Spg035487 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg035487
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Myb_DNA-bind_3 domain-containing protein
Location	scaffold3: 1762863 .. 1765693 (+)
RNA-Seq Expression	Spg035487
Synteny	Spg035487

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTCCCTCTCTCTCTTGTCTCTTTCTCCCTCTCGATCTCACCCTCTTTCTCTCTCTACTGTAAGGTTCGGTTTTGTCGCTCACCACTGCCCTCTTCCATCATCACTGCGCGCCTCCGCCATTGCAGATTCGCCGCACGCAGCCGTCTGCTTCACCACACGCCGCCGTCTGCTTCACCGCGCGTCGTCGTCTCACCTCACCGCACGCTGCCGTCGCATATCGCCTCCAGTGAGTTTCCTTTTGCTCTATCTCTCTCTCGTTTCTCTCTCACGACCTTACTCCCTCTCTCTATGGTAGATCTATAGCTCCGCCGCTGCCGCCACTGTGCAAAAGTGTCCGCTACCGCCTCAGACCCGTCATCGCCGTCGCGGACAGTCCTAGCGCTACTGCCGCCTTTCCAAATCTGTTCGTCACCTTTCAGATCTGTTCATTGCTTTTTAGATTTGTTCGTCGCCACCATTTGAATTTTCAACTTTCTTCTAAGGAATTAATTGGGTAAGGATTTCAGTTGGATTAAGCTTCGGTGTCCTTGTTTGGTCGTACTGTGTTAGGATCTGAGTTTGTTGTTAAATTATTAGGAGCTGTGGGATTGCTAGGAAACCCGTGGGTCAAGCTGTTTTGTTCTGTATTGAGCTATAAAGGTAAGATAACTTGCTGAATTATTATGTAATTATGCTTTGGTGTGACAATTGTGTTTCTGGCATATGAAATTACTATGAATGAGTTGAGACTGAAATGACCTGAGAATAATATGAATACTGTTGTTTACAAGAGTATGGTTGTAGTAAGTTTTTGTGTTATGAGGTGGATGTGAATGCATGCTTTTGGTATATTGCAGTTGGCTGGCATTGTAAGTAGACGACGGGAAGTTTGTGGTTTCTCTGTTTAGAAGTGTTGTTTGTCGTTTTTGTTTCTGTAATTGACTGAGTTGGGATAGTGCATATCGATTTAGCCTGTCAGTAATCTCTGAAAAAGAAAAGAATTTCATTAAGTAGGTTGCAGTTAAAATTAGCCTGCGTGCTAAGAGGCCTTAAAGGGGAAAGAGCAAGAAAGGGAAAAGAATAGGCTAGTTACTCTGGTAGGGGGTCGTGTCAGTTAATCACCTAGGACTGAGATGTATTAGACTAAAATGAGGAGCTAAATGGGTGGAACTTGGCTTCACAGACTAGGTGCCATTTACTAACTGTGGAAGTTAAATTCCAACGTAAAATCCATGGACGCCCACCAGTGAAATGGTAGTTTAGAGCACTACGCGCACCTTAGTGCCTTGATGGGTGAGACTTGGCTTCACTGACTGGGTGCCAAGTCTACTATCAGTAGGAGTAGAGATCTCCCAAAATATCCACCTGTGCACCTTCAGTGAGTTGGCAAACTTAAGTAGGTGACTTAATTGATCACGAGACCCAAACTACAGTATGATTGAAATGAAATGGAATGAAACATGATGACATAACCTTTAGGCCCTTAGCCCAAATAAGCTCTTGAATCCTTGGTTCTTGCATGTCTAGTAGTATTGTTACTTACTGAGTATTTTTTCTTAAATACTCATTTTTTTCCCTAACATGTAATTGCAGGTAAAGGCAAAGGTGTACAGAACGCGTGACGAAATGTTGCTGAACGAGCCATGGATTTCCTTAGGATAGACTTCCGCTTGTTATGTTTTCGAACTTCTTCTTTTTGCATTTGATATGTAATGTTTTAGGACTTATTCCGGTTGAGTTTTTTTTTAATGGCTAAATTTTTTCTTGTTCTGTTTTAATTGGGATCCCAGACTGAAAAGTTTCACTGATTTTCTAAGCTTGTTTTACTCTAAATGTTGTTCCATCGTCATTCTTTGTAAGTAAAATGAAATGCATGTGGTAATGGCCCTAGGATCTAGACATGAAATGTAGGGTCGTTACAAGTAGGCACTTTAATACAATTCTTAACTCTATGTTGCGATTACATGAGTTACTACTTAAACAACCTGAGCCAGTTTCTGCCACCTGCTTGGACGAAAAATGGAAGTGGTTTAAGGTAAATTTATATGTAGTTTTAATCCTATTTAAATATTAATAAGTGGTTTACATTGGATGTGACCTTAATTAATATAGAGTTTCCTTTGGATTTAGAATTTTCTAGGTGCATTAGATGAAACCTACATTAAAGTCAATTTAGGTATTCTTGATAGACCTAGTTACCGAACAAGGAAGAATGAAATTGCTACCAATGTGTTAGGAGTTTGTTCTCAAGATATGCAATTCATCTATGTTTTACCTGGATGGGAAGGTTCACCTGCTGACTCAAGAGTTTTACGAGATGCTATATCTAGAAGGAATGGATTAAAGATTCCAAAAGGTAACACATGTATGATGTTTGGATAGATATATAGTTTAGGTCGGACTATATAAATCAATTGAAACATGCTTTTTGTACATTCTCAAGGATTCAATTGGTTTATTTAGGTTGTTACTTCCGCTTATTATGTTTTCGAACTTCTTCTTTTTGCATTTGATATGTAATGTTTTAGGACTTATTCCGGTTGAGTTTTTTTTTTTTTTAATGGCTAAATTTTTTCTTGTTCTGTTTTAATTGGGATCCCAAACTGAAAAGTTTCACTGATTTTTTAAGCCTGTTTTACTCTACATGTTGTTCCATTATCATTCTTTGTAAGTAAAATGAAATGCATGTGGTAATGGCCCTAGGATCTAGACATGAAATGTAGGGTCGTTACAAGTAGGCACTTTAATACAATTCTTAACTCTGTGTTGCGATTACATGAGTTACTACTTAAACAACTTGAGCCAGTTTCTGCCACCTGCTTGGACGAAAAATGGAAGTGGTTTAAG

mRNA sequence

ATGTTTTCCCTCTCTCTCTTGTCTCTTTCTCCCTCTCGATCTCACCCTCTTTCTCTCTCTACTGTAAGGTTCGGTTTTGTCGCTCACCACTGCCCTCTTCCATCATCACTGCGCGCCTCCGCCATTGCAGATTCGCCGCACGCAGCCGTCTGCTTCACCACACGCCGCCGTCTGCTTCACCGCGCGTCGTCGTCTCACCTCACCGCACGCTGCCGTCGCATATCGCCTCCATTGGCTGGCATTGTAAAGGCAAAGGATCTAGACATGAAATGTAGGGTCGTTACAAGTAGGCACTTTAATACAATTCTTAACTCTATGTTGCGATTACATGAGTTACTACTTAAACAACCTGAGCCAGTTTCTGCCACCTGCTTGGACGAAAAATGGAAGTGGTTTAAGGATCTAGACATGAAATGTAGGGTCGTTACAAGTAGGCACTTTAATACAATTCTTAACTCTGTGTTGCGATTACATGAGTTACTACTTAAACAACTTGAGCCAGTTTCTGCCACCTGCTTGGACGAAAAATGGAAGTGGTTTAAG

Coding sequence (CDS)

ATGTTTTCCCTCTCTCTCTTGTCTCTTTCTCCCTCTCGATCTCACCCTCTTTCTCTCTCTACTGTAAGGTTCGGTTTTGTCGCTCACCACTGCCCTCTTCCATCATCACTGCGCGCCTCCGCCATTGCAGATTCGCCGCACGCAGCCGTCTGCTTCACCACACGCCGCCGTCTGCTTCACCGCGCGTCGTCGTCTCACCTCACCGCACGCTGCCGTCGCATATCGCCTCCATTGGCTGGCATTGTAAAGGCAAAGGATCTAGACATGAAATGTAGGGTCGTTACAAGTAGGCACTTTAATACAATTCTTAACTCTATGTTGCGATTACATGAGTTACTACTTAAACAACCTGAGCCAGTTTCTGCCACCTGCTTGGACGAAAAATGGAAGTGGTTTAAGGATCTAGACATGAAATGTAGGGTCGTTACAAGTAGGCACTTTAATACAATTCTTAACTCTGTGTTGCGATTACATGAGTTACTACTTAAACAACTTGAGCCAGTTTCTGCCACCTGCTTGGACGAAAAATGGAAGTGGTTTAAG

Protein sequence

MFSLSLLSLSPSRSHPLSLSTVRFGFVAHHCPLPSSLRASAIADSPHAAVCFTTRRRLLHRASSSHLTARCRRISPPLAGIVKAKDLDMKCRVVTSRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKDLDMKCRVVTSRHFNTILNSVLRLHELLLKQLEPVSATCLDEKWKWFK

Homology

[Close]

BLAST of Spg035487 vs. NCBI nr
Match: KAA0041970.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK17906.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-07
Identity = 25/39 (64.10%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 96  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD 135
           SRHFN +LN++LRLHE+LLKQP+PV+ +C  EKW+WF++
Sbjct: 59  SRHFNAVLNTVLRLHEILLKQPDPVTHSCSHEKWRWFQN 97

[Close]

BLAST of Spg035487 vs. NCBI nr
Match: KAA0045359.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 7.2e-07
Identity = 24/39 (61.54%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 96  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD 135
           SRHFN +LN++LR+HE+LLKQP+PV+ +C  EKW+WF++
Sbjct: 30  SRHFNAVLNAILRIHEILLKQPDPVTHSCSHEKWRWFQN 68

[Close]

BLAST of Spg035487 vs. NCBI nr
Match: XP_024950087.1 (uncharacterized protein LOC102629376 [Citrus sinensis])

HSP 1 Score: 64.7 bits (156), Expect = 9.4e-07
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 96  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKDLDMKCRVV 143
           SR+FN+ILN +LRLH++LL+ PEPV   C DE+WKWFK   ++ +V+
Sbjct: 130 SRYFNSILNGVLRLHDVLLRAPEPVPENCTDERWKWFKAWRVEVQVI 176

[Close]

BLAST of Spg035487 vs. NCBI nr
Match: KAA0063790.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-06
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 85  KDLDMKCRV----------VTSRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWF 133
           K  D+K RV            SRHFN +LN++LRLHE+LLKQP PV+ +C  EKW+WF
Sbjct: 80  KSYDVKNRVARRHFAKSGETVSRHFNVVLNAVLRLHEILLKQPNPVTHSCSHEKWQWF 137

[Close]

BLAST of Spg035487 vs. NCBI nr
Match: KAG6523854.1 (hypothetical protein ZIOFF_013741 [Zingiber officinale])

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-06
Identity = 37/94 (39.36%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 96  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKDLDMKCRV------VTSRHFNT 155
           SR F+ +LNS+LRLH +LLK+PEP+   C DE+WKWFK L M+ ++      V S     
Sbjct: 59  SRQFHLVLNSVLRLHNILLKKPEPIPENCTDERWKWFK-LSMEGKIPKIVEQVESSMAPK 118

Query: 156 ILNSVLRLHELLLKQLEPVSATCL-----DEKWK 179
                     L  KQ + V   CL     D  WK
Sbjct: 119 FKRKTQNTKHLWTKQEDAVLVDCLVELSKDSAWK 151

[Close]

BLAST of Spg035487 vs. ExPASy TrEMBL
Match: A0A5A7TF70 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001930 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-07
Identity = 25/39 (64.10%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 96  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD 135
           SRHFN +LN++LRLHE+LLKQP+PV+ +C  EKW+WF++
Sbjct: 59  SRHFNAVLNTVLRLHEILLKQPDPVTHSCSHEKWRWFQN 97

[Close]

BLAST of Spg035487 vs. ExPASy TrEMBL
Match: A0A5A7TVU4 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001380 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07
Identity = 24/39 (61.54%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 96  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD 135
           SRHFN +LN++LR+HE+LLKQP+PV+ +C  EKW+WF++
Sbjct: 30  SRHFNAVLNAILRIHEILLKQPDPVTHSCSHEKWRWFQN 68

[Close]

BLAST of Spg035487 vs. ExPASy TrEMBL
Match: A0A5A7V9B2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00040 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.8e-07
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 85  KDLDMKCRV----------VTSRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWF 133
           K  D+K RV            SRHFN +LN++LRLHE+LLKQP PV+ +C  EKW+WF
Sbjct: 80  KSYDVKNRVARRHFAKSGETVSRHFNVVLNAVLRLHEILLKQPNPVTHSCSHEKWQWF 137

[Close]

BLAST of Spg035487 vs. ExPASy TrEMBL
Match: A0A5D3C603 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00490 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.8e-07
Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 96  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWF 133
           SRHFN +LN++LRLHE+LLKQP PV+ +C  EKW+WF
Sbjct: 104 SRHFNVVLNAVLRLHEILLKQPNPVTHSCSHEKWQWF 140

[Close]

BLAST of Spg035487 vs. ExPASy TrEMBL
Match: A0A5E4GB10 (PREDICTED: ALP1 (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B007110 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-06
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 93  VVTSRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD 135
           V  SR+FN +LN++LRLHE+LLK P+PV   C +E+WKWFK+
Sbjct: 56  VTVSRYFNLVLNAVLRLHEILLKVPDPVPNNCTEERWKWFKN 97

The following BLAST results are available for this feature:

BLAST of Spg035487 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041970.1	4.2e-07	64.10	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK17906.1 putative nucleas...	[more]
KAA0045359.1	7.2e-07	61.54	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
XP_024950087.1	9.4e-07	55.32	uncharacterized protein LOC102629376 [Citrus sinensis]	[more]
KAA0063790.1	1.6e-06	51.72	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAG6523854.1	1.6e-06	39.36	hypothetical protein ZIOFF_013741 [Zingiber officinale]	[more]

BLAST of Spg035487 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg035487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TF70	2.0e-07	64.10	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7TVU4	3.5e-07	61.54	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7V9B2	7.8e-07	51.72	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3C603	7.8e-07	67.57	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5E4GB10	1.0e-06	59.52	PREDICTED: ALP1 (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B007110 PE=4 SV=1	[more]

BLAST of Spg035487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 143..181 coord: 95..134
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 143..181 coord: 95..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg035487.1	Spg035487.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding