Spg035780 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg035780
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L18a-like protein
Location	scaffold5: 40423551 .. 40427649 (+)
RNA-Seq Expression	Spg035780
Synteny	Spg035780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACTCTTGTTCCGCCATAGCTCCGTCGCTCCAAAATTTCCCGGCGAATCCGCAGAAGAAGAAGAGAAAAGCGACGACGGGACCCTCGCCGTCGCCTTGATATTCAACACACCATATTTGATTCTGGTTTTCTTCTTCTTCTGCAAAGAATATGACTGGCGACGGGAAAAACAACCCGGTATTCCGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGCGTCGCAAACTATTATCCTTCTGCCCCACAGCCGCAGCCGCAGCCCCAGTCTTTCGTCGGTTTCCCTCAGCCGGTTGCTCCATCAGAAGTTTCTGGTGGCCACCCATGTTACCATGGACATCTCGGTTATCAAGCCGTTCCAGGTATATGACTCCCCTCGCCGATGTACTTTTATGATGCTCATGAATTTGGAGGATTTTGTTGTGGTATGAATTCTGGTAGATTGATTACGAATTCAGAATCTGAAGATCGATTGCGGGGTTCCTCCCAGGTGTTTGTGCAGAATTTTTGCTAAAATATTCATGTTTGAAGGGCATATGCGAATTGTTTTCTTTGTTTAGGAATTGACTGTCTTTCGTATGGTCTTTACCAATGATCATGATGATTTTGCTTTGTTATTTCTTTCCACATATTGGAATCATTTGGTTTGATGGGTATTAAATGCGTTTTGATGCTCTGTGCGGTTTATGATTGATTTGCTTTTTCCGGCTGGCTTAATGATTCAATGGTATGAATGTGTGAATAATATTCCAATGTTTAGTTTGATTATCGCCATCTAATAATGTCTAGAGGGACGTGAGAAATAAGGTTGAAAATTATGTTCAGGATTAATAAGGATTGGTTTCTAGCTCACCAGTTGGGACTGTTGACATAATTTACCGAAAGAAGAAATATAGTCGCAGGTGAAATTGAATGCTTCAAGAGCTAACTTATTTAAATAATGATGATCTAGGCAGCTATAGGATAGGATTTTAATCTTGAGTCTGTAACTGGTATGGGGACACGGCAATTTCTTTGGCAACAAGAAACATTTTTTTTATCGCATGAGGATGTGGAAGAGAGGAAGGAGGAGAGATATTGAGAATGCTATTCTCCTCTTTGTCATGGAGATTACAAAAAGAAAATTTCTAATCGACTTGAATTTTAGCAGAACAATACCAGAACTCTCTACTTTGAGATTACCAGTAACACCTAGCTTCCGAAACCAGAGTGCTCCCTTAAAAATCCAAAACCTCTTTGAACTTAATGGTTCTAAATTCTAATGGTCCCTTTCATTCCACATCTCAATTCTTCCATATTTATGGATAGCATGAAATTCTCCCAAAGAGTTTGGAGAAGGGTTGTCTCTTGAGCATGTACAATCATTTACTTTTTTTTGTCTAAGGCACCTAGGAAAGTGTTTTAGGAGATAGAGAAGATTCTAAGGATCTTTCTGAAGAAGGTCTGACCTTGGATCGTGGCTCAAATCTAATTAAATGGAACTTGGAAGACGGTTTCTCTTCAGCTGGAGAAGATGTTACTAGAGGCAGTTTCCTAGAGAGAATGGAAGAGTCCTTTTAATAGAGGAAAAGATTGTGGGAAAATTGTGTTTACGTTTCCTTCTATGAATCTCCTTGCATAAGGTCTTTTGGCGTTATTCTCTTTCCATGGTTTGTGCCAGTGGGAGAGTTTCTTTTGTTTTTTCCCCATATTTCCTTTTCAACTCTTTTGGCTTGTAGGCCCTTGCCTTGTAATGACGGCCCAAAAGCAGCTGGATGATGAAATCTCATGTATTATTTAAGGAGGATCCATTGGAAATTAAAAGCACTAGAGAAGTTCCGTTGCCACATCTTGGAAAACTCACATATCATGAGGTGCTGTCTCCTGATCTTCATCACTGTTCTTGCATCACATGTAATGATGCACTAGTTATCATAAATACTTGTACCCGAGTATCTTTGGGACCACCCTGATTTTCAAAAGCCTCTTGGTCTTCACCCAATGAGATTACAGCAATGATATACCAAAATTCTTTTTTTAAGGGATTGCTTAGGATGTGTTTATCATGAAAAGAAATCATCCTGATATTTCTTTGGAGACTGTAGTTGCGAGATGCTCCCGATTTAAACAGGGTATACTTTGCCACCTCTAATTTTATTTCTGGTAGAACTGAGACTAAATCATGTAACGTTTCCTTTTCACCCCAAAAGTGAAAGAGGTATCACCTGCTAGATATATCTATCTACACGTCTTGCTAGTGAGATGATCTAGCACCCAGCATCTTGCTCATTGAAAGTGTTCACCAAATCAGTGACAATATGATTATGTAATTTAGTTGCTTAATGTATTGAGGTTAATTAAAGATGGGCGTTGAAAGTTGAATGCCCTGTTCATAGATTATGTTGCAACATTATCAATCATGGCATCTTAAGGTGAATCCATAAACGAGCATATGAATTCCATTTGTAAAGTGATAGTTATGGACTGTGTTTTGGCATGTCAATTAGGCAGGGTGTCTGCTCGATAATCTATTTCTCATGCTTCCAGGAAAAGCCTTGCAGCATGTGTCTATCGTTTCATCTAATGATTTGGTTTGCTCATGTTAAATCTGTGCAAGCATCTTTTTTTTTTAAAGTTTCTAATGAAATAACTTTTGAAAAAACTAGAAGTTTAATTCAGTCAACCATGCATGTGTGTATGTACATGAATTTATATCTTTATGCAATTATTCAATGGCAGGGATGTTTTTATCCATCATCCGCCTTAATGTCTTTGTTTCTTGTAGTTCAAGGTTATGCTATTATTGAGGGAAGACCTTTTCAAGAACCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTAAGTTAATATGTTTAACCCCATTTCTCTACACTAATCCCCAACATGTCGATGATTAAAAAAACCATTGTTTTCCCAGGTTTATGATTGGTTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATTGTTCTCTTTGTACGGGTGGATTATCGAGAAAAGCCTGGATATGTTGCTTGTGCAATCGCTGTAAGTAGCTTTTATAAAAATATGATTTCTCATTACCTATCTTAGAAAAAAACAACAATAATACTAGAGGTACTCGAAATGATAAAGATTGAGGATGTTTTGAGAAGATATCCTTTAAAGTATTGGGTTCAAGCCCATCGATTGTGAACTTATGAACTCAAAACTCTTTTCTAAGGGGTACTCGAAATGATAAAGATTGAGGATGTTTTGAGATACCCTGTAAAGCATTAGGTTCAAGCCTATCGGTTGTGAATTTATTAACTCAAAACTCTTTTTCTTAAAGCCGAACTTAGGTGGGCGAAGCCACCCAAGAATCAGTGGGGTTGGACATTCGACACTTTGGTAACAAAAAATAATAATATACAACTGAATATTAACCCAAATTTTATCGTCTAACTGGAAGTTTTAGGCCATTGAGCTTGCGGTTTCTCTTTCTTGGATTTGAGTGTCGCTGCTAGGATGTTATGATTTTCATCTATTTCTAGATTTTGAAATTATGCTTTTGTTTCTTCTTGCTCATGCAGTCAGTTCTTGCCGTCATTGCTATAACATTTGGCATCACCAAAGGAGCTGACTCCTGGTAAAGGAGACATCTGCAGCACGGTCTGGTCTAGCCATGTCGTCGCCTGCATCAACGAAAACAACTGGTGGGGATCCTGTAATTAGCCTTGAAATTTTATTCTTTCAATCTCTATCTAGCATTTATTGGTTTCCTTTACCATATACTGAAATTTTCCTGACTTGCCAAATGTGAAATGTTAATAGATTGAAGACGAAACTAATAGATTGATTGGAATGTGTTGGATCAAATTGCACCCACCTTGACTATTTCTTACAACCGTCTCATCCTACTATATATAAATATTGTCGTTGAGTAAATTTGTCGGATGACCATTATGTCTTGAACCTATTTTCTCCGGGTCCTTTTCTATCTTTAATACCTCTTATTTGGTTATGTCTTTTTTGTTTTTGTTATGTAGTTATTGGTGATTAATTCGGATTATCATGAATTTTCATGAAAGTTGAGGACTACTTTTTGCAGTTATTGCCTTC

mRNA sequence

ATGACTGGCGACGGGAAAAACAACCCGGTATTCCGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGCGTCGCAAACTATTATCCTTCTGCCCCACAGCCGCAGCCGCAGCCCCAGTCTTTCGTCGGTTTCCCTCAGCCGGTTGCTCCATCAGAAGTTTCTGGTGGCCACCCATGTTACCATGGACATCTCGGTTATCAAGCCGTTCCAGAATCTGAAGATCGATTGCGGGGTTCCTCCCAGGAGGATCCATTGGAAATTAAAAGCACTAGAGAAGTTCCGTTGCCACATCTTGGAAAACTCACATATCATGAGGTGCTGTCTCCTGATCTTCATCACTTTCAAGGTTATGCTATTATTGAGGGAAGACCTTTTCAAGAACCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTATGATTGGTTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATTGTTCTCTTTGTACGGGTGGATTATCGAGAAAAGCCTGGATATGTTGCTTGTGCAATCGCTTCAGTTCTTGCCGTCATTGCTATAACATTTGGCATCACCAAAGGAGCTGACTCCTGGTAA

Coding sequence (CDS)

ATGACTGGCGACGGGAAAAACAACCCGGTATTCCGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGCGTCGCAAACTATTATCCTTCTGCCCCACAGCCGCAGCCGCAGCCCCAGTCTTTCGTCGGTTTCCCTCAGCCGGTTGCTCCATCAGAAGTTTCTGGTGGCCACCCATGTTACCATGGACATCTCGGTTATCAAGCCGTTCCAGAATCTGAAGATCGATTGCGGGGTTCCTCCCAGGAGGATCCATTGGAAATTAAAAGCACTAGAGAAGTTCCGTTGCCACATCTTGGAAAACTCACATATCATGAGGTGCTGTCTCCTGATCTTCATCACTTTCAAGGTTATGCTATTATTGAGGGAAGACCTTTTCAAGAACCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTATGATTGGTTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATTGTTCTCTTTGTACGGGTGGATTATCGAGAAAAGCCTGGATATGTTGCTTGTGCAATCGCTTCAGTTCTTGCCGTCATTGCTATAACATTTGGCATCACCAAAGGAGCTGACTCCTGGTAA

Protein sequence

MTGDGKNNPVFRDPQSQYHYGTFQGVANYYPSAPQPQPQPQSFVGFPQPVAPSEVSGGHPCYHGHLGYQAVPESEDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHEVLSPDLHHFQGYAIIEGRPFQEPRLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITKGADSW

Homology

[Close]

BLAST of Spg035780 vs. NCBI nr
Match: XP_022140257.1 (60S ribosomal protein L18a-like protein [Momordica charantia])

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-68
Identity = 137/202 (67.82%), Postives = 145/202 (71.78%), Query Frame = 0


Query: 1   MTGDGKNNPVFRDPQSQYHYGTFQGVANYYPSA--PQPQPQPQSFVGFPQPVAPSEVSGG 60
           M+GDGKN+ V  DPQSQYHYGTFQGVANYYPSA  PQPQPQP S VGFPQPVAP  VSG 
Sbjct: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60

Query: 61  HPCYHGHLGYQAVPESEDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHEVLSPDLHHFQG 120
           HP YHGHLGYQAVP                                            QG
Sbjct: 61  HPYYHGHLGYQAVP-------------------------------------------VQG 120

Query: 121 YAIIEGRPFQEPRLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 180
           YAIIEGRP+QE RLPCCGIGMGWFLF+IGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC
Sbjct: 121 YAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 159

Query: 181 AIASVLAVIAITFGITKGADSW 201
            IASVLA++AITFG+TKGA+SW
Sbjct: 181 VIASVLALVAITFGVTKGAESW 159

[Close]

BLAST of Spg035780 vs. NCBI nr
Match: XP_008444018.1 (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo])

HSP 1 Score: 266.9 bits (681), Expect = 1.4e-67
Identity = 137/202 (67.82%), Postives = 142/202 (70.30%), Query Frame = 0


Query: 1   MTGDGKNNPVFRDPQSQYHYGTFQGVANYY--PSAPQPQPQPQSFVGFPQPVAPSEVSGG 60
           M+GDGK++ VF DP SQYHYGTFQGVANYY  P  PQPQPQPQS VGFPQPVAP  VSG 
Sbjct: 1   MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAPPVVSGH 60

Query: 61  HPCYHGHLGYQAVPESEDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHEVLSPDLHHFQG 120
            PCYHGHLGYQAVP                                            QG
Sbjct: 61  QPCYHGHLGYQAVP-------------------------------------------VQG 120

Query: 121 YAIIEGRPFQEPRLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 180
           YAI+EGRPFQE RLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC
Sbjct: 121 YAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 159

Query: 181 AIASVLAVIAITFGITKGADSW 201
           AIASVLAVIAITFGIT G + W
Sbjct: 181 AIASVLAVIAITFGITNGVEPW 159

[Close]

BLAST of Spg035780 vs. NCBI nr
Match: XP_004147407.1 (60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN65566.1 hypothetical protein Csa_019751 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 3.1e-67
Identity = 137/202 (67.82%), Postives = 141/202 (69.80%), Query Frame = 0


Query: 1   MTGDGKNNPVFRDPQSQYHYGTFQGVANYY--PSAPQPQPQPQSFVGFPQPVAPSEVSGG 60
           M+GDGK+N VF DP SQYHYGTFQGVANYY  P  PQPQPQPQS VGFPQPVA   VSG 
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60

Query: 61  HPCYHGHLGYQAVPESEDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHEVLSPDLHHFQG 120
            PCYHGHLGYQAVP                                            QG
Sbjct: 61  QPCYHGHLGYQAVP-------------------------------------------VQG 120

Query: 121 YAIIEGRPFQEPRLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 180
           YAI+EGRPFQE RLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC
Sbjct: 121 YAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 159

Query: 181 AIASVLAVIAITFGITKGADSW 201
           AIASVLAVIAITFGIT G + W
Sbjct: 181 AIASVLAVIAITFGITNGVEPW 159

[Close]

BLAST of Spg035780 vs. NCBI nr
Match: XP_038895475.1 (60S ribosomal protein L18a-like protein [Benincasa hispida])

HSP 1 Score: 265.8 bits (678), Expect = 3.1e-67
Identity = 137/200 (68.50%), Postives = 142/200 (71.00%), Query Frame = 0


Query: 1   MTGDGKNNPVFRDPQSQYHYGTFQGVANYYPSAPQPQPQPQSFVGFPQPVAPSEVSGGHP 60
           M+GDGK++ VF DPQSQYHYGTFQGVANYY SA  PQ QPQSFVGFPQPV PS VSG HP
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSA--PQAQPQSFVGFPQPVTPSGVSGHHP 60

Query: 61  CYHGHLGYQAVPESEDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHEVLSPDLHHFQGYA 120
           CYHGHLGYQAVP                                            QGYA
Sbjct: 61  CYHGHLGYQAVP-------------------------------------------VQGYA 120

Query: 121 IIEGRPFQEPRLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAI 180
           IIE RPF+E RLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAI
Sbjct: 121 IIERRPFEEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAI 155

Query: 181 ASVLAVIAITFGITKGADSW 201
           ASVLAVIAITFGIT G + W
Sbjct: 181 ASVLAVIAITFGITNGVEPW 155

[Close]

BLAST of Spg035780 vs. NCBI nr
Match: KAG7019534.1 (60S ribosomal protein L18a-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262.7 bits (670), Expect = 2.6e-66
Identity = 135/202 (66.83%), Postives = 155/202 (76.73%), Query Frame = 0


Query: 1   MTGDGKNNPVFRDPQSQYHYGTFQGVANYYPSAPQPQPQ--PQSFVGFPQPVAPSEVSGG 60
           M+GDGK++ VF DPQSQYHYGTFQGVANYY SAP+PQPQ  PQS VGFP  VAP      
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPEPQPQPHPQSVVGFPPQVAPPR---- 60

Query: 61  HPCYHGHLGYQAVPESEDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHEVLSPDLHHFQG 120
           HPCYHGHL YQAVP       G   ++   +    E  L H+  ++ ++++S     FQG
Sbjct: 61  HPCYHGHLDYQAVP-------GCLLDNLFLV--LPENALQHMSIVSPNDLVS----SFQG 120

Query: 121 YAIIEGRPFQEPRLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 180
           YAIIEGRPF E RLPCCGIGMGWFLFMIGFFLGGIPWYVGAF+VLFVRVDYREKPGY+AC
Sbjct: 121 YAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFVVLFVRVDYREKPGYIAC 180

Query: 181 AIASVLAVIAITFGITKGADSW 201
           AIASVLAV+AITFG++KG + W
Sbjct: 181 AIASVLAVMAITFGVSKGVEIW 185

[Close]

BLAST of Spg035780 vs. ExPASy Swiss-Prot
Match: Q8L9S1 (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 4.1e-30
Identity = 83/189 (43.92%), Postives = 102/189 (53.97%), Query Frame = 0


Query: 15  QSQYHYGTFQGVANYYPSAPQPQPQPQSFVGFPQPVAPSEVSGGHPCYHGHLGYQAVPES 74
           Q QY+YGTFQGVAN+    P P P PQ    F QP  P     GH        YQ     
Sbjct: 16  QHQYYYGTFQGVANF----PTPTPPPQ----FMQPQHPITTFPGH-------AYQ----- 75

Query: 75  EDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHE---VLSPDLHHFQGYAIIEGRPFQEPR 134
              L+G                  H G + Y +   V+ PD      Y ++E RP  E  
Sbjct: 76  --NLQG------------------HGGGVNYAQGFPVVVPD------YTVVEVRPMIEHE 135

Query: 135 LPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITF 194
           LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GYVAC+IASV+ +IA+  
Sbjct: 136 LPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIASVVYLIAVML 158

Query: 195 GITKGADSW 201
           G+T   + W
Sbjct: 196 GMTGDINIW 158

[Close]

BLAST of Spg035780 vs. ExPASy TrEMBL
Match: A0A6J1CGC1 (60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111010965 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 6.0e-69
Identity = 137/202 (67.82%), Postives = 145/202 (71.78%), Query Frame = 0


Query: 1   MTGDGKNNPVFRDPQSQYHYGTFQGVANYYPSA--PQPQPQPQSFVGFPQPVAPSEVSGG 60
           M+GDGKN+ V  DPQSQYHYGTFQGVANYYPSA  PQPQPQP S VGFPQPVAP  VSG 
Sbjct: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60

Query: 61  HPCYHGHLGYQAVPESEDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHEVLSPDLHHFQG 120
           HP YHGHLGYQAVP                                            QG
Sbjct: 61  HPYYHGHLGYQAVP-------------------------------------------VQG 120

Query: 121 YAIIEGRPFQEPRLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 180
           YAIIEGRP+QE RLPCCGIGMGWFLF+IGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC
Sbjct: 121 YAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 159

Query: 181 AIASVLAVIAITFGITKGADSW 201
            IASVLA++AITFG+TKGA+SW
Sbjct: 181 VIASVLALVAITFGVTKGAESW 159

[Close]

BLAST of Spg035780 vs. ExPASy TrEMBL
Match: A0A1S3B9D9 (60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103487462 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.7e-68
Identity = 137/202 (67.82%), Postives = 142/202 (70.30%), Query Frame = 0


Query: 1   MTGDGKNNPVFRDPQSQYHYGTFQGVANYY--PSAPQPQPQPQSFVGFPQPVAPSEVSGG 60
           M+GDGK++ VF DP SQYHYGTFQGVANYY  P  PQPQPQPQS VGFPQPVAP  VSG 
Sbjct: 1   MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAPPVVSGH 60

Query: 61  HPCYHGHLGYQAVPESEDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHEVLSPDLHHFQG 120
            PCYHGHLGYQAVP                                            QG
Sbjct: 61  QPCYHGHLGYQAVP-------------------------------------------VQG 120

Query: 121 YAIIEGRPFQEPRLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 180
           YAI+EGRPFQE RLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC
Sbjct: 121 YAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 159

Query: 181 AIASVLAVIAITFGITKGADSW 201
           AIASVLAVIAITFGIT G + W
Sbjct: 181 AIASVLAVIAITFGITNGVEPW 159

[Close]

BLAST of Spg035780 vs. ExPASy TrEMBL
Match: A0A0A0M051 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448970 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.5e-67
Identity = 137/202 (67.82%), Postives = 141/202 (69.80%), Query Frame = 0


Query: 1   MTGDGKNNPVFRDPQSQYHYGTFQGVANYY--PSAPQPQPQPQSFVGFPQPVAPSEVSGG 60
           M+GDGK+N VF DP SQYHYGTFQGVANYY  P  PQPQPQPQS VGFPQPVA   VSG 
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60

Query: 61  HPCYHGHLGYQAVPESEDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHEVLSPDLHHFQG 120
            PCYHGHLGYQAVP                                            QG
Sbjct: 61  QPCYHGHLGYQAVP-------------------------------------------VQG 120

Query: 121 YAIIEGRPFQEPRLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 180
           YAI+EGRPFQE RLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC
Sbjct: 121 YAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 159

Query: 181 AIASVLAVIAITFGITKGADSW 201
           AIASVLAVIAITFGIT G + W
Sbjct: 181 AIASVLAVIAITFGITNGVEPW 159

[Close]

BLAST of Spg035780 vs. ExPASy TrEMBL
Match: A0A6J1EHH7 (60S ribosomal protein L18a-like protein OS=Cucurbita moschata OX=3662 GN=LOC111434348 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.9e-63
Identity = 129/202 (63.86%), Postives = 139/202 (68.81%), Query Frame = 0


Query: 1   MTGDGKNNPVFRDPQSQYHYGTFQGVANYYPSAPQPQPQ--PQSFVGFPQPVAPSEVSGG 60
           M+GDGK++ VF DPQSQYHYGTFQGVANYY SAP+PQPQ  PQS VGFP  VAP      
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPEPQPQPHPQSVVGFPPQVAPPR---- 60

Query: 61  HPCYHGHLGYQAVPESEDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHEVLSPDLHHFQG 120
           HPCYHGHL YQAVP                                            QG
Sbjct: 61  HPCYHGHLDYQAVP-------------------------------------------VQG 120

Query: 121 YAIIEGRPFQEPRLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 180
           YAIIEGRPF E RLPCCGIGMGWFLFMIGFFLGGIPWYVGAF+VLFVRVDYREKPGY+AC
Sbjct: 121 YAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFVVLFVRVDYREKPGYIAC 155

Query: 181 AIASVLAVIAITFGITKGADSW 201
           AIASVLAV+AITFG++KG + W
Sbjct: 181 AIASVLAVMAITFGVSKGVEIW 155

[Close]

BLAST of Spg035780 vs. ExPASy TrEMBL
Match: A0A6J1KIR0 (60S ribosomal protein L18a-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495603 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.5e-62
Identity = 129/202 (63.86%), Postives = 138/202 (68.32%), Query Frame = 0


Query: 1   MTGDGKNNPVFRDPQSQYHYGTFQGVANYYPSAPQPQPQ--PQSFVGFPQPVAPSEVSGG 60
           M+ DGK++ VF DPQSQYHYGTFQGVANYY SAPQPQPQ  PQS VGFP  VAP      
Sbjct: 1   MSCDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPQPQPQPHPQSVVGFPPQVAPPR---- 60

Query: 61  HPCYHGHLGYQAVPESEDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHEVLSPDLHHFQG 120
           HPCYHGHL YQAVP                                            QG
Sbjct: 61  HPCYHGHLDYQAVP-------------------------------------------VQG 120

Query: 121 YAIIEGRPFQEPRLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC 180
           YAIIEGRPF E RLPCCGIGMGWFLFMIGFFLGGIPWYVGAF+VLFVRVDYREKPGY+AC
Sbjct: 121 YAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFVVLFVRVDYREKPGYIAC 155

Query: 181 AIASVLAVIAITFGITKGADSW 201
           AIASVLAV+AITFG++KG + W
Sbjct: 181 AIASVLAVMAITFGVSKGVEIW 155

[Close]

BLAST of Spg035780 vs. TAIR 10
Match: AT1G17080.1 (Ribosomal protein L18ae family )

HSP 1 Score: 146.0 bits (367), Expect = 3.3e-35
Identity = 86/188 (45.74%), Postives = 106/188 (56.38%), Query Frame = 0


Query: 16  SQYH-YGTFQGVANYYPSAPQPQPQPQSFV-GFPQPVAPSEVSGGHPCYHGHLGYQAVPE 75
           +Q+H YGTFQGV+NY      P PQ  + V GFPQP AP  V      Y+ H GYQ VP 
Sbjct: 18  NQHHQYGTFQGVSNY------PPPQNSAPVTGFPQPSAPPGVYDSGAPYYAH-GYQTVP- 77

Query: 76  SEDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHEVLSPDLHHFQGYAIIEGRPFQEPRLP 135
                                    H G                   + EGRP ++ RLP
Sbjct: 78  ------------------------VHGG-------------------VAEGRPVRQRRLP 137

Query: 136 CCGIGMGWFLFMIGFFLGGIPWYVGAFIVLF-VRVDYREKPGYVACAIASVLAVIAITFG 195
           CCGIG+GWFLF++GFFLG IPWYVG FI++F  R+DYREKPGY+AC IA++LA IA+  G
Sbjct: 138 CCGIGLGWFLFIVGFFLGAIPWYVGLFIMMFGRRIDYREKPGYIACTIAAILATIAVILG 154

Query: 196 ITKGADSW 201
           ++KGAD W
Sbjct: 198 VSKGADDW 154

[Close]

BLAST of Spg035780 vs. TAIR 10
Match: AT1G29970.1 (60S ribosomal protein L18A-1 )

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-31
Identity = 83/189 (43.92%), Postives = 102/189 (53.97%), Query Frame = 0


Query: 15  QSQYHYGTFQGVANYYPSAPQPQPQPQSFVGFPQPVAPSEVSGGHPCYHGHLGYQAVPES 74
           Q QY+YGTFQGVAN+    P P P PQ    F QP  P     GH        YQ     
Sbjct: 16  QHQYYYGTFQGVANF----PTPTPPPQ----FMQPQHPITTFPGH-------AYQ----- 75

Query: 75  EDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHE---VLSPDLHHFQGYAIIEGRPFQEPR 134
              L+G                  H G + Y +   V+ PD      Y ++E RP  E  
Sbjct: 76  --NLQG------------------HGGGVNYAQGFPVVVPD------YTVVEVRPMIEHE 135

Query: 135 LPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITF 194
           LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GYVAC+IASV+ +IA+  
Sbjct: 136 LPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIASVVYLIAVML 158

Query: 195 GITKGADSW 201
           G+T   + W
Sbjct: 196 GMTGDINIW 158

[Close]

BLAST of Spg035780 vs. TAIR 10
Match: AT1G53560.1 (Ribosomal protein L18ae family )

HSP 1 Score: 125.6 bits (314), Expect = 4.6e-29
Identity = 72/181 (39.78%), Postives = 93/181 (51.38%), Query Frame = 0


Query: 20  YGTFQGVANYYPSAPQPQPQPQSFVGFPQPVAPSEVSGGHPCYHGHLGYQAVPESEDRLR 79
           YGTFQGV  Y P +    P     +G PQP  P     G P +H    +Q + E      
Sbjct: 16  YGTFQGVPTYPPPSYPHPPSHHPVIGIPQPSPPP----GSP-HHDISVHQYIQE------ 75

Query: 80  GSSQEDPLEIKSTREVPLPHLGKLTYHEVLSPDLHHFQGYAIIEGRPFQEPRLPCCGIGM 139
                                     H+ ++       GY + +GRP ++ RLPCCG+G+
Sbjct: 76  --------------------------HQTVA-------GYPVSQGRPARQNRLPCCGLGL 135

Query: 140 GWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITKGADS 199
           GWFLF+IGF LG IPWYVG FI++  R+D REKPGYVAC IA+V+A I I FG+  G   
Sbjct: 136 GWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACTIAAVVATITIVFGVMGGRGV 152

Query: 200 W 201
           W
Sbjct: 196 W 152

[Close]

BLAST of Spg035780 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 )

HSP 1 Score: 119.4 bits (298), Expect = 3.3e-27
Identity = 76/170 (44.71%), Postives = 90/170 (52.94%), Query Frame = 0


Query: 15  QSQYHYGTFQGVANYYPSAPQPQPQPQSFVGFPQPVAPSEVSGGHPCYHGHLGYQAVPES 74
           Q QY+YGTFQGVAN+    P P P PQ    F QP  P     GH        YQ     
Sbjct: 16  QHQYYYGTFQGVANF----PTPTPPPQ----FMQPQHPITTFPGH-------AYQ----- 75

Query: 75  EDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHE---VLSPDLHHFQGYAIIEGRPFQEPR 134
              L+G                  H G + Y +   V+ PD      Y ++E RP  E  
Sbjct: 76  --NLQG------------------HGGGVNYAQGFPVVVPD------YTVVEVRPMIEHE 135

Query: 135 LPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIA 182
           LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GYVAC+IA
Sbjct: 136 LPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIA 139

[Close]

BLAST of Spg035780 vs. TAIR 10
Match: AT1G29970.3 (60S ribosomal protein L18A-1 )

HSP 1 Score: 112.5 bits (280), Expect = 4.0e-25
Identity = 83/231 (35.93%), Postives = 102/231 (44.16%), Query Frame = 0


Query: 15  QSQYHYGTFQGVANYYPSAPQPQPQPQSFVGFPQPVAPSEVSGGHPCYHGHLGYQAVPES 74
           Q QY+YGTFQGVAN+    P P P PQ    F QP  P     GH        YQ     
Sbjct: 16  QHQYYYGTFQGVANF----PTPTPPPQ----FMQPQHPITTFPGH-------AYQ----- 75

Query: 75  EDRLRGSSQEDPLEIKSTREVPLPHLGKLTYHE---VLSPDLHHFQGYAIIEGRPFQEPR 134
              L+G                  H G + Y +   V+ PD      Y ++E RP  E  
Sbjct: 76  --NLQG------------------HGGGVNYAQGFPVVVPD------YTVVEVRPMIEHE 135

Query: 135 LPCCGIGMGWFL------------------------------------------FMIGFF 194
           LPCCG+GMGWFL                                          F++GF 
Sbjct: 136 LPCCGLGMGWFLSKLQKLRFMVVGNSSLLSWNLFVSSEILDELIASWNQYKKSVFIMGFL 195

Query: 195 LGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITKGADSW 201
            GGIPWY+GAFIVL   VD+REK GYVAC+IASV+ +IA+  G+T   + W
Sbjct: 196 FGGIPWYLGAFIVLVTSVDHREKAGYVACSIASVVYLIAVMLGMTGDINIW 200

The following BLAST results are available for this feature:

BLAST of Spg035780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140257.1	1.2e-68	67.82	60S ribosomal protein L18a-like protein [Momordica charantia]	[more]
XP_008444018.1	1.4e-67	67.82	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]	[more]
XP_004147407.1	3.1e-67	67.82	60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN65566.1 hypothetic...	[more]
XP_038895475.1	3.1e-67	68.50	60S ribosomal protein L18a-like protein [Benincasa hispida]	[more]
KAG7019534.1	2.6e-66	66.83	60S ribosomal protein L18a-like protein [Cucurbita argyrosperma subsp. argyrospe...	[more]

BLAST of Spg035780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9S1	4.1e-30	43.92	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g2...	[more]

BLAST of Spg035780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CGC1	6.0e-69	67.82	60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A1S3B9D9	6.7e-68	67.82	60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103487462 ...	[more]
A0A0A0M051	1.5e-67	67.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448970 PE=4 SV=1	[more]
A0A6J1EHH7	4.9e-63	63.86	60S ribosomal protein L18a-like protein OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KIR0	2.5e-62	63.86	60S ribosomal protein L18a-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495...	[more]

BLAST of Spg035780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17080.1	3.3e-35	45.74	Ribosomal protein L18ae family	[more]
AT1G29970.1	2.9e-31	43.92	60S ribosomal protein L18A-1	[more]
AT1G53560.1	4.6e-29	39.78	Ribosomal protein L18ae family	[more]
AT1G29970.2	3.3e-27	44.71	60S ribosomal protein L18A-1	[more]
AT1G29970.3	4.0e-25	35.93	60S ribosomal protein L18A-1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..49
None	No IPR available	PANTHER	PTHR46631:SF20	60S RIBOSOMAL PROTEIN L18A-LIKE PROTEIN	coord: 113..200 coord: 1..72
IPR044804	AT1G29970-like	PANTHER	PTHR46631	60S RIBOSOMAL PROTEIN L18A-LIKE	coord: 113..200 coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg035780.1	Spg035780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane