Spg035600 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035600
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold3: 3854247 .. 3854546 (-)
RNA-Seq ExpressionSpg035600
SyntenySpg035600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGGCTAATTCTTGCTACCCACGGTGGTGGCTCTGAAGAAGATTTCGCCTTGGTGAGCTCTGGCGGGCTATTTTTCCTTTCGGTCATCCTTGTATCCATCTCCCTCATATCAATGATAATATTTATTTGCGGTGACTTTGATGATGATCAACCGAGACGAAGACATTATGGTAGCGCTAGCGAAGGAATCCCAAGAGGAGGGTTTGGCATCCAAGCTGCAGGCTGGGTTGGCGGAGGTGGAGGTGGAGGAGGAGGTGTAGGCGGTGGCGGGGGCTGCGGCGGTCGTGGAGGTTAA

mRNA sequence

ATGGCAAGGCTAATTCTTGCTACCCACGGTGGTGGCTCTGAAGAAGATTTCGCCTTGGTGAGCTCTGGCGGGCTATTTTTCCTTTCGGTCATCCTTGTATCCATCTCCCTCATATCAATGATAATATTTATTTGCGGTGACTTTGATGATGATCAACCGAGACGAAGACATTATGGTAGCGCTAGCGAAGGAATCCCAAGAGGAGGGTTTGGCATCCAAGCTGCAGGCTGGGTTGGCGGAGGTGGAGGTGGAGGAGGAGGTGTAGGCGGTGGCGGGGGCTGCGGCGGTCGTGGAGGTTAA

Coding sequence (CDS)

ATGGCAAGGCTAATTCTTGCTACCCACGGTGGTGGCTCTGAAGAAGATTTCGCCTTGGTGAGCTCTGGCGGGCTATTTTTCCTTTCGGTCATCCTTGTATCCATCTCCCTCATATCAATGATAATATTTATTTGCGGTGACTTTGATGATGATCAACCGAGACGAAGACATTATGGTAGCGCTAGCGAAGGAATCCCAAGAGGAGGGTTTGGCATCCAAGCTGCAGGCTGGGTTGGCGGAGGTGGAGGTGGAGGAGGAGGTGTAGGCGGTGGCGGGGGCTGCGGCGGTCGTGGAGGTTAA

Protein sequence

MARLILATHGGGSEEDFALVSSGGLFFLSVILVSISLISMIIFICGDFDDDQPRRRHYGSASEGIPRGGFGIQAAGWVGGGGGGGGGVGGGGGCGGRGG
Homology
BLAST of Spg035600 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-05
Identity = 54/101 (53.47%), Postives = 62/101 (61.39%), Query Frame = 0

Query: 1   MARLILATHGGGSEEDFALVSSGGLFFLSVILVSISLISMIIFICGDFDDDQPRRRHYGS 60
           M R I A  GGG   D  L SSGGL  L+ +L+S+SL+SMIIF CGD   D  R+R+ G 
Sbjct: 1   MGRSIPAADGGGL-GDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGG 60

Query: 61  ASEGIPRG-GFGIQAAGWVGGGGGGGGGV-GGGGGCGGRGG 100
              G   G G  +   G  GGGGGG GGV GGGGGCGG GG
Sbjct: 61  CGGGGGGGCGGDVGGGGGCGGGGGGCGGVAGGGGGCGGGGG 100

BLAST of Spg035600 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-04
Identity = 55/98 (56.12%), Postives = 62/98 (63.27%), Query Frame = 0

Query: 1  MARLILATHGGGSE-EDFALVSSGGLFFLSVILVSISLISMIIFICGDFDDDQPRRRHYG 60
          M R ILA  GGG   +D  LVSSGGLF LS IL+SISL+SMIIF CG+ +D  P+R+  G
Sbjct: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSND--PKRKDGG 60

Query: 61 SASEGIPRGGFGIQAAGWVGGGGGGGGGVGGG-GGCGG 97
                  GG G       GG GGGGGG GGG GGCGG
Sbjct: 61 --------GGCG-------GGDGGGGGGCGGGCGGCGG 81

BLAST of Spg035600 vs. NCBI nr
Match: DAD43551.1 (TPA_asm: hypothetical protein HUJ06_001781 [Nelumbo nucifera])

HSP 1 Score: 53.9 bits (128), Expect = 9.1e-04
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 0

Query: 1   MARLILATHGGGSEEDFALVSSGGLFFLSVILVSISLISMIIFICGDFDDDQPRRRHYGS 60
           MAR ++A     +     + +SGGLF L V++VS+S+ISM+IF CGD +  + RRR +G 
Sbjct: 1   MARFVVAIGDSAANGGDVVQASGGLFLLCVVVVSLSVISMVIFACGDKEPRRGRRRKHGG 60

Query: 61  ASEGIPRGGFGIQAAGWVGGGGGGGGGVGGGGGCGGRGG 100
                  GG G    G  GG GGG GG GGGGGCGG GG
Sbjct: 61  GG-----GGDGCCCGGDGGGDGGGDGGGGGGGGCGGGGG 94

BLAST of Spg035600 vs. ExPASy TrEMBL
Match: F6GYM6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0054g00590 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 0

Query: 1  MARLILATHGGGSEEDFALVSSGGLFFLSVILVSISLISMIIFICGDFDD-DQPRRRHYG 60
          MAR+++A  GGG E      SSG LF L ++++S+S++SM+IF CG+      P++RH+G
Sbjct: 1  MARVLMAI-GGGGEVGMVASSSGALFLLCMVIMSLSILSMVIFACGESSSTPHPKKRHHG 60

Query: 61 SASEGIPRGGFGIQAAG-WVGGGGGGGGGVGGGGGCGGRG 99
              G+  GG  +   G   GGGGGGGGG GGGGG GG G
Sbjct: 61 G---GVDHGGGVVHHGGSGCGGGGGGGGGCGGGGGGGGGG 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6603228.13.7e-0553.47hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6604774.13.1e-0456.12hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori... [more]
DAD43551.19.1e-0447.47TPA_asm: hypothetical protein HUJ06_001781 [Nelumbo nucifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
F6GYM62.0e-0447.00Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0054g00590 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35420OS02G0198500 PROTEINcoord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035600.1Spg035600.1mRNA