Spg035346 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035346
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionFom-2 protein
Locationscaffold7: 24457799 .. 24459110 (+)
RNA-Seq ExpressionSpg035346
SyntenySpg035346
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTCACAGCGTTGCGACGCTGTCGACTTGTTCAGCAAGAAATGGCCCGTCCATGCTCCTATAAATAGCCCCCCTTCCTTTGGTTCAAATCATTCCATTTTGGGGAGAGTTCTCCCCTAGCTCAAAAGAGAGAAAAAGAAAGTAGAGTTGTTAAGAAAAAGGTGGAATTAAGCGAGATTCCAAGGTTCGGGATTTGAGATGATCGTAACGGGAGCTTGGGATCAACTTATCGGTTATTTCTTCCTTACTCCTTTGTAATTCTTTATTGTAGTTTGAGTTAGGCCTATGGATCAAGATCACTTGGGCAAAATTATTTCCATTTGTGAGTAGATATTGGGACCTAGGGTTGTTATTCTAGCTAATTGGATATTGTAGCTTAATTCATTGGATTTTGTAACGAAGCTCTTCATATTTCATCTATGCAATTCATTCTTAATTCTTTTAATCTCTTGATCACGGATTAATTGTTGTGTTGGTCGAAATTAATACTCGACAGAGAGAACTTAGATTAGATCCAAATTGCATGGCTAATGATTGCTTGGAACACGAGAGTGAAAAAGAATTGTTAGAAATTGATAATGAAGTTGCTTAATGCCATACTATGATTAACTAAAGAAATGGACACATGAATTAGTTATGTTAGTATGAGATGTGAAGGAGCTTGAAAAGAAATCCGCTTGAAATTACTTCTAGATTTATGGAATTGAAGATTAGTAAGTACATTCATCCAATTAATTGAGCTACAAATCCAAGAAAGCTAGATAACACCCAAGGTCAAGTCCCTTTAATAGGATATTTACATTTTAATTGCATGATTTCTTTAGTTTCTTGTTAATTCTTTATTTCTTTAAAGTTGAGCTTCTAAATAAAATTAAGCATGTTGGTTCTCGGTAATTAATGGACATAAATCAATTTCCCTGAGGATTCGATACTCGGAATACTTTCCGTTTTAATATTATCTGGGTAACCGTACGCTTGCGGAAAAGTGCAACAAACTGCGACTGAGCTTCCCCAACAACTCGAGCACCTCACTGCCTTGCAAGATCTATCCATTCAAGATTTTGGTCGCATTGAAGCTTTGCGAGAATGGTTGAGAAACCTTACATCATTGCGAACGCTGAGTCTTTCTTTTTGCAAAAATTTGAAACTGTTGCCTTCCAAGGGAGCCATGCTACACCTCACCAGATTAAGTCGATTACATGTTTTTCAGTGTCCACAGCTACGGCTTGGTCAAAGCCACACGGAGCGAGCCAAACTTTTCCATCTTCCAACAATTTGTATTCAAGATGATGATGAAGAGTTGTTTTGA

mRNA sequence

ATGACGTCACAGCGTTGCGACGCTGTCGACTTGTTCAGCAAGAAATGGCCCGTCCATGCTCCTATAAATAGCCCCCCTTCCTTTGTGCAACAAACTGCGACTGAGCTTCCCCAACAACTCGAGCACCTCACTGCCTTGCAAGATCTATCCATTCAAGATTTTGGTCGCATTGAAGCTTTGCGAGAATGGTTGAGAAACCTTACATCATTGCGAACGCTGAGTCTTTCTTTTTGCAAAAATTTGAAACTGTTGCCTTCCAAGGGAGCCATGCTACACCTCACCAGATTAAGTCGATTACATGTTTTTCAGTGTCCACAGCTACGGCTTGGTCAAAGCCACACGGAGCGAGCCAAACTTTTCCATCTTCCAACAATTTGTATTCAAGATGATGATGAAGAGTTGTTTTGA

Coding sequence (CDS)

ATGACGTCACAGCGTTGCGACGCTGTCGACTTGTTCAGCAAGAAATGGCCCGTCCATGCTCCTATAAATAGCCCCCCTTCCTTTGTGCAACAAACTGCGACTGAGCTTCCCCAACAACTCGAGCACCTCACTGCCTTGCAAGATCTATCCATTCAAGATTTTGGTCGCATTGAAGCTTTGCGAGAATGGTTGAGAAACCTTACATCATTGCGAACGCTGAGTCTTTCTTTTTGCAAAAATTTGAAACTGTTGCCTTCCAAGGGAGCCATGCTACACCTCACCAGATTAAGTCGATTACATGTTTTTCAGTGTCCACAGCTACGGCTTGGTCAAAGCCACACGGAGCGAGCCAAACTTTTCCATCTTCCAACAATTTGTATTCAAGATGATGATGAAGAGTTGTTTTGA

Protein sequence

MTSQRCDAVDLFSKKWPVHAPINSPPSFVQQTATELPQQLEHLTALQDLSIQDFGRIEALREWLRNLTSLRTLSLSFCKNLKLLPSKGAMLHLTRLSRLHVFQCPQLRLGQSHTERAKLFHLPTICIQDDDEELF
Homology
BLAST of Spg035346 vs. NCBI nr
Match: XP_038904500.1 (disease resistance protein RGA2-like, partial [Benincasa hispida])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 60/95 (63.16%), Postives = 70/95 (73.68%), Query Frame = 0

Query: 33  ATELPQQLEHLTALQDLSIQDFGRIEALREWLRNLTSLRTLSLSFCKNLKLLPSKGAMLH 92
           AT+LPQQL+HLT L+ L I DF  IEAL EWL NLTSLRTLS   CKNLK LPS+ AML 
Sbjct: 377 ATQLPQQLQHLTNLEVLMIADFDSIEALPEWLGNLTSLRTLSFLDCKNLKELPSREAMLC 436

Query: 93  LTRLSRLHVFQCPQLRLGQSHTERAKLFHLPTICI 128
           LT+L  L VF+CP+L +G+   E  KL HLPT C+
Sbjct: 437 LTKLDDLLVFRCPKLLVGEGDQEGPKLSHLPTKCV 471

BLAST of Spg035346 vs. NCBI nr
Match: XP_038901555.1 (putative disease resistance protein RGA3 [Benincasa hispida])

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-21
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 0

Query: 32   TATELPQQLEHLTALQDLSIQDFGRIEALREWLRNLTSLRTLSLSFCKNLKLLPSKGAML 91
            + T+LPQQL+ LTALQ LS+++FG IEAL EWL N  SL+ L L  C+NLK  PSK AML
Sbjct: 959  SVTQLPQQLQFLTALQKLSLENFGGIEALPEWLGNFVSLQRLDLLCCQNLKQFPSKEAML 1018

Query: 92   HLTRLSRLHVFQCPQLRLGQSHTERAKLFHLPTI 126
             LT+LS L  ++CPQL+LG+  TER KL HLP I
Sbjct: 1019 RLTKLSYLCAYECPQLQLGEGDTERVKLSHLPNI 1052

BLAST of Spg035346 vs. NCBI nr
Match: AAT77098.1 (Fom-2 protein, partial [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 3.8e-21
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 0

Query: 32  TATELPQQLEHLTALQDLSIQDFGRIEALREWLRNLTSLRTLSLSFCKNLKLLPSKGAML 91
           + T++PQQL+HLTAL+ LSI++FG IEAL EWL N   L+TLSL  CKNLK LPS  AML
Sbjct: 450 SVTQIPQQLQHLTALEFLSIENFGGIEALPEWLGNFVCLQTLSLFNCKNLKKLPSTEAML 509

Query: 92  HLTRLSRLHVFQCPQLRLGQSHTERAKLFHLPTICIQDD 131
            LT+L+RL   +CPQL LG    E AKL HLP I I  D
Sbjct: 510 CLTKLNRLDACRCPQLLLGNGDMEGAKLSHLPQISIYRD 548

BLAST of Spg035346 vs. NCBI nr
Match: XP_004149742.2 (disease resistance protein RGA2 [Cucumis sativus] >KGN58559.1 hypothetical protein Csa_001108 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 6.5e-21
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 0

Query: 32   TATELPQQLEHLTALQDLSIQDFGRIEALREWLRNLTSLRTLSLSFCKNLKLLPSKGAML 91
            + T++P+QL+HLTALQ LSIQ F RIEAL EWL N   L+TL+L  CK LK LPS  AML
Sbjct: 986  SVTQIPEQLQHLTALQFLSIQHFRRIEALPEWLGNYVCLQTLNLWNCKKLKKLPSTEAML 1045

Query: 92   HLTRLSRLHVFQCPQLRLGQSHTERAKLFHLPTICI 128
             LT+L++LHV  CPQL L +   ERAKL HLP I I
Sbjct: 1046 RLTKLNKLHVCDCPQLLLEEGDMERAKLSHLPEIQI 1081

BLAST of Spg035346 vs. NCBI nr
Match: XP_038877313.1 (putative disease resistance protein RGA3 [Benincasa hispida])

HSP 1 Score: 110.9 bits (276), Expect = 8.5e-21
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 0

Query: 31   QTATELPQQLEHLTALQDLSIQDFGRIEALREWLRNLTSLRTLSLSFCKNLKLLPSKGAM 90
            + ATELP+QL++LTAL+ L+I++F  +EAL +WL NLTSL TL L  CKNLK  PSK  M
Sbjct: 1061 RNATELPRQLKYLTALKALTIKNFNSLEALPDWLGNLTSLETLGLFDCKNLKCFPSKEVM 1120

Query: 91   LHLTRLSRLHVFQCPQLRLGQSHTERAKLFHLPTICIQDDDEELF 136
            L L +L+ LHV  CP L LGQ   E+AKL HLP  C+    + LF
Sbjct: 1121 LCLKKLNHLHVRGCPMLLLGQDDPEKAKLSHLPNNCVDVRFQSLF 1165

BLAST of Spg035346 vs. ExPASy Swiss-Prot
Match: Q7XA39 (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum OX=147425 GN=RGA4 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-04
Identity = 34/97 (35.05%), Postives = 50/97 (51.55%), Query Frame = 0

Query: 35  ELPQQLEHLTALQDLSIQDFGRIEALRE-WLRNLTSLRTLSLSFCKNLKLLPSKGAMLHL 94
           +LP  L  L AL+ L I+    +E+  E  L  LTSL  L + +CK LK LP    + HL
Sbjct: 893 DLPTSLTSLNALKRLQIESCDSLESFPEQGLEGLTSLTQLFVKYCKMLKCLPE--GLQHL 952

Query: 95  TRLSRLHVFQCPQLRL---GQSHTERAKLFHLPTICI 128
           T L+ L V  CP++      +   +  K+ H+P + I
Sbjct: 953 TALTNLGVSGCPEVEKRCDKEIGEDWHKIAHIPNLDI 987

BLAST of Spg035346 vs. ExPASy Swiss-Prot
Match: Q7XA42 (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 0

Query: 35  ELPQQLEHLTALQDLSIQDFGRIEAL-REWLRNLTSLRTLSLSFCKNLKLLPSKGAMLHL 94
           ELP  L  L AL+ L  +    +E+L  E ++ LTSL  LS+S C  LK LP    + HL
Sbjct: 883 ELPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSVSNCMMLKCLPE--GLQHL 942

Query: 95  TRLSRLHVFQCP 106
           T L+ L + QCP
Sbjct: 943 TALTTLTITQCP 952

BLAST of Spg035346 vs. ExPASy Swiss-Prot
Match: Q7XBQ9 (Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.8e-04
Identity = 32/74 (43.24%), Postives = 40/74 (54.05%), Query Frame = 0

Query: 35  ELPQQLEHLTALQDLSIQDFGRIEAL-REWLRNLTSLRTLSLSFCKNLKLLPSKGAMLHL 94
           ELP  L  L AL+ L IQ    +E+L  E L  L+SL  L +  C  LK LP    + HL
Sbjct: 874 ELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLPE--GLQHL 933

Query: 95  TRLSRLHVFQCPQL 108
           T L+ L +  CPQL
Sbjct: 934 TTLTSLKIRGCPQL 945

BLAST of Spg035346 vs. ExPASy TrEMBL
Match: Q694W1 (Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 0

Query: 32  TATELPQQLEHLTALQDLSIQDFGRIEALREWLRNLTSLRTLSLSFCKNLKLLPSKGAML 91
           + T++PQQL+HLTAL+ LSI++FG IEAL EWL N   L+TLSL  CKNLK LPS  AML
Sbjct: 450 SVTQIPQQLQHLTALEFLSIENFGGIEALPEWLGNFVCLQTLSLFNCKNLKKLPSTEAML 509

Query: 92  HLTRLSRLHVFQCPQLRLGQSHTERAKLFHLPTICIQDD 131
            LT+L+RL   +CPQL LG    E AKL HLP I I  D
Sbjct: 510 CLTKLNRLDACRCPQLLLGNGDMEGAKLSHLPQISIYRD 548

BLAST of Spg035346 vs. ExPASy TrEMBL
Match: A0A0A0LCB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G684170 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-21
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 0

Query: 32   TATELPQQLEHLTALQDLSIQDFGRIEALREWLRNLTSLRTLSLSFCKNLKLLPSKGAML 91
            + T++P+QL+HLTALQ LSIQ F RIEAL EWL N   L+TL+L  CK LK LPS  AML
Sbjct: 986  SVTQIPEQLQHLTALQFLSIQHFRRIEALPEWLGNYVCLQTLNLWNCKKLKKLPSTEAML 1045

Query: 92   HLTRLSRLHVFQCPQLRLGQSHTERAKLFHLPTICI 128
             LT+L++LHV  CPQL L +   ERAKL HLP I I
Sbjct: 1046 RLTKLNKLHVCDCPQLLLEEGDMERAKLSHLPEIQI 1081

BLAST of Spg035346 vs. ExPASy TrEMBL
Match: A0A0A0LBV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822360 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.5e-20
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 0

Query: 34   TELPQQLEHLTALQDLSIQDFGRIEALREWLRNLTSLRTLSLSFCKNLKLLPSKGAMLHL 93
            T+LPQQL+HLT LQ L I  F  IEAL EW+ NL SL+TL  S+C  LK LPS+ A+L L
Sbjct: 949  TQLPQQLQHLTNLQVLKITQFDCIEALPEWIGNLISLKTLKCSYCFKLKELPSREAILRL 1008

Query: 94   TRLSRLHVFQCPQLRLGQSHTERAKLFHLPTICIQDDD 132
            T+L  L +F+CP+L +G+   ERAKL HLP+ C+   +
Sbjct: 1009 TKLENLDIFECPKLLVGEGDQERAKLSHLPSKCVHKSE 1046

BLAST of Spg035346 vs. ExPASy TrEMBL
Match: A0A6J1D340 (disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111017143 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.5e-20
Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 0

Query: 32   TATELPQQLEHLTALQDLSIQDFGRIEALREWLRNLTSLRTLSLSFCKNLKLLPSKGAML 91
            TAT +P+Q+EH T L+ L I++F  IEAL EW  N TSL+ L L FC NLK LPS+ AML
Sbjct: 983  TATHVPRQVEHCTTLKFLIIENFEHIEALPEWFGNFTSLKRLGLYFCSNLKQLPSREAML 1042

Query: 92   HLTRLSRLHVFQCPQLRLGQSHTERAKLFHLPTICIQ 129
             LT L  L+V +CPQL+L +  TERAKL HLP I ++
Sbjct: 1043 RLTELRALYVDRCPQLQLDEGDTERAKLSHLPEIDVR 1079

BLAST of Spg035346 vs. ExPASy TrEMBL
Match: A0A0A0LRE1 (NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G435460 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 53/97 (54.64%), Postives = 70/97 (72.16%), Query Frame = 0

Query: 32  TATELPQQLEHLTALQDLSIQDFGRIEALREWLRNLTSLRTLSLSFCKNLKLLPSKGAML 91
           + T++ +QL+HLTAL+ LSI++FG IEAL EWL N   L+TLSL  CKNLK LPS  AML
Sbjct: 803 SVTQISEQLQHLTALEFLSIENFGGIEALPEWLGNFVCLQTLSLYNCKNLKKLPSTKAML 862

Query: 92  HLTRLSRLHVFQCPQLRLGQSHTERAKLFHLPTICIQ 129
            LT+L++L+  +CP L L +   ERAKL H P + +Q
Sbjct: 863 RLTKLNQLYACKCPMLLLEEGDPERAKLSHFPNMLVQ 899

BLAST of Spg035346 vs. TAIR 10
Match: AT5G17680.1 (disease resistance protein (TIR-NBS-LRR class), putative )

HSP 1 Score: 47.8 bits (112), Expect = 8.3e-06
Identity = 26/75 (34.67%), Postives = 40/75 (53.33%), Query Frame = 0

Query: 31  QTATELPQQLEHLTALQDLSIQDFGRIEALREWLRNLTSLRTLSLSFCKNLKLLPSKGAM 90
           Q    LP  L HL +L+ L++    R+E L + L+NLTSL TL +S C N+   P     
Sbjct: 750 QRLRTLPSYLGHLVSLKSLNLDGCRRLENLPDTLQNLTSLETLEVSGCLNVNEFPRVSTS 809

Query: 91  LHLTRLSRLHVFQCP 106
           + + R+S   + + P
Sbjct: 810 IEVLRISETSIEEIP 824

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038904500.11.3e-2163.16disease resistance protein RGA2-like, partial [Benincasa hispida][more]
XP_038901555.12.2e-2160.64putative disease resistance protein RGA3 [Benincasa hispida][more]
AAT77098.13.8e-2160.61Fom-2 protein, partial [Cucumis melo][more]
XP_004149742.26.5e-2161.46disease resistance protein RGA2 [Cucumis sativus] >KGN58559.1 hypothetical prote... [more]
XP_038877313.18.5e-2155.24putative disease resistance protein RGA3 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q7XA391.5e-0435.05Putative disease resistance protein RGA4 OS=Solanum bulbocastanum OX=147425 GN=R... [more]
Q7XA422.0e-0443.06Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=R... [more]
Q7XBQ95.8e-0443.24Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 ... [more]
Match NameE-valueIdentityDescription
Q694W11.9e-2160.61Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1[more]
A0A0A0LCB53.2e-2161.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G684170 PE=4 SV=1[more]
A0A0A0LBV03.5e-2054.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822360 PE=4 SV=1[more]
A0A6J1D3403.5e-2056.70disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A0A0LRE11.7e-1954.64NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G435460 PE=4... [more]
Match NameE-valueIdentityDescription
AT5G17680.18.3e-0634.67disease resistance protein (TIR-NBS-LRR class), putative [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 28..122
e-value: 9.4E-16
score: 59.2
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 31..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035346.1Spg035346.1mRNA