Spg035474 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg035474
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Small heat shock protein
Location	scaffold3: 1120116 .. 1120553 (-)
RNA-Seq Expression	Spg035474
Synteny	Spg035474

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAACTCTTTCCTCTTCACCTTCGCCCCTGTTCTTCTTCAAACCCAGATCCCCTACGAAACCCGCACCCAGCCGAGTCTCTATCCCGCCTTTCAGGGTGAGAGCTGAGGCTGATGGCGACCACACCAAAGACACGTCTTTGGATGTCCATGTCAATCAAGGCGTGGAGAGGCGGCCCGAGCCCAGGAGGCTGGCCCTGGATGTTTCACCTTATGGCAAGTCCTCTCAACACTTAAATTAACTAAAAAACTCATACCCATTTGTCGAACTGAGATTCATTTAGTTACCCTTTTGCAGGAATCTTAGACCCCCTATCGCCAATGAGGACGATGAGGCAAATGCTGGACACAGTGGACAGGCTGTTCGACGACGCAATGCTGACACCAGGATGGAGGTGGAGCAGAGGAGAGGTGCGAGCCCCTTGGGACATTGA

mRNA sequence

ATGGCTTCAACTCTTTCCTCTTCACCTTCGCCCCTGTTCTTCTTCAAACCCAGATCCCCTACGAAACCCGCACCCAGCCGAGTCTCTATCCCGCCTTTCAGGGTGAGAGCTGAGGCTGATGGCGACCACACCAAAGACACGTCTTTGGATGTCCATGTCAATCAAGGCGTGGAGAGGCGGCCCGAGCCCAGGAGGCTGGCCCTGGATGTTTCACCTTATGGCAAGAATCTTAGACCCCCTATCGCCAATGAGGACGATGAGGCAAATGCTGGACACAGTGGACAGGCTGTTCGACGACGCAATGCTGACACCAGGATGGAGGTGGAGCAGAGGAGAGGTGCGAGCCCCTTGGGACATTGA

Coding sequence (CDS)

ATGGCTTCAACTCTTTCCTCTTCACCTTCGCCCCTGTTCTTCTTCAAACCCAGATCCCCTACGAAACCCGCACCCAGCCGAGTCTCTATCCCGCCTTTCAGGGTGAGAGCTGAGGCTGATGGCGACCACACCAAAGACACGTCTTTGGATGTCCATGTCAATCAAGGCGTGGAGAGGCGGCCCGAGCCCAGGAGGCTGGCCCTGGATGTTTCACCTTATGGCAAGAATCTTAGACCCCCTATCGCCAATGAGGACGATGAGGCAAATGCTGGACACAGTGGACAGGCTGTTCGACGACGCAATGCTGACACCAGGATGGAGGTGGAGCAGAGGAGAGGTGCGAGCCCCTTGGGACATTGA

Protein sequence

MASTLSSSPSPLFFFKPRSPTKPAPSRVSIPPFRVRAEADGDHTKDTSLDVHVNQGVERRPEPRRLALDVSPYGKNLRPPIANEDDEANAGHSGQAVRRRNADTRMEVEQRRGASPLGH

Homology

[Close]

BLAST of Spg035474 vs. NCBI nr
Match: ADU55784.1 (HSP25.5 [Citrullus lanatus])

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-16
Identity = 57/81 (70.37%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MASTLSSSPSPLFFFKPRSPTKPAPSRVSIPPFRVRAE--ADGDHTKDTSLDVHVN---Q 60
          MASTLSSSPSPL  FKPR   K  P+RV++ P RVRAE  A GDH KDTSL+VHVN   Q
Sbjct: 1  MASTLSSSPSPLLSFKPRPLKKTPPARVTVLPLRVRAEAGAGGDHNKDTSLEVHVNPSAQ 60

Query: 61 G--VERRPEPRRLALDVSPYG 75
          G  VERRP P+RLALDVSPYG
Sbjct: 61 GTSVERRPGPKRLALDVSPYG 81

[Close]

BLAST of Spg035474 vs. NCBI nr
Match: XP_022974357.1 (small heat shock protein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-14
Identity = 55/83 (66.27%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 1  MASTLSSSPSPLFFFKPRSPTKPAPSRVSIPPFRVRAE--ADGDHTKDTSLDVHVN---- 60
          MASTLSSS SPL  FKPR   K  P R++  PFRVRAE  A GDH+KDTSL+VHVN    
Sbjct: 1  MASTLSSSASPLLSFKPRPLKKAPPPRLTSLPFRVRAEAGAGGDHSKDTSLEVHVNPSGQ 60

Query: 61 -QG--VERRPEPRRLALDVSPYG 75
           QG  VERRP P+RLA+DVSPYG
Sbjct: 61 SQGTSVERRPGPKRLAMDVSPYG 83

[Close]

BLAST of Spg035474 vs. NCBI nr
Match: XP_038875982.1 (small heat shock protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-14
Identity = 54/83 (65.06%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1  MASTLSSSPSPLFFFKPRSPTKPAPSRVSIPPFRVRAE--ADGDHTKDTSLDVHVN---- 60
          MASTLSSSPSPL  FKPR   K  P+RV++ P RV+AE  A  DH KD SL+VHVN    
Sbjct: 1  MASTLSSSPSPLLSFKPRPLKKTPPARVTVLPPRVKAEAGAGSDHNKDASLEVHVNPSGQ 60

Query: 61 -QG--VERRPEPRRLALDVSPYG 75
           QG  VERRP P+RLALDVSPYG
Sbjct: 61 GQGTSVERRPGPKRLALDVSPYG 83

[Close]

BLAST of Spg035474 vs. NCBI nr
Match: XP_023551613.1 (small heat shock protein, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 88.2 bits (217), Expect = 5.2e-14
Identity = 54/83 (65.06%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1  MASTLSSSPSPLFFFKPRSPTKPAPSRVSIPPFRVRAE--ADGDHTKDTSLDVHVN---- 60
          MASTLSSS SPL  FKPR   K  P R++  PFRVRAE  A GDH+KDTSL+VHVN    
Sbjct: 1  MASTLSSSASPLLSFKPRPLKKAPPPRLTSLPFRVRAEAGAGGDHSKDTSLEVHVNPSGQ 60

Query: 61 -QG--VERRPEPRRLALDVSPYG 75
           QG  VERR  P+RLA+DVSPYG
Sbjct: 61 SQGTSVERRSSPKRLAMDVSPYG 83

[Close]

BLAST of Spg035474 vs. NCBI nr
Match: KAG6579295.1 (Small heat shock protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 5.2e-14
Identity = 54/83 (65.06%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1  MASTLSSSPSPLFFFKPRSPTKPAPSRVSIPPFRVRAE--ADGDHTKDTSLDVHVN---- 60
          MASTLSSS SPL  FKPR   K  P R++  PFRVRAE  A GDH+KDTSL+VHVN    
Sbjct: 1  MASTLSSSASPLLSFKPRPLKKAPPPRLTSLPFRVRAEAGAGGDHSKDTSLEVHVNPSGQ 60

Query: 61 -QG--VERRPEPRRLALDVSPYG 75
           QG  VERR  P+RLA+DVSPYG
Sbjct: 61 SQGTSVERRSSPKRLAMDVSPYG 83

[Close]

BLAST of Spg035474 vs. ExPASy Swiss-Prot
Match: P30222 (Small heat shock protein, chloroplastic OS=Petunia hybrida OX=4102 GN=HSP22 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.9e-04
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 31 PPFRVRAEADGDHTKDTSLDVHV--------NQG--VERRPEPRRLALDVSPYG 75
          P  R+ A+A GD+ KDTS+DVHV        NQG  VERR  PRR+ALDVSP+G
Sbjct: 49 PASRLVAQATGDN-KDTSVDVHVSNNNQGGNNQGSAVERR--PRRMALDVSPFG 99

[Close]

BLAST of Spg035474 vs. ExPASy TrEMBL
Match: H6TB37 (HSP25.5 OS=Citrullus lanatus OX=3654 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.3e-17
Identity = 57/81 (70.37%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MASTLSSSPSPLFFFKPRSPTKPAPSRVSIPPFRVRAE--ADGDHTKDTSLDVHVN---Q 60
          MASTLSSSPSPL  FKPR   K  P+RV++ P RVRAE  A GDH KDTSL+VHVN   Q
Sbjct: 1  MASTLSSSPSPLLSFKPRPLKKTPPARVTVLPLRVRAEAGAGGDHNKDTSLEVHVNPSAQ 60

Query: 61 G--VERRPEPRRLALDVSPYG 75
          G  VERRP P+RLALDVSPYG
Sbjct: 61 GTSVERRPGPKRLALDVSPYG 81

[Close]

BLAST of Spg035474 vs. ExPASy TrEMBL
Match: A0A6J1IA25 (small heat shock protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111472985 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.1e-15
Identity = 55/83 (66.27%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 1  MASTLSSSPSPLFFFKPRSPTKPAPSRVSIPPFRVRAE--ADGDHTKDTSLDVHVN---- 60
          MASTLSSS SPL  FKPR   K  P R++  PFRVRAE  A GDH+KDTSL+VHVN    
Sbjct: 1  MASTLSSSASPLLSFKPRPLKKAPPPRLTSLPFRVRAEAGAGGDHSKDTSLEVHVNPSGQ 60

Query: 61 -QG--VERRPEPRRLALDVSPYG 75
           QG  VERRP P+RLA+DVSPYG
Sbjct: 61 SQGTSVERRPGPKRLAMDVSPYG 83

[Close]

BLAST of Spg035474 vs. ExPASy TrEMBL
Match: A0A6J1E6G1 (small heat shock protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430395 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.5e-14
Identity = 54/83 (65.06%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1  MASTLSSSPSPLFFFKPRSPTKPAPSRVSIPPFRVRAE--ADGDHTKDTSLDVHVN---- 60
          MASTLSSS SPL  FKPR   K  P R++  PFRVRAE  A GDH+KDTSL+VHVN    
Sbjct: 1  MASTLSSSASPLLSFKPRPLKKAPPPRLTSLPFRVRAETGAGGDHSKDTSLEVHVNPSGQ 60

Query: 61 -QG--VERRPEPRRLALDVSPYG 75
           QG  VERR  P+RLA+DVSPYG
Sbjct: 61 SQGTSVERRSSPKRLAMDVSPYG 83

[Close]

BLAST of Spg035474 vs. ExPASy TrEMBL
Match: A0A1S3AV56 (small heat shock protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483006 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 53/83 (63.86%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1  MASTLSSSPSPLFFFKPRSPTKPAPSRVSIPPFRVRAE--ADGDHTKDTSLDVHVN---- 60
          MASTLS SPSPL  FKPR   K    RV++ P RVRAE  A GD++KDTSL+VHVN    
Sbjct: 1  MASTLSYSPSPLLSFKPRPLKKIPLPRVTVLPLRVRAEAGASGDNSKDTSLEVHVNPSGQ 60

Query: 61 -QG--VERRPEPRRLALDVSPYG 75
           QG  VERRP P+RLALD+SPYG
Sbjct: 61 GQGTSVERRPGPKRLALDISPYG 83

[Close]

BLAST of Spg035474 vs. ExPASy TrEMBL
Match: A0A5A7TLQ6 (Small heat shock protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00030 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.2e-13
Identity = 52/82 (63.41%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 1  MASTLSSSPSPLFFFKPRSPTKPAPSRVSIPPFRVRAE--ADGDHTKDTSLDVHVN---- 60
          MASTLS SPSPL  FKPR   K    RV++ P RVRAE  A GD++KDTSL+VHVN    
Sbjct: 1  MASTLSYSPSPLLSFKPRPLKKIPLPRVTVLPLRVRAEAGASGDNSKDTSLEVHVNPSGQ 60

Query: 61 -QG--VERRPEPRRLALDVSPY 74
           QG  VERRP P+RLALD+SPY
Sbjct: 61 GQGTSVERRPGPKRLALDISPY 82

The following BLAST results are available for this feature:

BLAST of Spg035474 vs. NCBI nr


Match Name	E-value	Identity	Description
ADU55784.1	1.9e-16	70.37	HSP25.5 [Citrullus lanatus]	[more]
XP_022974357.1	1.1e-14	66.27	small heat shock protein, chloroplastic [Cucurbita maxima]	[more]
XP_038875982.1	4.0e-14	65.06	small heat shock protein, chloroplastic [Benincasa hispida]	[more]
XP_023551613.1	5.2e-14	65.06	small heat shock protein, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG6579295.1	5.2e-14	65.06	Small heat shock protein, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of Spg035474 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30222	3.9e-04	57.41	Small heat shock protein, chloroplastic OS=Petunia hybrida OX=4102 GN=HSP22 PE=2...	[more]

BLAST of Spg035474 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
H6TB37	9.3e-17	70.37	HSP25.5 OS=Citrullus lanatus OX=3654 PE=2 SV=1	[more]
A0A6J1IA25	5.1e-15	66.27	small heat shock protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111472...	[more]
A0A6J1E6G1	2.5e-14	65.06	small heat shock protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A1S3AV56	1.6e-13	63.86	small heat shock protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483006 ...	[more]
A0A5A7TLQ6	6.2e-13	63.41	Small heat shock protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Spg035474 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg035474.1	Spg035474.1	mRNA