDSQEVVDLTL 1181

Query: 243  GEEEDLSESGLIFTEILE-MSRGERIDFEFCSRSTNVLGHQLAHVATEWGDFSVFFCSSS 298
             ++  + E+  I  +I E +    +   ++  R  NV  H LA  A E+ + SVF+  S 
Sbjct: 1182 SKKVRIIETSWIIADIQESIQSSNQFSIQYTPRECNVTAHDLAKKALEF-ENSVFWEGSF 1226

BLAST of Spg035826 vs. NCBI nr
Match: XP_021838584.1 (uncharacterized protein LOC110778326 [Spinacia oleracea])

HSP 1 Score: 97.4 bits (241), Expect = 2.3e-16
Identity = 64/249 (25.70%), Postives = 113/249 (45.38%), Query Frame = 0

Query: 36   KEKLLLRIVNDPKPWEAWSQPSTFFGLDNWSAMDYWSFMWK---KMSKEELSKAAILMWT 95
            +E     +V  P   E W +      ++  + +D+  ++ +   K S++ + + A+L W 
Sbjct: 806  EENTFHALVKCPTAMEVWEEAGLEGVVEGPTCLDFSVWLGELTDKRSRDVVEQVAVLAWF 865

Query: 96   LWNSRNRCRINNQQPDSNQIARSLANFFEDFDKVNRPYLEPSSLKSQSSHPLWRPPDRGW 155
            +W  RN+ R+  +   S ++  S     + + ++   ++  SS   +     W PPD GW
Sbjct: 866  IWFERNKVRLGGEARKSCEVVSSAMGLLQAYHEMEGTHIRSSSTVMKRDSVKWYPPDEGW 925

Query: 156  WKLNSDAAWSNSARRGGVGWVLCDSTGSLVGAGCSRITRSWPIKALEGEAIRVGLSAFLR 215
             K+NSDAA        G+G V+ D  G +  A C ++   WP+  +E +AI +GL   L+
Sbjct: 926  LKINSDAALYGD-EGCGMGVVVRDHEGGVRRAACQQVKHQWPVDIVEAKAIILGLQIALQ 985

Query: 216  GTSEGHLRPPLKVESDALSVGKVLAGEEEDLSESGLIFTEILEM-SRGERIDFEFCSRST 275
               +  +     VESD L +   L     + S  G+   EIL + S  + + F    R  
Sbjct: 986  CHEKAVI-----VESDNLPIITKLKARNPEGSYLGVTLREILRLCSLFDFVSFSHVYREA 1045

Query: 276  NVLGHQLAH 281
            N   H +AH
Sbjct: 1046 NEAAHIMAH 1048

BLAST of Spg035826 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.0e-18
Identity = 75/245 (30.61%), Postives = 112/245 (45.71%), Query Frame = 0

Query: 74  MWKKMSKEELSKAAILMWTLWNSRNRCRINNQQPDSNQIARSLANFFEDFDKVNRPYLEP 133
           M  K S E+L    I  W +WN RN      +    + + + L  F  +       Y   
Sbjct: 1   MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTE-----SSYQSE 60

Query: 134 SSL----KSQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLCDSTGSLVGAGCSRI 193
           +SL    K+ ++   W PP    W LN+DA+WS+S  RGG+GW++    G +V AG   +
Sbjct: 61  TSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFV 120

Query: 194 TRSWPIKALEGEAIRVGLSAFLRGTSEGHLRPPLKVESDALSVGKVLAGEEEDLSESGLI 253
                +K LE  AI  GL      T+ G LR PL +E+D+  V  +L  + EDL+++G +
Sbjct: 121 EACNNVKLLEASAILEGLRNL---TNLGVLR-PLHIETDSAEVESLLNRKREDLTKTGWV 180

Query: 254 FTEILEMSRG-ERIDFEFCSRSTNVLGHQLAHVATEWGDFSVFFCSSSPVLEDREVGWDE 313
             EIL +    E + F    R TN   H LA  A+              VL +  + W +
Sbjct: 181 VEEILNLRDSCEILAFAKVGRETNGCAHSLAQRAS--------------VLRESMI-WVD 221

BLAST of Spg035826 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-17
Identity = 62/193 (32.12%), Postives = 94/193 (48.70%), Query Frame = 0

Query: 64  NWSAMDYWSFMWKKMSKEELSKAAILMWTLWNSRNRCRINNQQPDSNQIARSLANFF-ED 123
           +W+  D W+++   +S EE++ + ++ W +W SRNR     +  D  Q+ RS+  F   +
Sbjct: 12  HWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSN 71

Query: 124 FDK-----------VNRPYLEPSSLKSQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVG 183
            DK            N  YL             W  P    WKLN+DA+WS     GG+G
Sbjct: 72  IDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIG 131

Query: 184 WVLCDSTGSLVGAGCSRITRSWPIKALEGEAIRVGLSAFLRGTSEGHLRPPLKVESDALS 243
           W+LCD  G +V AG  +I     I ALE   I  GL  F+   S    R P+ +ESD++ 
Sbjct: 132 WILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQ-FINMQS----RSPIYLESDSVE 191

Query: 244 VGKVLAGEEEDLS 245
           V +++  E+ DL+
Sbjct: 192 VIRLMKKEDVDLT 199

BLAST of Spg035826 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.2e-15
Identity = 63/217 (29.03%), Postives = 98/217 (45.16%), Query Frame = 0

Query: 77  KMSKEELSKAAILMWTLWNSRNRCRINNQQPDSNQIARSLANFFEDFDKVNRPYLEPSSL 136
           K  +EE  ++ I+ W +W  RN+       P++  I  ++  +  +    N      S+ 
Sbjct: 3   KAGEEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTN 62

Query: 137 K--------SQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLCDSTGSLVGAGCSR 196
           K          ++   W+PP    WKLN++AAW      GG+GW+L D  G ++ A C  
Sbjct: 63  KDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRI 122

Query: 197 ITRSWPIKALEGEAIRVGLSAFLRGTSEGHLRPPLKVESDALSVGKVLAGEEEDLSESGL 256
           I     I  LE  AI  G    LR   + H R P+ +ESD+L    +L  + +D +E   
Sbjct: 123 IRAERNITYLEVMAICEG----LRAIRQEHCR-PIHLESDSLEAIHLLHRQCQDQTEIIW 182

Query: 257 IFTEILEMSRG-ERIDFEFCSRSTNVLGHQLAHVATE 285
           +  EI +M +  E +     SR  N + H LA  A E
Sbjct: 183 LLEEIWQMMKDMEIVSMRHISREANKVAHGLARRAME 214

BLAST of Spg035826 vs. ExPASy TrEMBL
Match: A0A1R3GIN3 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_25630 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.0e-14
Identity = 69/247 (27.94%), Postives = 109/247 (44.13%), Query Frame = 0

Query: 47   PKPWEAWSQPSTFFG--LDNWSAM-DYWSFMWKKMSK-EELSKAAILMWTLWNSRNRCRI 106
            P  +  W Q   +    L  WS+  D+W  + +K S+   L   A L+W +WN+RN+   
Sbjct: 1367 PFSYRVWGQSCPWIQGYLSEWSSRDDFWLLLLEKASQLGSLELVASLLWLIWNNRNKALY 1426

Query: 107  NNQQPDSNQIARSLANFFEDFDKVNRPYLEPSSLKSQSSHPLWRPPDRGWWKLNSDAAWS 166
            +      + +     N   DF+  NR       L+       WRPP  G +KLNSDAA+ 
Sbjct: 1427 DGVCKCPSVVCVLAVNLVSDFEAANR---RLERLQCSHVEQPWRPPSPGTFKLNSDAAYC 1486

Query: 167  NSARRGGVGWVLCDSTGSLVGAGCSRITRSWPIKALEGEAIRVGLSAFLRGT-SEGHLRP 226
               +  G+G V+ DSTG ++    +R+  +W + +L  E   +     +  T   GH   
Sbjct: 1487 CRRKEAGLGVVIRDSTGQVLYTAVTRV--AWVLDSLFAEVYAILFGLLVAKTFGLGH--- 1546

Query: 227  PLKVESDALSVGKVLAGEEEDLSESGLIFTEILEM-SRGERIDFEFCSRSTNVLGHQLAH 286
             +  ESD+L     L      L E G +  +I ++ S  +   F    RS N   H LAH
Sbjct: 1547 -VDAESDSLQAILELNRLTPSLWEGGSLIQQIKDLGSCFDSCSFRHVKRSANKFAHNLAH 1604

Query: 287  VATEWGD 288
            +  + G+
Sbjct: 1607 LECDVGE 1604

BLAST of Spg035826 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-13
Identity = 55/187 (29.41%), Postives = 87/187 (46.52%), Query Frame = 0

Query: 57  STFFGLD--NWSAMDYWSFMWKKMSKEELSKAAILMWTLWNSRNRCRINNQQPDSNQIAR 116
           + FF +D  NW+  +YW ++  K  +EE  ++ I+   +W  RN+        ++  I  
Sbjct: 159 ANFFYIDRTNWTTKEYWEWLMDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQL 218

Query: 117 SLANFFEDFDKVNRPYLEPS-SLKSQSSHPL----------WRPPDRGWWKLNSDAAWSN 176
           ++  +      +N    + +   KS+  HP+          W+PP    WKLN+DAAW  
Sbjct: 219 AIDRYI-----INSAGQDTNLKRKSKDFHPIRRIGDNTRARWKPPTSNSWKLNTDAAWRA 278

