Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGATCCCAAGAAAAATATGATTCCATAGAAGATGAGAATGAAGGTTGGACCCTTGTCGTTCGTAGCAAAAAGCGAAAGCAAAGTTATGCACGGAAAGAGTCCCGCTTATTTCAAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAGGGGAAAAAGAAGACAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTATTTTGCCCTCCACAACCTATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCAATGGTAGTCAAAGAGAGACACTTGAAACTGTCACGTGTCACATTGTGGACATGGTGGAAGATGATGATGTTCCTGCTAGCTCCTCGGCAACGGTGGTAGGTCCAGGAAACTTATCCTCCTTCAGCATAAATGACTTATTGTCACTTCCTCATGAGGCTAAAAGTTTCCTTGATGCATTGATGGAGTCTGATGATATAAACATCCCAACTCTGAGGCACGCACATGTGCTTCGTGTTGCATGTTTATAGGATTTTCTGATGAAGATTTGCTGCTAGGGTCGAAGCCTCATAATAAACCTTTTTTCGTTTCGGGATACATCCGAGAACAGAGGGTTAGTCGGATCCTCATCGATGATGGATCAACTGTCAACATAATGCCTAAGTCAACCATGAAGCAATTAGGCATCTCGATGGAAGAACTATCAAACAATAAATTGGTGATTCAATGTTTCAATCAAGGCGGACAACGAGCGATTGGCATGATACGCCTTGAACTCATCATTGGAGACTTAAAAACTGATACTTTGTTCCATGTAATAGATTCTAAGACCACCTATAAGCTGTTGTTAGGTCGTCCTTGGATCCATGGTAATGGAGTCATAACCTCTACATTGCACCAGTGCTTCAAATTCTATCAAGATGGCATCAAGAAAGTTGAAGCTGACACTAACCCATTTTCAGAAGCTGAGTCTCATTTCGCCGATGCAAAGTATTATCTGAAGAGTGAAAACACAGGGGAAACCGTGCCTGTAGAAATCCCCTTGATAAAAAAGAATGATAGACTCGATTTAGAGCCACAAGCAGATGCAAGAAAGGAAGCTATTGAAGATGTGAAGGCATCCGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCTTTTATCTCGACGTAAAAAGGGTGAATCGCCTTTCACTGAATGTCCAAAAAGCTTAAAGGTCGGTGACGTTGAAATTCTGAAGGAAAGTTTCACTACGCCTTTTACAAAGATCACAAAGCAAGAGGTTAAGAAACCTGAGAATGACTAGATAAAAATGATTTTGCCTAACAAACGAACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCGAAAGCGAGTTATGACTTCACAACTCATACTGAGTTTAAAAGTCTAAGGGTTTTTGATGAAAGACCTGAGCTCTATGCAACACAGAAGAAGCTTCTAAAAGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTTGGATATAAGTCGCCCGAGCCGGTTTGCATAACAAGAAGAGGAAAGGCGAAAGTAGCAGACATAAATCATATAACAATAGCGGAGGTTGATGACTCAAAAGAAAAAGATAGCGTTGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGTTAATTGTGAATGAAGCAGAAGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTCAGTTTTTCGAAGGTTAAGTATGTTCATTGGGGAAGAAGAGAGTACACTTTCAACTCCGGATGTCACACGACCTTCAACTTTTTGA
mRNA sequence
ATGAAGGGATCCCAAGAAAAATATGATTCCATAGAAGATGAGAATGAAGGTTGGACCCTTGTCGTTCGTAGCAAAAAGCGAAAGCAAAGTTATGCACGGAAAGAGTCCCGCTTATTTCAAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAGGGGAAAAAGAAGACAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTATTTTGCCCTCCACAACCTATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCAATGGTAGTCAAAGAGAGACACTTGAAACTGTCACGTGTCACATTGTGGACATGGTGGAAGATGATGATGTTCCTGCTAGCTCCTCGGCAACGGTGGTAGGTCCAGGAAACTTATCCTCCTTCAGCATAAATGACTTATTGTCACTTCCTCATGAGGCTAAAAAGCCACAAGCAGATGCAAGAAAGGAAGCTATTGAAGATGTGAAGGCATCCGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCTTTTATCTCGACGTAAAAAGGGTGAATCGCCTTTCACTGAATGTCCAAAAAGCTTAAAGAAGAAGCTTCTAAAAGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTTGGATATAAGTCGCCCGAGCCGGTTTGCATAACAAGAAGAGGAAAGGCGAAAGTAGCAGACATAAATCATATAACAATAGCGGAGGTTGATGACTCAAAAGAAAAAGATAGCGTTGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGTTAATTGTGAATGAAGCAGAAGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTCAGTTTTTCGAAGGTTAAGTATGTTCATTGGGGAAGAAGAGAGTACACTTTCAACTCCGGATGTCACACGACCTTCAACTTTTTGA
Coding sequence (CDS)
ATGAAGGGATCCCAAGAAAAATATGATTCCATAGAAGATGAGAATGAAGGTTGGACCCTTGTCGTTCGTAGCAAAAAGCGAAAGCAAAGTTATGCACGGAAAGAGTCCCGCTTATTTCAAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAGGGGAAAAAGAAGACAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTATTTTGCCCTCCACAACCTATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCAATGGTAGTCAAAGAGAGACACTTGAAACTGTCACGTGTCACATTGTGGACATGGTGGAAGATGATGATGTTCCTGCTAGCTCCTCGGCAACGGTGGTAGGTCCAGGAAACTTATCCTCCTTCAGCATAAATGACTTATTGTCACTTCCTCATGAGGCTAAAAAGCCACAAGCAGATGCAAGAAAGGAAGCTATTGAAGATGTGAAGGCATCCGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCTTTTATCTCGACGTAAAAAGGGTGAATCGCCTTTCACTGAATGTCCAAAAAGCTTAAAGAAGAAGCTTCTAAAAGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTTGGATATAAGTCGCCCGAGCCGGTTTGCATAACAAGAAGAGGAAAGGCGAAAGTAGCAGACATAAATCATATAACAATAGCGGAGGTTGATGACTCAAAAGAAAAAGATAGCGTTGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGTTAATTGTGAATGAAGCAGAAGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTCAGTTTTTCGAAGGTTAAGTATGTTCATTGGGGAAGAAGAGAGTACACTTTCAACTCCGGATGTCACACGACCTTCAACTTTTTGA
Protein sequence
MKGSQEKYDSIEDENEGWTLVVRSKKRKQSYARKESRLFQDSKRKVKSQRKKGKKKTRRSKPVMEESEDLFCPPQPITLAEYFPRRFLNGSQRETLETVTCHIVDMVEDDDVPASSSATVVGPGNLSSFSINDLLSLPHEAKKPQADARKEAIEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVLLSRRKKGESPFTECPKSLKKKLLKEGYSLPTTRKGLGYKSPEPVCITRRGKAKVADINHITIAEVDDSKEKDSVDQRTSVFRRIRPPVARASVFQRLIVNEAEEESAQPTNSSTRSSVFRRLSMFIGEEESTLSTPDVTRPSTF
Homology
BLAST of Spg035580 vs. NCBI nr
Match:
KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 177.6 bits (449), Expect = 1.8e-40
Identity = 156/481 (32.43%), Postives = 208/481 (43.24%), Query Frame = 0
Query: 4 SQEKYDSIEDENEGWTLVVRSKKRKQSYARKESRLFQDSKRKVKSQRKKGKKKTRRSKPV 63
SQEK IE+++EGWT+V R KKRK + +KESRL+ + +R K+Q+ K KKKTR+ K V
Sbjct: 467 SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLV 526
Query: 64 MEESEDLFCPPQPITLAEYFPRRFLNGSQRE----------------TLE-TVTCHIVDM 123
E+ +D + +TLA++FP RFL Q E T E T C +D
Sbjct: 527 HEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDF 586
Query: 124 VEDDDV------------------------------------------------PASSSA 183
++D + S+S
Sbjct: 587 SDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSK 646
Query: 184 TVVGPGNLSSFSINDL--------------LSLPHEAKKPQAD----ARKEAIEDVKASD 243
V+ N S + D + +P K+ A +E+ +
Sbjct: 647 LVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFH 706
Query: 244 LKKGETSTSLVKPKVVKDEKCSNSPILRYVLLSRRKKGESPFTECPKSLK---------- 303
K E STS K +V DEK SN PILRYV LSRRKKGESPF E P+ LK
Sbjct: 707 SGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKES 766
Query: 304 ------------------------------------------------------------ 325
Sbjct: 767 FTTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHEQ 826
BLAST of Spg035580 vs. NCBI nr
Match:
TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 172.2 bits (435), Expect = 7.7e-39
Identity = 160/561 (28.52%), Postives = 211/561 (37.61%), Query Frame = 0
Query: 4 SQEKYDSIEDENEGWTLVVRSKKRKQSYARKESRLFQDSKRKVKSQRKKGKKKTRRSKPV 63
SQEK IE+++E WT+V R KKRK + +KE R +++ +R K+Q+ K KKKTR+ K +
Sbjct: 363 SQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLKLM 422
Query: 64 MEESEDLFCPPQPITLAEYFPRRFLNGSQRETLETVTCHIVDMVEDDDVPASSSATVVGP 123
+E +D + ITLA++FP RFL Q E V CH ++ E++ +P S
Sbjct: 423 HKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVS 482
Query: 124 GNLSSFSINDLLSLPHE------------------------------------------- 183
+LS F+++DLLSLP E
Sbjct: 483 KDLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLG 542
Query: 184 ------------------------------------------------------------ 243
Sbjct: 543 SKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQ 602
Query: 244 --------AKKPQAD--------------------------------------------- 303
KK +AD
Sbjct: 603 GSQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSL 662
Query: 304 ARKEAIEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVLLSRRKKGESPFTECPK 332
A KE + +K E STS K ++ DEK SN ILRYV LSRRKKGESPF E P+
Sbjct: 663 ASKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQ 722
BLAST of Spg035580 vs. NCBI nr
Match:
KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa])
HSP 1 Score: 164.1 bits (414), Expect = 2.1e-36
Identity = 101/231 (43.72%), Postives = 128/231 (55.41%), Query Frame = 0
Query: 148 ARKEAIEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVLLSRRKKGESPFTECPK 207
A KE + + K E ST+ K ++ DEK SN PILRYV LSRRKKGESPF E P+
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247
Query: 208 SLK-------------------------------------------KKLLKEGYSLPTTR 267
LK KKLL+EG+ +P +R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307
Query: 268 KGLGYKSPEPVCITRRGKAKVADINHITIAEVDDSKEKDSVDQRTSVFRRIRPPVARASV 327
KGLGYKSPEP+ ITR+GK KV D NHIT+ EVD +EK+ +QRTS F RI P VARA V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367
Query: 328 FQRLIVNEAEEESAQPTNSSTRSSVFRRLSMFIGEEESTLSTPDVTRPSTF 336
F+RL + EA+ + Q T++ R S F+RL++ EE+ T T+PS F
Sbjct: 368 FERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAF 418
BLAST of Spg035580 vs. NCBI nr
Match:
TYK28162.1 (uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa])
HSP 1 Score: 160.6 bits (405), Expect = 2.3e-35
Identity = 101/241 (41.91%), Postives = 128/241 (53.11%), Query Frame = 0
Query: 148 ARKEAIEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVLLSRRKKGESPFTECPK 207
A KE + + K E ST+ K ++ DEK SN PILRYV LSRRKKGESPF E P+
Sbjct: 152 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 211
Query: 208 SLK-----------------------------------------------------KKLL 267
LK KKLL
Sbjct: 212 GLKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLL 271
Query: 268 KEGYSLPTTRKGLGYKSPEPVCITRRGKAKVADINHITIAEVDDSKEKDSVDQRTSVFRR 327
+EG+ +P +RKGLGYKSPEP+ ITR+GK KV D NHIT+ EVD +EK+ +QRTS F R
Sbjct: 272 REGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDR 331
Query: 328 IRPPVARASVFQRLIVNEAEEESAQPTNSSTRSSVFRRLSMFIGEEESTLSTPDVTRPST 336
I P VARA VF+RL + EAE + Q T++ + S F+RL++ EE+ T T+PS
Sbjct: 332 ISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKPSA 391
BLAST of Spg035580 vs. NCBI nr
Match:
KAA0043405.1 (hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa])
HSP 1 Score: 160.2 bits (404), Expect = 3.0e-35
Identity = 94/201 (46.77%), Postives = 122/201 (60.70%), Query Frame = 0
Query: 148 ARKEAIEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVLLSRRKKGESPFTECPK 207
A KE + + +KGE STS K ++ DEK SN ILRYV LSRR+KGESPF + P+
Sbjct: 56 ASKEPHKSIGTFHSRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQ 115
Query: 208 SLK-------------KKLLKEGYSLPTTRKGLGYKSPEPVCITRRGKAKVADINHITIA 267
LK KKLL+EG+ +P +RKG GYKSPEP+ I R+ K KV D NHIT+
Sbjct: 116 GLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVG 175
Query: 268 EVDDSKEKDSVDQRTSVFRRIRPPVARASVFQRLIVNEAEEESAQPTNSSTRSSVFRRLS 327
EVD +EK+ QR S F +IRP V R +VF+RL V + E + Q T+S + S +RL+
Sbjct: 176 EVDSMEEKEGGSQRISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLT 235
Query: 328 MFIGEEESTLSTPDVTRPSTF 336
M +E+ T TRPS F
Sbjct: 236 MTFKKEKCTCQALRATRPSAF 256
BLAST of Spg035580 vs. ExPASy TrEMBL
Match:
A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)
HSP 1 Score: 177.6 bits (449), Expect = 8.9e-41
Identity = 156/481 (32.43%), Postives = 208/481 (43.24%), Query Frame = 0
Query: 4 SQEKYDSIEDENEGWTLVVRSKKRKQSYARKESRLFQDSKRKVKSQRKKGKKKTRRSKPV 63
SQEK IE+++EGWT+V R KKRK + +KESRL+ + +R K+Q+ K KKKTR+ K V
Sbjct: 467 SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLV 526
Query: 64 MEESEDLFCPPQPITLAEYFPRRFLNGSQRE----------------TLE-TVTCHIVDM 123
E+ +D + +TLA++FP RFL Q E T E T C +D
Sbjct: 527 HEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDF 586
Query: 124 VEDDDV------------------------------------------------PASSSA 183
++D + S+S
Sbjct: 587 SDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSK 646
Query: 184 TVVGPGNLSSFSINDL--------------LSLPHEAKKPQAD----ARKEAIEDVKASD 243
V+ N S + D + +P K+ A +E+ +
Sbjct: 647 LVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFH 706
Query: 244 LKKGETSTSLVKPKVVKDEKCSNSPILRYVLLSRRKKGESPFTECPKSLK---------- 303
K E STS K +V DEK SN PILRYV LSRRKKGESPF E P+ LK
Sbjct: 707 SGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKES 766
Query: 304 ------------------------------------------------------------ 325
Sbjct: 767 FTTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHEQ 826
BLAST of Spg035580 vs. ExPASy TrEMBL
Match:
A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 3.7e-39
Identity = 160/561 (28.52%), Postives = 211/561 (37.61%), Query Frame = 0
Query: 4 SQEKYDSIEDENEGWTLVVRSKKRKQSYARKESRLFQDSKRKVKSQRKKGKKKTRRSKPV 63
SQEK IE+++E WT+V R KKRK + +KE R +++ +R K+Q+ K KKKTR+ K +
Sbjct: 363 SQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLKLM 422
Query: 64 MEESEDLFCPPQPITLAEYFPRRFLNGSQRETLETVTCHIVDMVEDDDVPASSSATVVGP 123
+E +D + ITLA++FP RFL Q E V CH ++ E++ +P S
Sbjct: 423 HKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVS 482
Query: 124 GNLSSFSINDLLSLPHE------------------------------------------- 183
+LS F+++DLLSLP E
Sbjct: 483 KDLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLG 542
Query: 184 ------------------------------------------------------------ 243
Sbjct: 543 SKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQ 602
Query: 244 --------AKKPQAD--------------------------------------------- 303
KK +AD
Sbjct: 603 GSQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSL 662
Query: 304 ARKEAIEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVLLSRRKKGESPFTECPK 332
A KE + +K E STS K ++ DEK SN ILRYV LSRRKKGESPF E P+
Sbjct: 663 ASKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQ 722
BLAST of Spg035580 vs. ExPASy TrEMBL
Match:
A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)
HSP 1 Score: 164.1 bits (414), Expect = 1.0e-36
Identity = 101/231 (43.72%), Postives = 128/231 (55.41%), Query Frame = 0
Query: 148 ARKEAIEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVLLSRRKKGESPFTECPK 207
A KE + + K E ST+ K ++ DEK SN PILRYV LSRRKKGESPF E P+
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247
Query: 208 SLK-------------------------------------------KKLLKEGYSLPTTR 267
LK KKLL+EG+ +P +R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307
Query: 268 KGLGYKSPEPVCITRRGKAKVADINHITIAEVDDSKEKDSVDQRTSVFRRIRPPVARASV 327
KGLGYKSPEP+ ITR+GK KV D NHIT+ EVD +EK+ +QRTS F RI P VARA V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367
Query: 328 FQRLIVNEAEEESAQPTNSSTRSSVFRRLSMFIGEEESTLSTPDVTRPSTF 336
F+RL + EA+ + Q T++ R S F+RL++ EE+ T T+PS F
Sbjct: 368 FERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAF 418
BLAST of Spg035580 vs. ExPASy TrEMBL
Match:
A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 1.1e-35
Identity = 101/241 (41.91%), Postives = 128/241 (53.11%), Query Frame = 0
Query: 148 ARKEAIEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVLLSRRKKGESPFTECPK 207
A KE + + K E ST+ K ++ DEK SN PILRYV LSRRKKGESPF E P+
Sbjct: 152 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 211
Query: 208 SLK-----------------------------------------------------KKLL 267
LK KKLL
Sbjct: 212 GLKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLL 271
Query: 268 KEGYSLPTTRKGLGYKSPEPVCITRRGKAKVADINHITIAEVDDSKEKDSVDQRTSVFRR 327
+EG+ +P +RKGLGYKSPEP+ ITR+GK KV D NHIT+ EVD +EK+ +QRTS F R
Sbjct: 272 REGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDR 331
Query: 328 IRPPVARASVFQRLIVNEAEEESAQPTNSSTRSSVFRRLSMFIGEEESTLSTPDVTRPST 336
I P VARA VF+RL + EAE + Q T++ + S F+RL++ EE+ T T+PS
Sbjct: 332 ISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKPSA 391
BLAST of Spg035580 vs. ExPASy TrEMBL
Match:
A0A5A7TPR5 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00040 PE=4 SV=1)
HSP 1 Score: 160.2 bits (404), Expect = 1.5e-35
Identity = 94/201 (46.77%), Postives = 122/201 (60.70%), Query Frame = 0
Query: 148 ARKEAIEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVLLSRRKKGESPFTECPK 207
A KE + + +KGE STS K ++ DEK SN ILRYV LSRR+KGESPF + P+
Sbjct: 56 ASKEPHKSIGTFHSRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQ 115
Query: 208 SLK-------------KKLLKEGYSLPTTRKGLGYKSPEPVCITRRGKAKVADINHITIA 267
LK KKLL+EG+ +P +RKG GYKSPEP+ I R+ K KV D NHIT+
Sbjct: 116 GLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVG 175
Query: 268 EVDDSKEKDSVDQRTSVFRRIRPPVARASVFQRLIVNEAEEESAQPTNSSTRSSVFRRLS 327
EVD +EK+ QR S F +IRP V R +VF+RL V + E + Q T+S + S +RL+
Sbjct: 176 EVDSMEEKEGGSQRISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLT 235
Query: 328 MFIGEEESTLSTPDVTRPSTF 336
M +E+ T TRPS F
Sbjct: 236 MTFKKEKCTCQALRATRPSAF 256
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0061113.1 | 1.8e-40 | 32.43 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp... | [more] |
| TYK05005.1 | 7.7e-39 | 28.52 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0055957.1 | 2.1e-36 | 43.72 | uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa] | [more] |
| TYK28162.1 | 2.3e-35 | 41.91 | uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa] | [more] |
| KAA0043405.1 | 3.0e-35 | 46.77 | hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BY54 | 8.9e-41 | 32.43 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3C0W6 | 3.7e-39 | 28.52 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7UMY2 | 1.0e-36 | 43.72 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
| A0A5D3DXC7 | 1.1e-35 | 41.91 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
| A0A5A7TPR5 | 1.5e-35 | 46.77 | RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
