Spg035444 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035444
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold3: 2404726 .. 2405886 (-)
RNA-Seq ExpressionSpg035444
SyntenySpg035444
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGAGTGTGGAAATTCTGCCGAGGGATAACCATTGATAACATCGGGGACAATCTTTTCCTAATTAACCCTCAATCAGAACAGGGAAGAGACAAAATATTGGAAGAAAGCCCGTGGTGTTTCGATGGCAACTTGATACTCCTCAAAGCTCCAACGACATTTGACTTACCAGAAGATATGGTATTTGAAGAAGCCCAATTCTGGGTTCAATTTCACCACCTCCCGTTGGGACTACAGAACGAAACAGTGGCTCAATCACTTGGGAGTCGTTTAGGGATAGTTCAGAGAGTTGACACTAATGAAGCGGATGAATGCTGGGGTCGGTTCCTTCGAGTACGGGTCAAAATGAAGATCAAAGAACCATTATGCAGAGGCCTAACTCTAAACGGCGGACCAACTGGAAAAATTTTGGCAGTGATTAAATATGAGAGACTACCAGATTTTTGTTACTACTGTGGGATGATTGATCACAACGACGGATCGTGCCCCCAACTCAAGACTCAAGCAAAACCAGAAAAGCAATTCGGTTCTTGGATGAGAGCTGCAACTCCCCCGAGACAAAAATATTTTCACACAAATAACAGAGGATACGAGGGAATTAGAGGAGGAAGAAGACGGTTCGGGTACAGACAAAGAAGATGGCAACCATGGCAATCCAACGCAGGGGAGGAAGAAGAAGAAAACATACATGGAGATTCAGAGGACTCCCAAAGCTCCGACGAAAGCGGTGACGAACGGCAGCCGGAAAACAACCGTCGATCGCCTACTACACCCGTTTCCGATGAATTCTCCCCGCAATCAATGCAATCGACGGAGATAACGGGTATTAAATGTCCCCTTTCCTTTGATAACGCTTCTCTTGCGGAGAATTTCCCTTTTAATGCAGGCGGCGTGATTCACGGCAACGCGAATGGAGAAAATAATGGCTCCTCCGGTTTGGAAGGTCTGAAATCTTGCGAATCAAATATGGGCAAAGGGAAGAGAAGAAACGGCTGCTGTGAGGATCTAGGGCAAGGAAACTCAGTGGGGGAAAAAAGAGTTGGTGGGCCCGGGTCCATTAACATGACCCAACCTACTACCCAGATGATGGATGTCACGCTGGTAAATAATTTGGGCATCAAACCCAACTCAAGCTTCACAAAAATTCAGGCCAAATGA

mRNA sequence

ATGAGAGGAGTGTGGAAATTCTGCCGAGGGATAACCATTGATAACATCGGGGACAATCTTTTCCTAATTAACCCTCAATCAGAACAGGGAAGAGACAAAATATTGGAAGAAAGCCCGTGGTGTTTCGATGGCAACTTGATACTCCTCAAAGCTCCAACGACATTTGACTTACCAGAAGATATGGTATTTGAAGAAGCCCAATTCTGGGTTCAATTTCACCACCTCCCGTTGGGACTACAGAACGAAACAGTGGCTCAATCACTTGGGAGTCGTTTAGGGATAGTTCAGAGAGTTGACACTAATGAAGCGGATGAATGCTGGGGTCGGTTCCTTCGAGTACGGGTCAAAATGAAGATCAAAGAACCATTATGCAGAGGCCTAACTCTAAACGGCGGACCAACTGGAAAAATTTTGGCAGTGATTAAATATGAGAGACTACCAGATTTTTGTTACTACTGTGGGATGATTGATCACAACGACGGATCGTGCCCCCAACTCAAGACTCAAGCAAAACCAGAAAAGCAATTCGGTTCTTGGATGAGAGCTGCAACTCCCCCGAGACAAAAATATTTTCACACAAATAACAGAGGATACGAGGGAATTAGAGGAGGAAGAAGACGGTTCGGGTACAGACAAAGAAGATGGCAACCATGGCAATCCAACGCAGGGGAGGAAGAAGAAGAAAACATACATGGAGATTCAGAGGACTCCCAAAGCTCCGACGAAAGCGGTGACGAACGGCAGCCGGAAAACAACCGTCGATCGCCTACTACACCCGTTTCCGATGAATTCTCCCCGCAATCAATGCAATCGACGGAGATAACGGGTATTAAATGTCCCCTTTCCTTTGATAACGCTTCTCTTGCGGAGAATTTCCCTTTTAATGCAGGCGGCGTGATTCACGGCAACGCGAATGGAGAAAATAATGGCTCCTCCGGTTTGGAAGGTCTGAAATCTTGCGAATCAAATATGGGCAAAGGGAAGAGAAGAAACGGCTGCTGTGAGGATCTAGGGCAAGGAAACTCAGTGGGGGAAAAAAGAGTTGGTGGGCCCGGGTCCATTAACATGACCCAACCTACTACCCAGATGATGGATGTCACGCTGGTAAATAATTTGGGCATCAAACCCAACTCAAGCTTCACAAAAATTCAGGCCAAATGA

Coding sequence (CDS)

ATGAGAGGAGTGTGGAAATTCTGCCGAGGGATAACCATTGATAACATCGGGGACAATCTTTTCCTAATTAACCCTCAATCAGAACAGGGAAGAGACAAAATATTGGAAGAAAGCCCGTGGTGTTTCGATGGCAACTTGATACTCCTCAAAGCTCCAACGACATTTGACTTACCAGAAGATATGGTATTTGAAGAAGCCCAATTCTGGGTTCAATTTCACCACCTCCCGTTGGGACTACAGAACGAAACAGTGGCTCAATCACTTGGGAGTCGTTTAGGGATAGTTCAGAGAGTTGACACTAATGAAGCGGATGAATGCTGGGGTCGGTTCCTTCGAGTACGGGTCAAAATGAAGATCAAAGAACCATTATGCAGAGGCCTAACTCTAAACGGCGGACCAACTGGAAAAATTTTGGCAGTGATTAAATATGAGAGACTACCAGATTTTTGTTACTACTGTGGGATGATTGATCACAACGACGGATCGTGCCCCCAACTCAAGACTCAAGCAAAACCAGAAAAGCAATTCGGTTCTTGGATGAGAGCTGCAACTCCCCCGAGACAAAAATATTTTCACACAAATAACAGAGGATACGAGGGAATTAGAGGAGGAAGAAGACGGTTCGGGTACAGACAAAGAAGATGGCAACCATGGCAATCCAACGCAGGGGAGGAAGAAGAAGAAAACATACATGGAGATTCAGAGGACTCCCAAAGCTCCGACGAAAGCGGTGACGAACGGCAGCCGGAAAACAACCGTCGATCGCCTACTACACCCGTTTCCGATGAATTCTCCCCGCAATCAATGCAATCGACGGAGATAACGGGTATTAAATGTCCCCTTTCCTTTGATAACGCTTCTCTTGCGGAGAATTTCCCTTTTAATGCAGGCGGCGTGATTCACGGCAACGCGAATGGAGAAAATAATGGCTCCTCCGGTTTGGAAGGTCTGAAATCTTGCGAATCAAATATGGGCAAAGGGAAGAGAAGAAACGGCTGCTGTGAGGATCTAGGGCAAGGAAACTCAGTGGGGGAAAAAAGAGTTGGTGGGCCCGGGTCCATTAACATGACCCAACCTACTACCCAGATGATGGATGTCACGCTGGTAAATAATTTGGGCATCAAACCCAACTCAAGCTTCACAAAAATTCAGGCCAAATGA

Protein sequence

MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQLKTQAKPEKQFGSWMRAATPPRQKYFHTNNRGYEGIRGGRRRFGYRQRRWQPWQSNAGEEEEENIHGDSEDSQSSDESGDERQPENNRRSPTTPVSDEFSPQSMQSTEITGIKCPLSFDNASLAENFPFNAGGVIHGNANGENNGSSGLEGLKSCESNMGKGKRRNGCCEDLGQGNSVGEKRVGGPGSINMTQPTTQMMDVTLVNNLGIKPNSSFTKIQAK
Homology
BLAST of Spg035444 vs. NCBI nr
Match: OMO61345.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 167.2 bits (422), Expect = 2.9e-37
Identity = 75/209 (35.89%), Postives = 118/209 (56.46%), Query Frame = 0

Query: 1   MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPED 60
           M  VWK   G+ +  IG+NLF+   +S+  ++++ +++PW F+  L++LK+   +D  ED
Sbjct: 59  MHMVWKLAGGLQVREIGENLFIFQFESDLEKERVYQQTPWNFNKALLVLKSYDAYDCVED 118

Query: 61  MVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIK 120
           +  +   FW Q H LPLG  NE++ + +G   G V+ +DT      WG+FLR R ++ + 
Sbjct: 119 IKLDGCSFWKQAHDLPLGFMNESIGRVIGESFGTVEEIDTCGDKIAWGKFLRFRARLNVT 178

Query: 121 EPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQL----KTQAKPEKQF 180
           +PL RG+ L     GKIL   +YE+LPDFCY CG + H +  C +     + + K  K++
Sbjct: 179 KPLRRGMILTAPNGGKILISFRYEKLPDFCYVCGCLTHVENECEKAVVMRRDKGKIIKEY 238

Query: 181 GSWMRAATPPRQKYFHTNNRGYEGIRGGR 206
           G W+RA   PR K    +  G    R GR
Sbjct: 239 GPWLRAEV-PRSKSVKFDGPGISETRTGR 266

BLAST of Spg035444 vs. NCBI nr
Match: XP_023888198.1 (uncharacterized protein LOC112000324 [Quercus suber])

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-35
Identity = 74/199 (37.19%), Postives = 117/199 (58.79%), Query Frame = 0

Query: 1   MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPED 60
           ++ +W+  +   + ++  N+ LI   +E    KIL + PW FD  LI L  P+  +  +D
Sbjct: 53  LKTMWRSIQNFQVHDLTSNIVLILFSNEVDAKKILSQGPWSFDKYLIGLYKPSESESVDD 112

Query: 61  MVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIK 120
             F+ A FWVQ H+LPL   N   A+ +GS LG V++VD +   EC GR +R+RV + I+
Sbjct: 113 AKFDTASFWVQIHNLPLSRMNRANAEIIGSSLGKVEQVDASPTGECRGRCVRIRVALNIE 172

Query: 121 EPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSC----PQLKTQAKPEKQF 180
           +PLCRG  ++ G TG +    +YER+P FCY+CG+++H++  C       +T  K  +Q+
Sbjct: 173 QPLCRGRFVDMGATGPLWVSFQYERMPVFCYWCGLMNHDEKDCRLWTDSGETLEKESQQY 232

Query: 181 GSWMRA--ATPPRQKYFHT 194
           G W+RA  A P + +  HT
Sbjct: 233 GPWLRATMANPQQTQVVHT 251

BLAST of Spg035444 vs. NCBI nr
Match: XP_030930480.1 (uncharacterized protein LOC115956164 [Quercus lobata])

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-35
Identity = 84/227 (37.00%), Postives = 117/227 (51.54%), Query Frame = 0

Query: 1   MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPED 60
           ++ VWK      + ++G+N  +   Q +   D++L  SPW FD  L++L      +  +D
Sbjct: 53  LKSVWKTEATFEVSDLGENKVMFLFQKKDDMDRVLFLSPWLFDKYLLVLHKLAYGEAVQD 112

Query: 61  MVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIK 120
           + F+   FW+Q H LP   Q +TV  S+G+ LG V++VD N +  C G FLR+RV++ I 
Sbjct: 113 IKFDRTPFWIQIHRLPTMCQTKTVGMSIGATLGEVEKVDANGSGFCLGSFLRIRVQLDIT 172

Query: 121 EPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQ----LKTQAKPEKQF 180
           +PLCRG  +  G  G      KYERLP FCY CGMIDH++  C Q     +T    EKQF
Sbjct: 173 KPLCRGRKVRLGEHGMKWVEFKYERLPIFCYLCGMIDHDERDCLQGFRSKETPRPEEKQF 232

Query: 181 GSWMRAATPPRQKYFHTNNRGYEGIRGGRRRFGYRQRRWQPWQSNAG 224
           G W+RA     QK        Y   R G        RRW    +  G
Sbjct: 233 GPWLRANPDKHQKTVLITAGKYGESRNGEVEPETMARRWNAEPTKEG 279

BLAST of Spg035444 vs. NCBI nr
Match: XP_023915780.1 (uncharacterized protein At4g02000-like [Quercus suber])

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-35
Identity = 70/186 (37.63%), Postives = 111/186 (59.68%), Query Frame = 0

Query: 1   MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPED 60
           +R +W+  R   + ++G N  LI  + E    K++ + PW FD  L+ L  PT  +L +D
Sbjct: 53  LRSMWRSVRSFEVRDLGSNTVLIIFEDETDPQKLMVQGPWTFDKYLVGLYRPTGEELVDD 112

Query: 61  MVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIK 120
             F++  FWVQ H+LPL   N+T A+++G  LGIV+ VD +   EC GR+LRVR+++ I 
Sbjct: 113 ATFDKTTFWVQMHNLPLRRMNKTTAEAIGKTLGIVEHVDASATGECRGRYLRVRIQLDIT 172

Query: 121 EPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSC----PQLKTQAKPEKQF 180
           +PLCRG  +N G         +YE+L  FCY+CG+++H++  C       +T    E+Q+
Sbjct: 173 QPLCRGRMVNIGKAELQWVAFQYEKLSIFCYWCGLLNHDEKDCTLWFDSGETFCTEEQQY 232

Query: 181 GSWMRA 183
           G+W+ A
Sbjct: 233 GAWLCA 238

BLAST of Spg035444 vs. NCBI nr
Match: XP_023926510.1 (uncharacterized protein LOC112037926 [Quercus suber])

HSP 1 Score: 160.6 bits (405), Expect = 2.7e-35
Identity = 76/200 (38.00%), Postives = 118/200 (59.00%), Query Frame = 0

Query: 1   MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPED 60
           ++ +W+  +   + ++  N  LI   +E    KIL + PW FD  LI L  P+  +  +D
Sbjct: 53  LKTMWRSIQNFEVRDLTSNTVLILFSNEVDAKKILSQGPWSFDKYLIGLYKPSESESVDD 112

Query: 61  MVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIK 120
             F+ A FWVQ H+LPL   N   A+ +GS LG V++VD +   EC GR +R+RV + I+
Sbjct: 113 AKFDTASFWVQIHNLPLSRMNRANAEIIGSSLGKVEQVDASPTGECRGRCVRIRVALNIE 172

Query: 121 EPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQL-----KTQAKPEKQ 180
           +PLCRG  ++ G TG +    +YER+P FCY+CG+++H++  C QL     +T  K  +Q
Sbjct: 173 QPLCRGRFVDMGATGPLWVSFQYERMPVFCYWCGLMNHDEKDC-QLWTDSGETLEKESQQ 232

Query: 181 FGSWMRA--ATPPRQKYFHT 194
           +G W+RA  A P + +  HT
Sbjct: 233 YGPWLRATMANPQQTQVVHT 251

BLAST of Spg035444 vs. ExPASy TrEMBL
Match: A0A1R3GTB5 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-37
Identity = 75/209 (35.89%), Postives = 118/209 (56.46%), Query Frame = 0

Query: 1   MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPED 60
           M  VWK   G+ +  IG+NLF+   +S+  ++++ +++PW F+  L++LK+   +D  ED
Sbjct: 59  MHMVWKLAGGLQVREIGENLFIFQFESDLEKERVYQQTPWNFNKALLVLKSYDAYDCVED 118

Query: 61  MVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIK 120
           +  +   FW Q H LPLG  NE++ + +G   G V+ +DT      WG+FLR R ++ + 
Sbjct: 119 IKLDGCSFWKQAHDLPLGFMNESIGRVIGESFGTVEEIDTCGDKIAWGKFLRFRARLNVT 178

Query: 121 EPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQL----KTQAKPEKQF 180
           +PL RG+ L     GKIL   +YE+LPDFCY CG + H +  C +     + + K  K++
Sbjct: 179 KPLRRGMILTAPNGGKILISFRYEKLPDFCYVCGCLTHVENECEKAVVMRRDKGKIIKEY 238

Query: 181 GSWMRAATPPRQKYFHTNNRGYEGIRGGR 206
           G W+RA   PR K    +  G    R GR
Sbjct: 239 GPWLRAEV-PRSKSVKFDGPGISETRTGR 266

BLAST of Spg035444 vs. ExPASy TrEMBL
Match: A0A1R3K847 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10561 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 8.4e-35
Identity = 71/208 (34.13%), Postives = 114/208 (54.81%), Query Frame = 0

Query: 4   VWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVF 63
           VWK   G+ +  IG+ L++   +SE  ++++ ++ PW F+  L++LK    F   E++  
Sbjct: 62  VWKLSGGLQVREIGEKLYIFQFESEVEKERVYQQGPWNFNKALLVLKNYDAFISVEEIKL 121

Query: 64  EEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIKEPL 123
           E   FW+Q H LPLG   E+V +++G   G V  +DT      WG+FLR+R  + + +PL
Sbjct: 122 EWCAFWIQVHDLPLGFMTESVGKAIGDSFGEVIEIDTCGDKVAWGKFLRIRACLNVNKPL 181

Query: 124 CRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQL----KTQAKPEKQFGSW 183
            RG+ L     GKIL   +YE+LPDFCY CG ++H +  C +     +   K +K++G W
Sbjct: 182 RRGMILTAPNGGKILVSFRYEKLPDFCYVCGCLNHTENECEKAVIMRRDSGKVKKEYGPW 241

Query: 184 MRAATPPRQKYFHTNNRGYEGIRGGRRR 208
           +RA   PR      +  G    R G+ +
Sbjct: 242 LRAEV-PRSNTLKFDGPGISETRTGKEK 268

BLAST of Spg035444 vs. ExPASy TrEMBL
Match: A0A2N9E949 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3389 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.1e-33
Identity = 78/205 (38.05%), Postives = 113/205 (55.12%), Query Frame = 0

Query: 1   MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPED 60
           M   W+  +G  + +IGDNLF+        RD +L   PW FD NL+LLK        + 
Sbjct: 1   MMSRWRPSQGAQMKDIGDNLFIAIFNDAMDRDLVLMNGPWAFDKNLVLLKLFDGDQKVQG 60

Query: 61  MVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIK 120
           M   EA FW+Q H LP    NE  A S+G+ LG+++ +D  E    WG F+RV+V++ + 
Sbjct: 61  MQLTEASFWIQIHELPFKGMNEETATSVGNALGVLEEIDIPEDGITWGEFMRVQVRIDVS 120

Query: 121 EPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQLKTQAKPEK-----Q 180
            PL R   +  G    I   +KYE+LP FCY CG++ H++  C +L TQ +  K     +
Sbjct: 121 MPLLRRQRVKLGKEESIWVTLKYEKLPTFCYNCGILGHSEREC-RLVTQHEKSKDGNHYE 180

Query: 181 FGSWMRAATPPRQKYFHTNNRGYEG 201
           +GSW+R ATP R+K   T +  +EG
Sbjct: 181 YGSWLR-ATPGRRK---TGSVTFEG 200

BLAST of Spg035444 vs. ExPASy TrEMBL
Match: A0A2N9F689 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10176 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.7e-33
Identity = 71/190 (37.37%), Postives = 107/190 (56.32%), Query Frame = 0

Query: 1   MRGVWK--FCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLP 60
           M  +WK    RG+   +IGDNLFL     +  ++ +L  SPWCFD  L++LK        
Sbjct: 59  MTNLWKPMTTRGVKARDIGDNLFLFEFHDQYDKETVLIASPWCFDRQLLVLKDFNGDSQL 118

Query: 61  EDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMK 120
            ++  +EA FWVQ + LP+      V +++G  +G V+ V+       WGRFLRVRV++ 
Sbjct: 119 ANISLDEALFWVQIYDLPIMAMTREVGKAIGETMGTVEEVEAEADGTAWGRFLRVRVRLD 178

Query: 121 IKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCP-QLKTQAK-----P 180
           +++PL R   +  G    IL   +YERLP+FC+YCG +DH +  C  +L+ + K      
Sbjct: 179 VRKPLTRVKRVKLGSDPSILVYFRYERLPNFCFYCGKLDHGERECKMRLRNKGKMAAESS 238

Query: 181 EKQFGSWMRA 183
           E Q+G W+RA
Sbjct: 239 ENQYGVWLRA 248

BLAST of Spg035444 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.0e-33
Identity = 72/180 (40.00%), Postives = 101/180 (56.11%), Query Frame = 0

Query: 5   WKF-CRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVF 64
           WK  C+  ++D IG N+FL N      R++IL   PW FD  LI++  P +   P DM F
Sbjct: 65  WKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPLDMDF 124

Query: 65  EEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIKEPL 124
                WV F  L L   N+T+A  LG+ +G+ + V++N  + CWG  LRVRV+  + +PL
Sbjct: 125 RNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPL 184

Query: 125 CRGLTLN-GGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQLKTQAKPEK-QFGSWMR 182
            RG+ LN  GP G     I+YERLPDF Y+CG +DH    C      +  +  Q+G W+R
Sbjct: 185 HRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDCCVDSVSKNLQYGPWLR 244

BLAST of Spg035444 vs. TAIR 10
Match: AT3G31430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18636.1); Has 295 Blast hits to 291 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-12
Identity = 42/136 (30.88%), Postives = 58/136 (42.65%), Query Frame = 0

Query: 28  EQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQS 87
           E+  + +L   PW F+  +ILL+       P+  +F    FWVQ   +P    N  V + 
Sbjct: 180 EESLETVLRRGPWAFNDWMILLQRWE----PQIPLFPFIPFWVQIRGIPFQFLNRGVVEH 239

Query: 88  LGSRLGIVQRVDTNEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLP 147
           +G  LG V   D N        F RV +   I  PL              L   +YERL 
Sbjct: 240 IGRALGQVLDTDFNVEVVARMDFARVLLHWDITHPLRFQRHFQFTAGVNTLLRFRYERLR 299

Query: 148 DFCYYCGMIDHNDGSC 164
            FC  CGM+ H+ G+C
Sbjct: 300 GFCEVCGMLTHDFGAC 311

BLAST of Spg035444 vs. TAIR 10
Match: AT3G42140.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 62.4 bits (150), Expect = 9.3e-10
Identity = 37/141 (26.24%), Postives = 60/141 (42.55%), Query Frame = 0

Query: 26  QSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVA 85
           QSE+    IL   PW F+  + +++  T   L  D  F+   FW+Q   +PL      + 
Sbjct: 67  QSEESMFSILRRGPWSFNDWMCVIQRWT--KLHSDAEFKRIPFWIQIRGIPLRFLTARII 126

Query: 86  QSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIK--Y 145
            S+G R+G+   ++TN                                 G+ ++V+K  Y
Sbjct: 127 TSIGERMGLF--LETN--------------------------------LGRDVSVLKFQY 171

Query: 146 ERLPDFCYYCGMIDHNDGSCP 165
           E+L +FC  CGM+ H+   CP
Sbjct: 187 EKLKNFCTTCGMLSHDASECP 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OMO61345.12.9e-3735.89reverse transcriptase [Corchorus capsularis][more]
XP_023888198.11.2e-3537.19uncharacterized protein LOC112000324 [Quercus suber][more]
XP_030930480.11.6e-3537.00uncharacterized protein LOC115956164 [Quercus lobata][more]
XP_023915780.11.6e-3537.63uncharacterized protein At4g02000-like [Quercus suber][more]
XP_023926510.12.7e-3538.00uncharacterized protein LOC112037926 [Quercus suber][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1R3GTB51.4e-3735.89Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV... [more]
A0A1R3K8478.4e-3534.13Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10561 PE=4 SV=1[more]
A0A2N9E9492.1e-3338.05CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3389... [more]
A0A2N9F6892.7e-3337.37Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10176 PE=4 SV=1[more]
A0A6J1BSZ16.0e-3340.00uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
Match NameE-valueIdentityDescription
AT3G31430.12.0e-1230.88unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G42140.19.3e-1026.24zinc ion binding;nucleic acid binding [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 1..115
e-value: 3.8E-18
score: 65.4
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 141..164
e-value: 2.0E-8
score: 33.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 253..273
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..273
NoneNo IPR availablePANTHERPTHR31286:SF84SUBFAMILY NOT NAMEDcoord: 33..224
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 33..224

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035444.1Spg035444.1mRNA