Query: 177 SARRGGVGWVLCDSTGSLVGAGCSRITRSWPIKALEGEAIRVGLSAFLRGTSEGHLRPPL 231
                G+GW+L D  G ++  GC  I     I  LE  AI  G    LR   + H R P+
Sbjct: 279 DTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEG----LRAIRQEHCR-PI 335

BLAST of Spg035826 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-11
Identity = 51/212 (24.06%), Postives = 91/212 (42.92%), Query Frame = 0

Query: 89  LMWTLWNSRNRCRINNQQPDSNQIARSLANFFEDFDKVNRPYLEPSSLKSQSSHPL---W 148
           L+W LW SRN      ++ D+ ++ R     FE++    R  LE  +   Q    L   W
Sbjct: 80  LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWS--TRRELEGKASGPQVERNLSVQW 139

Query: 149 RPPDRGWWKLNSDAAWSNSARRGGVGWVLCDSTGSLVGAGCSRITRSWPIKALEGEAIRV 208
           + P   W K N+DA W     R G+GW+L + +G ++  G   + R+  +   E EA+R 
Sbjct: 140 KAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRW 199

Query: 209 GLSAFLRGTSEGHLRPPLKVESDALSVGKVLAGEE---------EDLSESGLIFTEILEM 268
            +    R   +      +  ESDA ++  +L  ++         ED+ +          +
Sbjct: 200 AVLTMSRFNYK-----RIIFESDAQALVNLLNSDDFWPTLQPALEDIQQL---------L 259

Query: 269 SRGERIDFEFCSRSTNVLGHQLAHVATEWGDF 289
              E + FEF  R  N +  ++A  +  + ++
Sbjct: 260 HHFEEVKFEFTPRGGNKVADRIARESISFSNY 275

BLAST of Spg035826 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-10
Identity = 57/220 (25.91%), Postives = 92/220 (41.82%), Query Frame = 0

Query: 70  YWSF-------MWKKMSKEELSKAAILMWTLWNSRNRCRINNQQPDSNQIARSLANFFED 129
           YW F        W+K S+        L+W LW +RN      ++ ++ ++ R   +  E+
Sbjct: 341 YWVFNLGNGNPQWEKASQ----LVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEE 400

Query: 130 FDKVNRPYLEPSSLKSQ---SSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLCDSTG 189
           +    R   E    K Q   SS   WRPP   W K N+DA W+    R G+GWVL +  G
Sbjct: 401 WR--IRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKG 460

Query: 190 SLVGAGCSRITRSWPIKALEGEAIRVGLSAFLRGTSEGHLRPPLKVESDALSVGKVLAGE 249
            +   G   + +   +   E EA+R  + +  R      +      ESD+  + ++L  +
Sbjct: 461 EVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVI-----FESDSQVLIEILNND 520

Query: 250 EEDLSESGLIFTEILEMSRGERIDFEFCSRSTNVLGHQLA 280
           E   S    I      +S+   + F F  R  N L  ++A
Sbjct: 521 EIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVA 549

BLAST of Spg035826 vs. TAIR 10
Match: AT1G27870.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.5e-05
Identity = 23/75 (30.67%), Postives = 42/75 (56.00%), Query Frame = 0

Query: 111 QIARSLANFFEDFDKVNRPYLEPSSLKSQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGV 170
           ++A++ A+ + + + V +       ++ + +H  WR P+RGW K N D ++ N   +   
Sbjct: 18  RLAQTDAHEYTEANTVAQINTRSRGVREEDNHDRWRRPERGWIKCNFDGSFVNGDVKSKA 77

Query: 171 GWVLCDSTGSLVGAG 186
           GWV+ DS GS + AG
Sbjct: 78  GWVVRDSNGSYLLAG 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155262.11.2e-1730.61uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022143317.14.7e-1732.12uncharacterized protein LOC111013216 [Momordica charantia][more]
XP_015388122.11.4e-1627.05uncharacterized protein LOC107178012 [Citrus sinensis] >XP_024041306.1 uncharact... [more]
XP_006487889.11.8e-1625.25uncharacterized protein LOC102617714 [Citrus sinensis][more]
XP_021838584.12.3e-1625.70uncharacterized protein LOC110778326 [Spinacia oleracea][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNV96.0e-1830.61uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CQG02.3e-1732.12uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1CP266.2e-1529.03uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A1R3GIN34.0e-1427.94Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_25630 PE=4 SV... [more]
A0A6J1DL641.2e-1329.41uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
AT2G34320.12.4e-1124.06Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT4G29090.13.5e-1025.91Ribonuclease H-like superfamily protein [more]
AT1G27870.11.5e-0530.67Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 156..280
e-value: 3.1E-15
score: 56.1
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 141..283
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 141..283
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 155..280
e-value: 8.37458E-12
score: 59.6352
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 151..283

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035826.1Spg035826.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity