Spg035466 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035466
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold3: 883448 .. 884994 (-)
RNA-Seq ExpressionSpg035466
SyntenySpg035466
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGCCCAATTCTGAAGAAGGCCTAGCCGAGGCTACCATTGATCAGCCAGTTGAGGAGGTTTTTGAGCCTCTATTCACGAATGACCCACTAGCAGCTGATAGGTCCTCTTTAGGAGAGAAGAGGGAAGAAGAGGAAAAAGAAGATGAGGAGGTCGAGACCTCCACAGACTCTGATACAGAATCTGATTCAGAGATAAGGGAGCTGGATGGTGACCAAGTCCCTATCTCTGTAGCGTTGAGAAGAAAGAGGAAGAGAGAAATTAAGGCTGAGAGGAGGACAAAGAACAAGAATGACCCCATATTTGCCAAGAGGCCGAGGACAAGGTCCATGGACGCCTCTCCTGCAATTCCTCCTACTACCTCACCCGCCAAGCCAAAGGGTAAATCACCCAAGGCCGCATCTCCCAGAAATCTATTCCCTGAGGTATTTAGAGATGTTAATTTTCAGGAAAGGATGGATATCATGAAGAAGAGAGATTTCCTCAATGAAAAAGGATTCTCTAATAGAGCAGGAGCACTGCCAGAGTTCGTGAGCAGGATCATATTTCAATACAAATGACAGGACTTCTGTGCTCACCCTCAGGAGGCTGTTGTGCCTCTAGTTCGTGAATTCTACGCTGGCCTGAGGGAGGAAAGTATTAGCATGGCGGTTGTGAGGGGGAAGATGGTCAGTTTCTCCTCAGTCGACATCAACAGGGTGTACAGGATCAAGACACCCCTGAATCCGAGAGGAAATGATGTGATAAGGAACCCTTCGGCCAAGCAGATGAAAGAAGCTCTTAAACTTGTGGCCAATAAGGGGTTCAATGGAAAGAATCACAGACAAAAGTGAAGTCTTTAGTGCCAAGCGACCTAAAGCCAGAATCGGCAGTTTGGCTTCACTTCATCAAGAACCGTTTGATGCCAACCACCCATGATAGCACGATTTCAGTGGATAGAGTGATGCTACTCTATTTCTTTATAAAGGGGTTGGAAATTAACGTAGGGAGCATTATCAGGGACAAAATCTTAGCCTGTGGGAGAAAGCGAGCAGGCAAGCTTTTCTTTGGATCACTCATCACCCAGCTTTGCCAAAGGGTGAAGATCGTTCCAAGCAAGGACGAGGAGCGTCACTTCTTCAAGCCGACCATCGACCTGTCCTTGATTGGAAAGCTCCAACAGAACAACATCTAAAGGAAAGACAAAGCCTCTACATCTCAGGCTACTCCACCTACAGGGCCGAATGTAGCTTCTCCATCCCAACACGCTCCTTTCACAGGGCCTTCACCATCATCTGAAGCCCTAGCTATTGCCTACCGCCACCTACATCAAATCAGGGAGAACCTGAAGACATATTGGGCGTATGCAAAGGAGAGGGATGAAGCCATTAGAGAGTTCTATCTCTCTATTGCCCCGAGTATTGCTCCTTCCCTAGATCGCTGCTGCCTCCGGAAGAGAAGGATTCTAATGAAGAGGAGGACGATGAAAATGATGATGAAGATGATGAAGAGAAAGCGAGTTTCTTGGACGAGGAATAGGGGGAGTTTTCTGATCCCCTTTGACTGA

mRNA sequence

ATGCGGCCCAATTCTGAAGAAGGCCTAGCCGAGGCTACCATTGATCAGCCAGTTGAGGAGGTTTTTGAGCCTCTATTCACGAATGACCCACTAGCAGCTGATAGGTCCTCTTTAGGAGAGAAGAGGGAAGAAGAGGAAAAAGAAGATGAGGAGGTCGAGACCTCCACAGACTCTGATACAGAATCTGATTCAGAGATAAGGGAGCTGGATGGTGACCAAGTCCCTATCTCTGTAGCGTTGAGAAGAAAGAGGAAGAGAGAAATTAAGGCTGAGAGGAGGACAAAGAACAAGAATGACCCCATATTTGCCAAGAGGCCGAGGACAAGGTCCATGGACGCCTCTCCTGCAATTCCTCCTACTACCTCACCCGCCAAGCCAAAGGGTAAATCACCCAAGGCCGCATCTCCCAGAAATCTATTCCCTGAGGACTTCTGTGCTCACCCTCAGGAGGCTGTTGTGCCTCTAGTTCGTGAATTCTACGCTGGCCTGAGGGAGGAAAGTATTAGCATGGCGGTTGTGAGGGGGAAGATGGTCAGTTTCTCCTCAGTCGACATCAACAGGGTGTACAGGATCAAGACACCCCTGAATCCGAGAGGAAATGATGTGATAAGGAACCCTTCGGCCAAGCAGATGAAAGAAGCTCTTAAACTTGTGGCCAATAAGGGGTTCAATGGAAAGAATCACAGACAAAAGAAAGACAAAGCCTCTACATCTCAGGCTACTCCACCTACAGGGCCGAATGTAGCTTCTCCATCCCAACACGCTCCTTTCACAGGGCCTTCACCATCATCTGAAGCCCTAGCTATTGCCTACCGCCACCTACATCAAATCAGGGAGAACCTGAAGACATATTGGGCGTATGCAAAGGAGAGGGATGAAGCCATTAGAGAGTTCTATCTCTCTATTGCCCCGAGTATTGCTCCTTCCCTAGATCGCTGCTGCCTCCGGAAGAGAAGGATTCTAATGAAGAGGAGGACGATGAAAATGATGATGAAGATGATGAAGAGAAAGCGAGTTTCTTGGACGAGGAATAGGGGGAGTTTTCTGATCCCCTTTGACTGA

Coding sequence (CDS)

ATGCGGCCCAATTCTGAAGAAGGCCTAGCCGAGGCTACCATTGATCAGCCAGTTGAGGAGGTTTTTGAGCCTCTATTCACGAATGACCCACTAGCAGCTGATAGGTCCTCTTTAGGAGAGAAGAGGGAAGAAGAGGAAAAAGAAGATGAGGAGGTCGAGACCTCCACAGACTCTGATACAGAATCTGATTCAGAGATAAGGGAGCTGGATGGTGACCAAGTCCCTATCTCTGTAGCGTTGAGAAGAAAGAGGAAGAGAGAAATTAAGGCTGAGAGGAGGACAAAGAACAAGAATGACCCCATATTTGCCAAGAGGCCGAGGACAAGGTCCATGGACGCCTCTCCTGCAATTCCTCCTACTACCTCACCCGCCAAGCCAAAGGGTAAATCACCCAAGGCCGCATCTCCCAGAAATCTATTCCCTGAGGACTTCTGTGCTCACCCTCAGGAGGCTGTTGTGCCTCTAGTTCGTGAATTCTACGCTGGCCTGAGGGAGGAAAGTATTAGCATGGCGGTTGTGAGGGGGAAGATGGTCAGTTTCTCCTCAGTCGACATCAACAGGGTGTACAGGATCAAGACACCCCTGAATCCGAGAGGAAATGATGTGATAAGGAACCCTTCGGCCAAGCAGATGAAAGAAGCTCTTAAACTTGTGGCCAATAAGGGGTTCAATGGAAAGAATCACAGACAAAAGAAAGACAAAGCCTCTACATCTCAGGCTACTCCACCTACAGGGCCGAATGTAGCTTCTCCATCCCAACACGCTCCTTTCACAGGGCCTTCACCATCATCTGAAGCCCTAGCTATTGCCTACCGCCACCTACATCAAATCAGGGAGAACCTGAAGACATATTGGGCGTATGCAAAGGAGAGGGATGAAGCCATTAGAGAGTTCTATCTCTCTATTGCCCCGAGTATTGCTCCTTCCCTAGATCGCTGCTGCCTCCGGAAGAGAAGGATTCTAATGAAGAGGAGGACGATGAAAATGATGATGAAGATGATGAAGAGAAAGCGAGTTTCTTGGACGAGGAATAGGGGGAGTTTTCTGATCCCCTTTGACTGA

Protein sequence

MRPNSEEGLAEATIDQPVEEVFEPLFTNDPLAADRSSLGEKREEEEKEDEEVETSTDSDTESDSEIRELDGDQVPISVALRRKRKREIKAERRTKNKNDPIFAKRPRTRSMDASPAIPPTTSPAKPKGKSPKAASPRNLFPEDFCAHPQEAVVPLVREFYAGLREESISMAVVRGKMVSFSSVDINRVYRIKTPLNPRGNDVIRNPSAKQMKEALKLVANKGFNGKNHRQKKDKASTSQATPPTGPNVASPSQHAPFTGPSPSSEALAIAYRHLHQIRENLKTYWAYAKERDEAIREFYLSIAPSIAPSLDRCCLRKRRILMKRRTMKMMMKMMKRKRVSWTRNRGSFLIPFD
Homology
[Close]
BLAST of Spg035466 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-04
Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = 0 

Query: 142 EDFCAHPQEAVVPLVREFYAGLREESISMAVVRGKMVSFSSVDINRVYRIKTPLNPRGND 201
           + FCAHP++ +VPLVREFYA L +   +   VRG  VS+S   IN V+ +  P++   ++
Sbjct: 73  KQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGDPVDEH-SE 132

Query: 202 VIRNPSAKQMKEALKLVANKG 223
            I+N + + +   L+ VA  G
Sbjct: 133 FIQNITQQDLITVLETVAAAG 152

[Close]
BLAST of Spg035466 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 55.8 bits (133), Expect = 8.5e-04
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 0 

Query: 142 EDFCAHPQEAVVPLVREFYAGLREESISMAVVRGKMVSFSSVDINRVYRIKTPLNPRGND 201
           + FCAHP++ +VPLVREFYA L +   +   VRG  VS+S   IN V+ +  P++   ++
Sbjct: 64  KQFCAHPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGDPVDEH-SE 123

Query: 202 VIRNPSAKQMKEALKLVANKG 223
            I N +   +   L+ VA  G
Sbjct: 124 FIENITEHDLITVLETVAVAG 143

[Close]
BLAST of Spg035466 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.3e-05
Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = 0 

Query: 142 EDFCAHPQEAVVPLVREFYAGLREESISMAVVRGKMVSFSSVDINRVYRIKTPLNPRGND 201
           + FCAHP++ +VPLVREFYA L +   +   VRG  VS+S   IN V+ +  P++   ++
Sbjct: 73  KQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGDPVDEH-SE 132

Query: 202 VIRNPSAKQMKEALKLVANKG 223
            I+N + + +   L+ VA  G
Sbjct: 133 FIQNITQQDLITVLETVAAAG 152

[Close]
BLAST of Spg035466 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-04
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 0 

Query: 142 EDFCAHPQEAVVPLVREFYAGLREESISMAVVRGKMVSFSSVDINRVYRIKTPLNPRGND 201
           + FCAHP++ +VPLVREFYA L +   +   VRG  VS+S   IN V+ +  P++   ++
Sbjct: 64  KQFCAHPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGDPVDEH-SE 123

Query: 202 VIRNPSAKQMKEALKLVANKG 223
            I N +   +   L+ VA  G
Sbjct: 124 FIENITEHDLITVLETVAVAG 143

The following BLAST results are available for this feature:
BLAST of Spg035466 vs. NCBI nr
Match NameE-valueIdentityDescription
PON46472.11.7e-0438.27hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON35554.18.5e-0438.27hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
BLAST of Spg035466 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg035466 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5BCG48.3e-0538.27Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5AGA54.1e-0438.27Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
BLAST of Spg035466 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..260
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035466.1Spg035466.1mRNA