Spg035716 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg035716
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	scaffold11: 21384410 .. 21390272 (-)
RNA-Seq Expression	Spg035716
Synteny	Spg035716

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGTAGAGAACGGTTTCTTCAAGACCATGATATCAAGAAGAACGCAGAGTTTTTAAATGATAAATCAAAACTTTTGGCAGCTCTAGCGCATACTACCTCTGATGCAAACTTCCAAAGGATCCTTCAAATGGCGGCATCCTCGACAAGTGGTTCTCCAACCTCGTCTATCCAAGAAGAAGAAGAAGAAGCAGATCCAGAATATGATCTAGACGATCCATTTCTCGACTCACAACCTATGTGAGCTCCGAATCAATTAAAATTCTCTGTTTCGCAAAGAAACAAATGGTGTTCATAAGGGATGCTTCATAAAGAGGTATTTCCATCAAACTTGTAAAAAACAATTAAAAAAAAAAGCATGTATGTTCTCATCTCTAGAATTAATAGGTGTAAACTTTGTAAATATTCTAGTTTACACTATAAATACATTTCTGCCAATCAACTATTTGAAGAAGTTATCTTGAAGCAGCAAAGCAATGAAAGTAAAAGATTATGAGATTTTGAAGACGAAGATTATTGGTAATTCTCCTAGTTTGTGAGGACCTAGTTTGGTGTTCCAGGCAGTAAGACCTAATGATGAGGTCGTGAGTCCGTTGGTAAGCCAGTAATCAGCCTAGGATGATCGAACGAAGGGAAGAATCAATAATTTAACCGACAAGATATCGGATCAAAAGGAAGAGAAAAGGCTGCATCCTTTCCAAAATTGGCCGGCAATATTCGATCTTATCTATGTAAAACGTTTTCCATTTACATAGAAGAAATGTCTTGCTTCTTACATTTGCAAGATAGATGTCACATTTTGTCATTTTACTTTGTTTTGTTTTTTTTACTTTTTTCTTTTATTTTACTTTTTTTTCTACTTCTGTAGATTCTTTTGTATATTTTGGCTTTTATGCTTTGTATTTTTCACATGGTAAATTATTGGGATTCTATCCCAATAATGTGATATGTATGTATTTTCCAACGAATCTATCAGGGGTCCTGTCCTGATGATTCAATCTTATCTTTTAATTTTCTGTATTCAATTAGCTTTGAAGTCTGAGGTCTATAAAAACTTCCAAATTGTATTGTAAAGGCAGAATTCGAAATCCTTCAAGCTATCCTCTCTTGTAAAGCTTGAATATTCGAACTTGCCATCTTCTTGTAATATCGATCCTAATTCTCATTGCAGTCAGCATCGAGCAATTAGTATCACAACAAGCAATTAGAGAAATATATCAATTTCTTGAAATAGATGCACTAGTTTTACTTAAATAATTTCCCGGACGCCACCATCGGCGAAGCTTCCACTTCCACTCCCACTATCTAGGCCTGTCAAAAATGATATTGGCCCTGTGACATTTTTAAAAATGAGGTCCTAAAATATTTTATAACAAAGATAAGGTTGTAAAATATAAAAATTCATTGTATTATACAAAGTTGTAATATATATATTTATTTACATACAAACAAAATGTATATATATTAATATATGTGTACATGTGTATATATATATATGTGTGTGTGTACATGTGTGTGTACACACACATACATCTACATATATACAAATATGTATGAATGTATCCATCCATACATACTTATAAATGTAAATTATTACAGAAAATGAAAATCGAAATAAGAATACTTAGGTGAATCACGATCGGTGCAAGAGAGGCATACACGCAGTAAAACAAGTGGAGAGAAATAACGTCAGTCTATTTAAGTCTCCTTCTATGCTCAAGAACGCCAGTGGATTTAGGTTTTTCATTTTCTTCTCGTTCGTGTGATAGTAGAATGGAATTCTCGAAAGAAAAATGCTCGATAAGAATGGGAAAACAGGCTCAACACCACAAAAGAGGCTTGAGAAGGTATATCGATTTCTTGAAATAGAGGCACCAGTTTTACTTGAATAATTCCCCTGACGCCACCATCGCTGTAGCTTCCGTTCCACTTCCATTGCCACCATCCAGGCTCGTCCCAAATGAGACGGACCCTGCGACATTTTAAAAAATGAGGCACTAAAATATTTTATAACAAAGACAAAGTTGTAAAATATCAAAATTCATTGTATTTGTGTGTGTGCGCGTGTGTACATGTATATATATACAAATATGTATGTTTGTATCCATCCAAACATACATATAAATGTAAATTATTATAGAAAATGAAAATCGAAATAAGATTATTTAGTTGAATCACGATCGGTGTTAGGGAGGCATACACACAGTAAAACAGGGGGAGAGAAAGAATGCCAGTCTATTTAAGCCTCCTATTCTCAAGAACGCCAGTCGATTTAGGTTTTTGATTTTCTTCTCGTTCGTGTGAGAGTAGAATGGAATTCTCGGAAGGAAAATGCTCAAGAAGAATGGGTAAACAGGCTCAACACCACAAAAGAGACTTGGGAAGGTATATATGAGGTGAATAAGGTCATCTTTAATAAGATAGACAAATATATCGATTTCTTGAAACAGATGCACCAGTTTTACTTGAATAATTCCCCTGACGCCACCATCGGCGAAGCTTCCACTTCCACTCCCACTATCAAGGTTCGTCAAAAATGATATTGGCCTTGTGACATTTTTTAAAATGAGGTCCTAAAATATTTTATAACAAAGATAAGTTTGTAAAATATAAAAATTCATTGTTTTATACAAAGTTGTAATATATATATTTATTTACATACATACAAAATGTATATATATTAATATATGTGTACATGTGTGTGTACACACACATACACTACATATATACAAATATGTATGTATGTATCAATACATACATACATATAAATGTAAATTATAACAAAAAAAGAAAATCAGAATTAGAATATTTAGGTGAATCACGATCGGTGCGAGGGAGGCATAGACGCAGTAAAACAGGGGAGAGAGAAAGAACGCCAGTCTATTTAATTCCCCTTCTATTCTCAAGAACGCTGGTCGATTTTGGTTTTCGATTTTCTTCTCGTCCGTGTGTTAGTAGAATGAAACTCTCACAAGGTGAATGCTCGAGAAGAATGGGAAAACAGGCTCAACACCATAAAAGAGACTTAGAAAGGTATAGTTGAGGTGAAGAAGGTCAACTTTAATAAGATAGATAAATATATCGATTTCTTGAAATTGATGCACCAGTTTTACTTGAATAATTCCCCTAACACCACCATCGGCGAAGCTTCCACTTCCACTCCCACCATCCAAGCTCGTCCCAAATGAGATGGATCCTATGACATTTTTAAAAATGAGACCCTAAAATATTTTATGACAAAGACAAAGTTGTAACATATCAAAATTAATTCTATTATACAAAGTTGTAATATATATATTGATTTACACACATACATAATGTATATATATTTATATATGTGTACATGCGTATATATATATATATGTGTGTGTGTGTGTGTGTACATGTGTGTGTACACACACATACATCTACATATATACAAATATGTATGTATGTATCCATCTATACATACATATAAATGTAAATTATTACAGAAAACGAAAATCGAAATAAGAACATTTAGGTGAATCATGATTGGTGCAAGGGAGGCATACACGCAGTAAAACAGGTGGAGAGAGAGAACGTTAGTCTATTTACTTCTCCTTCAATTCTCAAGAACGCTAGTCGATCTAGGTCTTCGATTTTCTTCTCGTCTGTGTGACAGTAGAATGGAATTCTCGGAAGGCAAATGCTCGACAAGAATGGGAAAACAGGCTCAACACCACAAAAGAGGCTTGATGATATGGATTCAATCAATAATCCATTGCATGTACCTAACGGACCAATCACAAGGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATGCGCAACGAGAGGCCGAGAATTTTGAACCCAAATTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTATTTTGGAAGATGGCACGGGGGACGAAAAAAGTGTGCAGAATTTGTGAAGAGGTGGTTGTCCAACTTGCAACTCTTGGGATTTCGTGATGTCAAAGTTTGTCAAACGTTTTCATTATGAGGAGCGCCTCCCATAGCGCATATTTAAGACAATTTAAAGCAATTCTATCTTTTTAGTTTTGAGATATGGCTGCTCGTTTGACATGCAATCAAGTTTTAAGTTCCTAGGTCTTATTTTCTACAATTTGCAATTAAGTGTATTTGAATGACTTTTGAGTTTCTTGGTCTATCCACGACCATTTGGCCTTTAAAATGGCTTGTAATGCTCATGAAAAGGCAGAATATCAATATTAAAAAGCTTGTGCTTATTCAACCCTTTTGGTGTTGTCCTTTCTTTTCAAATCTTGTCTTAGGTTTGATGTTCAACCGATTCATTGGATTAGTTTTGATCAATCTAATTCTCGAGTGAGTCGTCTTAGGATCTAGGAGTGACCATCATAGATTCTAAGTTTGATCTTAGAGTGATTCATCTTCTAACTAAACTCTTGGTTGGAATCATTCGGTAAGTTAGTCTTATTTGTGTCCGTTTACAAGGATCCTAGAAGGACCTCTTGAAGGACTGGAATTCCATAATTCTGTAAAGCGGAAGCGTGATTGGGACCGATTCGTAATTAATTTTGTTTAATCTAAAATACCAATACATTGGCAATAATATTAGAACTATTCTAAATATATATTAAGGCTAAGCATACAAAAATATTAGATCTAAATCTAATTTATAAAGTAACAAATTACTTACTCTCGTTGACGACTCAGATTAAATTCACCAACTGCTTGTGAATTAATCACGAACTAGTGTGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGAAGGAGACTTGTGGGAGCCTTTGGGAGAATTCTCTGAGAGTAGGAGAATGAATGGGATACCTTTCACCCCACCCCAGGGGCCCTATATATAGTAAAGGCCAAGACCTTTTTCCTAATAGGAAAAGGGAGACCTTTTCCCAATAGGAAAAAGTCTCTAATTTTAATAAATAATTAATTAATTCCATAATTAATTAATTTCCCAATTAAATATCATATATTTAATCTTAGGGATTTTATTAAAATTAAAATTAATATGAATCCAATTCATATTAAATTTATTTGAACTCTTTCAAATATTTTCTTTCCTAATAGGAAAAGATCTCTAATTTTAATAAATAATTAATTAATTCCATAATTAATTAATTTACCCAATTAAATATCATATATTTAATCTTAGGGATTTTATTAAAATTAAAATTAATATGAATCCAATTCATATTAAATTTATTTGAACTCTTTCAAATACTTTCTCTCAAGAATTAATTAATTCAAAAATTATATTATAAAGTTTCATAAATTTTATATTATAATGCATCAATATACATTATACGATTCTCCAAATAAATTGGACACTTTCAATTTACAATTTATACTTAATTGCCTCAAGTCTCTTTACGAGCTACCAGTGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGACTAATTGGCCAAACTCATTGATCAAGTTTAGTCAACATTCGTTAACTGTGGGTCACTCCACTAAAGATCCACAGTTGCACTATTCTCACTATAGAATATTTCTGTGTCCACGGATATCAACCAAGCAGTAAGTCAATCCTTCACGTGTGTTCGTAACACCAGCTGGGTCAAATTACCGTTTTACCCCTGGGTTACCTCTGGTTCCTTAAGTACCATTGATTCCTCTAATGAACAAGTTGTTTAGGGTCCAACCACTAAACAGGAGTTCCTCTCAGGCTAGGAGAGGACGGCGCGCCTTTCTTCAAGCCCTAGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAG

mRNA sequence

ATGGTTCGTAGAGAACGGTTTCTTCAAGACCATGATATCAAGAAGAACGCAGAGTTTTTAAATGATAAATCAAAACTTTTGGCAGCTCTAGCGCATACTACCTCTGATGCAAACTTCCAAAGGATCCTTCAAATGGCGGCATCCTCGACAAGTGGTTCTCCAACCTCGTCTATCCAAGAAGAAGAAGAAGAAGCAGATCCAGAATATGATCTAGACGATCCATTTCTCGACTCACAACCTATTTTGGTGTTCCAGGCAGTAAGACCTAATGATGAGGTCGTGAGTCCGTTGAATGGAATTCTCGAAAGAAAAATGCTCGATAAGAATGGGAAAACAGGCTCAACACCACAAAAGAGGCTTGAGAAGGTATATCGATTTCTTGAAATAGAGGCACCAGTTTTTGATTTTCTTCTCGTTCGTGTGAGAGTAGAATGGAATTCTCGGAAGGAAAATGCTCAAGAAGAATGGGTAAACAGGCTCAACACCACAAAAGAGACTTGGGAAGGTATATATGAGGTGAATAAGGTCATCTTTAATAAGATAGACAAATATATCGATTTCTTGAAACAGATGCACCAGTTTTACTTGAATAATTCCCCTGACGCCACCATCGGCGAAGCTTCCACTTCCACTCCCACTATCAAGAATGGAATTCTCGGAAGGCAAATGCTCGACAAGAATGGGAAAACAGGCTCAACACCACAAAAGAGGCTTGATGATATGGATTCAATCAATAATCCATTGCATGTACCTAACGGACCAATCACAAGGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATGCGCAACGAGAGGCCGAGAATTTTGAACCCAAATTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTATTTTGGAAGATGGCACGGGGGACGAAAAAAGTGTGCAGAATTTGATCCTAGAAGGACCTCTTGAAGGACTGGAATTCCATAATTCTGTAAAGCGGAAGCGTGATTGGGACCGATTCTGTGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGAAGGAGACTTGTGGGAGCCTTTGGGAGAATTCTCTGAGATGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGACTAATTGGCCAAACTCATTGATCAAGTTTAGTCAACATTCGTTAACTGTGGGTCACTCCACTAAAGATCCACAGTTGCACTATTCTCACTATAGAATATTTCTGTGTCCACGGATATCAACCAAGCAGGTCCAACCACTAAACAGGAGTTCCTCTCAGGCTAGGAGAGGACGGCGCGCCTTTCTTCAAGCCCTAGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAG

Coding sequence (CDS)

ATGGTTCGTAGAGAACGGTTTCTTCAAGACCATGATATCAAGAAGAACGCAGAGTTTTTAAATGATAAATCAAAACTTTTGGCAGCTCTAGCGCATACTACCTCTGATGCAAACTTCCAAAGGATCCTTCAAATGGCGGCATCCTCGACAAGTGGTTCTCCAACCTCGTCTATCCAAGAAGAAGAAGAAGAAGCAGATCCAGAATATGATCTAGACGATCCATTTCTCGACTCACAACCTATTTTGGTGTTCCAGGCAGTAAGACCTAATGATGAGGTCGTGAGTCCGTTGAATGGAATTCTCGAAAGAAAAATGCTCGATAAGAATGGGAAAACAGGCTCAACACCACAAAAGAGGCTTGAGAAGGTATATCGATTTCTTGAAATAGAGGCACCAGTTTTTGATTTTCTTCTCGTTCGTGTGAGAGTAGAATGGAATTCTCGGAAGGAAAATGCTCAAGAAGAATGGGTAAACAGGCTCAACACCACAAAAGAGACTTGGGAAGGTATATATGAGGTGAATAAGGTCATCTTTAATAAGATAGACAAATATATCGATTTCTTGAAACAGATGCACCAGTTTTACTTGAATAATTCCCCTGACGCCACCATCGGCGAAGCTTCCACTTCCACTCCCACTATCAAGAATGGAATTCTCGGAAGGCAAATGCTCGACAAGAATGGGAAAACAGGCTCAACACCACAAAAGAGGCTTGATGATATGGATTCAATCAATAATCCATTGCATGTACCTAACGGACCAATCACAAGGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATGCGCAACGAGAGGCCGAGAATTTTGAACCCAAATTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTATTTTGGAAGATGGCACGGGGGACGAAAAAAGTGTGCAGAATTTGATCCTAGAAGGACCTCTTGAAGGACTGGAATTCCATAATTCTGTAAAGCGGAAGCGTGATTGGGACCGATTCTGTGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGAAGGAGACTTGTGGGAGCCTTTGGGAGAATTCTCTGAGATGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGACTAATTGGCCAAACTCATTGATCAAGTTTAGTCAACATTCGTTAACTGTGGGTCACTCCACTAAAGATCCACAGTTGCACTATTCTCACTATAGAATATTTCTGTGTCCACGGATATCAACCAAGCAGGTCCAACCACTAAACAGGAGTTCCTCTCAGGCTAGGAGAGGACGGCGCGCCTTTCTTCAAGCCCTAGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAG

Protein sequence

MVRRERFLQDHDIKKNAEFLNDKSKLLAALAHTTSDANFQRILQMAASSTSGSPTSSIQEEEEEADPEYDLDDPFLDSQPILVFQAVRPNDEVVSPLNGILERKMLDKNGKTGSTPQKRLEKVYRFLEIEAPVFDFLLVRVRVEWNSRKENAQEEWVNRLNTTKETWEGIYEVNKVIFNKIDKYIDFLKQMHQFYLNNSPDATIGEASTSTPTIKNGILGRQMLDKNGKTGSTPQKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNLILEGPLEGLEFHNSVKRKRDWDRFCEHHHYGYTGMTLRLLEEGDLWEPLGEFSEMGPNGPTDQKLQRYETNWPNSLIKFSQHSLTVGHSTKDPQLHYSHYRIFLCPRISTKQVQPLNRSSSQARRGRRAFLQALESALKGTHIYLPQ

Homology

[Close]

BLAST of Spg035716 vs. NCBI nr
Match: KAA0051909.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 9.9e-32
Identity = 75/91 (82.42%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 235 QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSS 294
           ++R DD+DS+NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSS
Sbjct: 898 KERGDDVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSS 957

Query: 295 ASQEENGVKMAREKLCILEDGTGDEKSVQNL 326
           ASQEE+GVKMAREKLC  EDGTG+EKSVQNL
Sbjct: 958 ASQEEHGVKMAREKLCNFEDGTGNEKSVQNL 988

[Close]

BLAST of Spg035716 vs. NCBI nr
Match: KAA0067206.1 (hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 1.3e-31
Identity = 86/154 (55.84%), Postives = 106/154 (68.83%), Query Frame = 0


Query: 173 VNKVIFNKIDKYIDFLKQMHQFYLNNSPDATIGEASTSTPTIKNGILGRQMLDKNGKTGS 232
           +  + F ++++++D  K   Q    + P   +   + +    K  + G + LD      +
Sbjct: 214 IANLFFREVERFLDQRKSKLQ-QRGDGPFQVLERINNN--AYKLDLSGNEDLDLR----T 273

Query: 233 TPQK-RLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYN 292
            P K R DD+DSINN LHVP GPIT+ KAKKIQEAFTLHVQKL NAQRE +NFEPKFLYN
Sbjct: 274 NPSKERGDDVDSINNLLHVPEGPITKRKAKKIQEAFTLHVQKLENAQREIKNFEPKFLYN 333

Query: 293 VSSASQEENGVKMAREKLCILEDGTGDEKSVQNL 326
           VSSASQEE+ +KMA EKLC LEDGTGDEKSVQNL
Sbjct: 334 VSSASQEEHEIKMAWEKLCSLEDGTGDEKSVQNL 360

[Close]

BLAST of Spg035716 vs. NCBI nr
Match: TYK26105.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 2.9e-31
Identity = 75/91 (82.42%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 235  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSS 294
            ++R DD+DS+NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSS
Sbjct: 1395 KERGDDVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSS 1454

Query: 295  ASQEENGVKMAREKLCILEDGTGDEKSVQNL 326
            ASQEE+ VKMAREKLC LEDGTG+EKSVQNL
Sbjct: 1455 ASQEEHEVKMAREKLCNLEDGTGNEKSVQNL 1485

[Close]

BLAST of Spg035716 vs. NCBI nr
Match: TYK02449.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 2.9e-31
Identity = 75/91 (82.42%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 235  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSS 294
            ++R DD+DS+NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSS
Sbjct: 1414 KERGDDVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSS 1473

Query: 295  ASQEENGVKMAREKLCILEDGTGDEKSVQNL 326
            ASQEE+GVKMAREKLC LEDGT +EKSVQNL
Sbjct: 1474 ASQEEHGVKMAREKLCNLEDGTRNEKSVQNL 1504

[Close]

BLAST of Spg035716 vs. NCBI nr
Match: KAA0059666.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-30
Identity = 74/91 (81.32%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 235  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSS 294
            ++R DD+D +NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSS
Sbjct: 1174 KERGDDVDLLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSS 1233

Query: 295  ASQEENGVKMAREKLCILEDGTGDEKSVQNL 326
            ASQEE+ VKMAREKLC LEDGTG+EKSVQNL
Sbjct: 1234 ASQEEHEVKMAREKLCNLEDGTGNEKSVQNL 1264

[Close]

BLAST of Spg035716 vs. ExPASy TrEMBL
Match: A0A5A7UEI2 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003620 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.8e-32
Identity = 75/91 (82.42%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 235 QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSS 294
           ++R DD+DS+NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSS
Sbjct: 898 KERGDDVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSS 957

Query: 295 ASQEENGVKMAREKLCILEDGTGDEKSVQNL 326
           ASQEE+GVKMAREKLC  EDGTG+EKSVQNL
Sbjct: 958 ASQEEHGVKMAREKLCNFEDGTGNEKSVQNL 988

[Close]

BLAST of Spg035716 vs. ExPASy TrEMBL
Match: A0A5A7VL78 (RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00080 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.2e-32
Identity = 86/154 (55.84%), Postives = 106/154 (68.83%), Query Frame = 0


Query: 173 VNKVIFNKIDKYIDFLKQMHQFYLNNSPDATIGEASTSTPTIKNGILGRQMLDKNGKTGS 232
           +  + F ++++++D  K   Q    + P   +   + +    K  + G + LD      +
Sbjct: 214 IANLFFREVERFLDQRKSKLQ-QRGDGPFQVLERINNN--AYKLDLSGNEDLDLR----T 273

Query: 233 TPQK-RLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYN 292
            P K R DD+DSINN LHVP GPIT+ KAKKIQEAFTLHVQKL NAQRE +NFEPKFLYN
Sbjct: 274 NPSKERGDDVDSINNLLHVPEGPITKRKAKKIQEAFTLHVQKLENAQREIKNFEPKFLYN 333

Query: 293 VSSASQEENGVKMAREKLCILEDGTGDEKSVQNL 326
           VSSASQEE+ +KMA EKLC LEDGTGDEKSVQNL
Sbjct: 334 VSSASQEEHEIKMAWEKLCSLEDGTGDEKSVQNL 360

[Close]

BLAST of Spg035716 vs. ExPASy TrEMBL
Match: A0A5D3DRJ1 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-31
Identity = 75/91 (82.42%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 235  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSS 294
            ++R DD+DS+NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSS
Sbjct: 1395 KERGDDVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSS 1454

Query: 295  ASQEENGVKMAREKLCILEDGTGDEKSVQNL 326
            ASQEE+ VKMAREKLC LEDGTG+EKSVQNL
Sbjct: 1455 ASQEEHEVKMAREKLCNLEDGTGNEKSVQNL 1485

[Close]

BLAST of Spg035716 vs. ExPASy TrEMBL
Match: A0A5D3BWE8 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-31
Identity = 75/91 (82.42%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 235  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSS 294
            ++R DD+DS+NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSS
Sbjct: 1414 KERGDDVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSS 1473

Query: 295  ASQEENGVKMAREKLCILEDGTGDEKSVQNL 326
            ASQEE+GVKMAREKLC LEDGT +EKSVQNL
Sbjct: 1474 ASQEEHGVKMAREKLCNLEDGTRNEKSVQNL 1504

[Close]

BLAST of Spg035716 vs. ExPASy TrEMBL
Match: A0A5A7UZP1 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G001110 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.9e-31
Identity = 74/91 (81.32%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 235  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSS 294
            ++R DD+D +NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSS
Sbjct: 1174 KERGDDVDLLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSS 1233

Query: 295  ASQEENGVKMAREKLCILEDGTGDEKSVQNL 326
            ASQEE+ VKMAREKLC LEDGTG+EKSVQNL
Sbjct: 1234 ASQEEHEVKMAREKLCNLEDGTGNEKSVQNL 1264

The following BLAST results are available for this feature:

BLAST of Spg035716 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051909.1	9.9e-32	82.42	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0067206.1	1.3e-31	55.84	hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]	[more]
TYK26105.1	2.9e-31	82.42	F15O4.13 [Cucumis melo var. makuwa]	[more]
TYK02449.1	2.9e-31	82.42	F15O4.13 [Cucumis melo var. makuwa]	[more]
KAA0059666.1	1.4e-30	81.32	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Spg035716 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg035716 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UEI2	4.8e-32	82.42	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VL78	6.2e-32	55.84	RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3DRJ1	1.4e-31	82.42	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 ...	[more]
A0A5D3BWE8	1.4e-31	82.42	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4...	[more]
A0A5A7UZP1	6.9e-31	81.32	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Spg035716 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg035716.1	Spg035716.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding