Spg035426 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035426
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Locationscaffold3: 2276706 .. 2280427 (-)
RNA-Seq ExpressionSpg035426
SyntenySpg035426
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCTACTGCTCATTGTTGCTTCAATGAACTGACATTGCAAGAAGATAAAACTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAATTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAAACAAGAACTATGAAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGTGGTTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCTGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAATACTACAGTGCAAGATGATCAGCCACAGTGTTCTACTTCGATCGCTTCACTATCCATCCAACAGCTCCAGGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCGAAATTTCAGCAGTTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAACAATTCGTTCGAAAACTTAAAGGAAATGTGTTTGACTGGTACACTGATCTAGAACCTGAGTCGATAGACAGTTTGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACCAGACGAACCGTTAGCATGTTCGAGCTCACCAACACAAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGCAAAGATCGCCTCACCGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCATTGGGAACTCCTCTACATCCTTAAAGGTATAAAGCCTCGCAGCTTTGAAGAACTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAACATGAGGAAAGAAGGAAGGAACGATGAAGAGACTGTAGAAGAATCTATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACAAATGGAACGCATCACTTAACTTTAAAGGAAAGACAGAAGAAAATCTATCTTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGACGGAGAAAGTCAATGAGCCCAAGTACTGCAAGTATCATCGAGTTATTGGTATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAGACTAGCTAAAGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCAGACTACAGTCAAAGGAAATGGTAGACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAAAAGTAAAAAGTTTTCTCAACCTCAACAACCGGTGATTGCAAAGGACCTCTTCTCCAAAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTGCATCGACGTAGAACAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGTGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTTAACATCTGTCTTTGATCGCCTCGAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCCTGACCAATCCTACAAGTCAAGGATTTGATCAAGACCATGATGAAGATAAGAGCTTTTAAAATGTAAGAGCTCCTTATCGCAAGAGCATAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTAAAAACAAAAAAAAGGGTGCATGACAATACAAATTGAAGAAATTCTTTAGTACTGGGGGCAATACAACAAATTGAAGTTGTACACCGTTATAAATATGAAGCTACGAGTTGGACGAATAAAAGAAGATTTCATTCCTCCAAATTCAACGTCTCGCTAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTTGTTCCCGCTTCTTCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCGTTGCAGTTCATTCTCTCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCTTTCTCTCCAAGTTTGAAGGTTGACGCACTTCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCATTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGTGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAGAGTTTCTCACGCGCTGCGTTGCAGTTCCTTCTCCCGAAGTTCGAAGGTTCACGGGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTCTTCAAGTTTGAAGGTTCACACGTTGCGCTGCTTCTTCGCCATGTTCGAAGGTTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGTTCTCACGCTGCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTGTTGTGCCACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGTGCTGTTGTGCTGCTTCCTTCTCCAAGTTCATAGGTTCTCACGTTGCGCTACTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCACCAAGTTCGAAGATTCACACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTTACGCTACGCTGCTTCCTTCACCAAATTCGAAGGTTCTTCGCTGTACTGCTACGCTGCCAGTCCAGTCTCTCTCCAAGTTCGAAGGTTCTGACGCTACACTGCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTGCTTTGA

mRNA sequence

ATGAGTTCTACTGCTCATTGTTGCTTCAATGAACTGACATTGCAAGAAGATAAAACTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAATTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAAACAAGAACTATGAAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGTGGTTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCTGAATCAAGTCAAACCCAAGACCTCTTCTCCAAAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTGCATCGACGTAGAACAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGTGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTTAACATCTGTCTTTGATCGCCTCGAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCGTTGCAGTTCATTCTCTCAAGTTCGAAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCATTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGTGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAGAGTTTCTCACGCGCTGCGTTGCAGTTCCTTCTCCCGAAGTTCGAAGGTTCACGGGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTCTTCAAGTTTGAAGGTTCACACGTTGCGCTGCTTCTTCGCCATGTTCGAAGGTTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGTTCTCACGCTGCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTACTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCACCAAGTTCGAAGATTCACACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTTACGCTACGCTGCTTCCTTCACCAAATTCGAAGGTTCTTCGCTGTACTGCTACGCTGCCAGTCCAGTCTCTCTCCAAGTTCGAAGGTTCTGACGCTACACTGCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTGCTTTGA

Coding sequence (CDS)

ATGAGTTCTACTGCTCATTGTTGCTTCAATGAACTGACATTGCAAGAAGATAAAACTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAATTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAAACAAGAACTATGAAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGTGGTTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCTGAATCAAGTCAAACCCAAGACCTCTTCTCCAAAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTGCATCGACGTAGAACAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGTGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTTAACATCTGTCTTTGATCGCCTCGAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCGTTGCAGTTCATTCTCTCAAGTTCGAAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCATTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGTGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAGAGTTTCTCACGCGCTGCGTTGCAGTTCCTTCTCCCGAAGTTCGAAGGTTCACGGGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTCTTCAAGTTTGAAGGTTCACACGTTGCGCTGCTTCTTCGCCATGTTCGAAGGTTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGTTCTCACGCTGCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTACTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCACCAAGTTCGAAGATTCACACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTTACGCTACGCTGCTTCCTTCACCAAATTCGAAGGTTCTTCGCTGTACTGCTACGCTGCCAGTCCAGTCTCTCTCCAAGTTCGAAGGTTCTGACGCTACACTGCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTGCTTTGA

Protein sequence

MSSTAHCCFNELTLQEDKTSIVAGQETTLQGAYTNDKFIVKYNPLFEPDSDIVTVMMTETRTMKERMAEMQEHINTLMKVVEEKDSQIAQLKSQIENQHIAESSQTQDLFSKTFHKKEEGNFVTSYCIDVEQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFEGSHALRCSSFFSISKVLTRFVAVHSLKFEVPSPQVRRFSRASLQFLLPKFEGPYTVRYCVVPSPSSKVLRCTLLHCSFSKFEGSQLYDCYVVPPPSAKDLMLCVAALFPLLSSSEFLTRCVAVPSPEVRRFTGFAAVPSLQVRRFSCASLQSLLFKFEGSHVALLLRHVRRFTRCAVPSPNSKVLTLRCFAVPSPSSKVLTLRYFLHQVRRFSRCAVSLFLLQVRRFSCASLQFLLFKFEGSHVALLLHQVRRFTRCAASFTKFEGSDVALLPSLSLKVPTLRCCAASFSKFEGSYATLLPSPNSKVLRCTATLPVQSLSKFEGSDATLLPSPRSKVLVLRCFAYLSPNSKVLL
Homology
[Close]
BLAST of Spg035426 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 4.0e-33
Identity = 82/125 (65.60%), Postives = 100/125 (80.00%), Query Frame = 0 

Query: 131 EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVS 190
           E+VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  R SAF+RL +S
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 191 TSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLIN 250
           TSKK +  TS FDRL++TNDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 239

Query: 251 TEGSL 256
           TEGSL
Sbjct: 240 TEGSL 244

[Close]
BLAST of Spg035426 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 2.6e-32
Identity = 80/125 (64.00%), Postives = 100/125 (80.00%), Query Frame = 0 

Query: 131 EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVS 190
           E+VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +S
Sbjct: 537 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSIS 596

Query: 191 TSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLIN 250
           TSKK +  TS FDRL++TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK SV IN
Sbjct: 597 TSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDIN 656

Query: 251 TEGSL 256
           TEGSL
Sbjct: 657 TEGSL 661

[Close]
BLAST of Spg035426 vs. NCBI nr
Match: KAA0055462.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 2.6e-32
Identity = 80/125 (64.00%), Postives = 100/125 (80.00%), Query Frame = 0 

Query: 131 EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVS 190
           E+VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +S
Sbjct: 537 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSIS 596

Query: 191 TSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLIN 250
           TSKK +  TS FDRL++TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK SV IN
Sbjct: 597 TSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDIN 656

Query: 251 TEGSL 256
           TEGSL
Sbjct: 657 TEGSL 661

[Close]
BLAST of Spg035426 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 3.4e-32
Identity = 80/125 (64.00%), Postives = 98/125 (78.40%), Query Frame = 0 

Query: 131 EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVS 190
           E+VDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EEE+QC  ST  R SAF+RL +S
Sbjct: 61  EEVDNSNEIKQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 120

Query: 191 TSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLIN 250
           TSKK +  TS FDRL++TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV IN
Sbjct: 121 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDIN 180

Query: 251 TEGSL 256
           TEGSL
Sbjct: 181 TEGSL 185

[Close]
BLAST of Spg035426 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 4.4e-32
Identity = 80/125 (64.00%), Postives = 99/125 (79.20%), Query Frame = 0 

Query: 131 EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVS 190
           E+VDNS + +QRTSVFDRIKP TTR  VFQR+SMA  EEE+QC +ST  R SAF+RL +S
Sbjct: 61  EEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMSTYARTSAFKRLSIS 120

Query: 191 TSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLIN 250
           TSKK +  TS FDRL++TNDQ +R+M + + K F E N+D+K+HS +PSRMKRK SV IN
Sbjct: 121 TSKKHRPSTSAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 180

Query: 251 TEGSL 256
           TEGSL
Sbjct: 181 TEGSL 185

[Close]
BLAST of Spg035426 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.9e-33
Identity = 82/125 (65.60%), Postives = 100/125 (80.00%), Query Frame = 0 

Query: 131 EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVS 190
           E+VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  R SAF+RL +S
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 191 TSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLIN 250
           TSKK +  TS FDRL++TNDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 239

Query: 251 TEGSL 256
           TEGSL
Sbjct: 240 TEGSL 244

[Close]
BLAST of Spg035426 vs. ExPASy TrEMBL
Match: A0A5A7UI09 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00340 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-32
Identity = 80/125 (64.00%), Postives = 100/125 (80.00%), Query Frame = 0 

Query: 131 EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVS 190
           E+VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +S
Sbjct: 537 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSIS 596

Query: 191 TSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLIN 250
           TSKK +  TS FDRL++TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK SV IN
Sbjct: 597 TSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDIN 656

Query: 251 TEGSL 256
           TEGSL
Sbjct: 657 TEGSL 661

[Close]
BLAST of Spg035426 vs. ExPASy TrEMBL
Match: A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-32
Identity = 80/125 (64.00%), Postives = 100/125 (80.00%), Query Frame = 0 

Query: 131 EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVS 190
           E+VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +S
Sbjct: 537 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSIS 596

Query: 191 TSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLIN 250
           TSKK +  TS FDRL++TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK SV IN
Sbjct: 597 TSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDIN 656

Query: 251 TEGSL 256
           TEGSL
Sbjct: 657 TEGSL 661

[Close]
BLAST of Spg035426 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.6e-32
Identity = 80/125 (64.00%), Postives = 98/125 (78.40%), Query Frame = 0 

Query: 131 EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVS 190
           E+VDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EEE+QC  ST  R SAF+RL +S
Sbjct: 61  EEVDNSNEIKQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 120

Query: 191 TSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLIN 250
           TSKK +  TS FDRL++TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV IN
Sbjct: 121 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDIN 180

Query: 251 TEGSL 256
           TEGSL
Sbjct: 181 TEGSL 185

[Close]
BLAST of Spg035426 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-32
Identity = 80/125 (64.00%), Postives = 99/125 (79.20%), Query Frame = 0 

Query: 131 EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVS 190
           E+VDNS + +QRTSVFDRIKP TTR  VFQR+SMA  EEE+QC +ST  R SAF+RL +S
Sbjct: 61  EEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMSTYARTSAFKRLSIS 120

Query: 191 TSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLIN 250
           TSKK +  TS FDRL++TNDQ +R+M + + K F E N+D+K+HS +PSRMKRK SV IN
Sbjct: 121 TSKKHRPSTSAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 180

Query: 251 TEGSL 256
           TEGSL
Sbjct: 181 TEGSL 185

The following BLAST results are available for this feature:
BLAST of Spg035426 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0044978.14.0e-3365.60retrotransposon gag protein [Cucumis melo var. makuwa][more]
TYK08944.12.6e-3264.00retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0055462.12.6e-3264.00retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0050734.13.4e-3264.00gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol... [more]
KAA0036008.14.4e-3264.00Retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of Spg035426 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg035426 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TQ061.9e-3365.60Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7UI091.2e-3264.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3CCI81.2e-3264.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3BBF91.6e-3264.00Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7SZJ72.1e-3264.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
BLAST of Spg035426 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 74..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035426.1Spg035426.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008233 peptidase activity