Spg035346 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGTCACAGCGTTGCGACGCTGTCGACTTGTTCAGCAAGAAATGGCCCGTCCATGCTCCTATAAATAGCCCCCCTTCCTTTGGTTCAAATCATTCCATTTTGGGGAGAGTTCTCCCCTAGCTCAAAAGAGAGAAAAAGAAAGTAGAGTTGTTAAGAAAAAGGTGGAATTAAGCGAGATTCCAAGGTTCGGGATTTGAGATGATCGTAACGGGAGCTTGGGATCAACTTATCGGTTATTTCTTCCTTACTCCTTTGTAATTCTTTATTGTAGTTTGAGTTAGGCCTATGGATCAAGATCACTTGGGCAAAATTATTTCCATTTGTGAGTAGATATTGGGACCTAGGGTTGTTATTCTAGCTAATTGGATATTGTAGCTTAATTCATTGGATTTTGTAACGAAGCTCTTCATATTTCATCTATGCAATTCATTCTTAATTCTTTTAATCTCTTGATCACGGATTAATTGTTGTGTTGGTCGAAATTAATACTCGACAGAGAGAACTTAGATTAGATCCAAATTGCATGGCTAATGATTGCTTGGAACACGAGAGTGAAAAAGAATTGTTAGAAATTGATAATGAAGTTGCTTAATGCCATACTATGATTAACTAAAGAAATGGACACATGAATTAGTTATGTTAGTATGAGATGTGAAGGAGCTTGAAAAGAAATCCGCTTGAAATTACTTCTAGATTTATGGAATTGAAGATTAGTAAGTACATTCATCCAATTAATTGAGCTACAAATCCAAGAAAGCTAGATAACACCCAAGGTCAAGTCCCTTTAATAGGATATTTACATTTTAATTGCATGATTTCTTTAGTTTCTTGTTAATTCTTTATTTCTTTAAAGTTGAGCTTCTAAATAAAATTAAGCATGTTGGTTCTCGGTAATTAATGGACATAAATCAATTTCCCTGAGGATTCGATACTCGGAATACTTTCCGTTTTAATATTATCTGGGTAACCGTACGCTTGCGGAAAAGTGCAACAAACTGCGACTGAGCTTCCCCAACAACTCGAGCACCTCACTGCCTTGCAAGATCTATCCATTCAAGATTTTGGTCGCATTGAAGCTTTGCGAGAATGGTTGAGAAACCTTACATCATTGCGAACGCTGAGTCTTTCTTTTTGCAAAAATTTGAAACTGTTGCCTTCCAAGGGAGCCATGCTACACCTCACCAGATTAAGTCGATTACATGTTTTTCAGTGTCCACAGCTACGGCTTGGTCAAAGCCACACGGAGCGAGCCAAACTTTTCCATCTTCCAACAATTTGTATTCAAGATGATGATGAAGAGTTGTTTTGA ATGACGTCACAGCGTTGCGACGCTGTCGACTTGTTCAGCAAGAAATGGCCCGTCCATGCTCCTATAAATAGCCCCCCTTCCTTTGTGCAACAAACTGCGACTGAGCTTCCCCAACAACTCGAGCACCTCACTGCCTTGCAAGATCTATCCATTCAAGATTTTGGTCGCATTGAAGCTTTGCGAGAATGGTTGAGAAACCTTACATCATTGCGAACGCTGAGTCTTTCTTTTTGCAAAAATTTGAAACTGTTGCCTTCCAAGGGAGCCATGCTACACCTCACCAGATTAAGTCGATTACATGTTTTTCAGTGTCCACAGCTACGGCTTGGTCAAAGCCACACGGAGCGAGCCAAACTTTTCCATCTTCCAACAATTTGTATTCAAGATGATGATGAAGAGTTGTTTTGA ATGACGTCACAGCGTTGCGACGCTGTCGACTTGTTCAGCAAGAAATGGCCCGTCCATGCTCCTATAAATAGCCCCCCTTCCTTTGTGCAACAAACTGCGACTGAGCTTCCCCAACAACTCGAGCACCTCACTGCCTTGCAAGATCTATCCATTCAAGATTTTGGTCGCATTGAAGCTTTGCGAGAATGGTTGAGAAACCTTACATCATTGCGAACGCTGAGTCTTTCTTTTTGCAAAAATTTGAAACTGTTGCCTTCCAAGGGAGCCATGCTACACCTCACCAGATTAAGTCGATTACATGTTTTTCAGTGTCCACAGCTACGGCTTGGTCAAAGCCACACGGAGCGAGCCAAACTTTTCCATCTTCCAACAATTTGTATTCAAGATGATGATGAAGAGTTGTTTTGA MTSQRCDAVDLFSKKWPVHAPINSPPSFVQQTATELPQQLEHLTALQDLSIQDFGRIEALREWLRNLTSLRTLSLSFCKNLKLLPSKGAMLHLTRLSRLHVFQCPQLRLGQSHTERAKLFHLPTICIQDDDEELF Homology
BLAST of Spg035346 vs. NCBI nr
Match: XP_038904500.1 (disease resistance protein RGA2-like, partial [Benincasa hispida]) HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21 Identity = 60/95 (63.16%), Postives = 70/95 (73.68%), Query Frame = 0
BLAST of Spg035346 vs. NCBI nr
Match: XP_038901555.1 (putative disease resistance protein RGA3 [Benincasa hispida]) HSP 1 Score: 112.8 bits (281), Expect = 2.2e-21 Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 0
BLAST of Spg035346 vs. NCBI nr
Match: AAT77098.1 (Fom-2 protein, partial [Cucumis melo]) HSP 1 Score: 112.1 bits (279), Expect = 3.8e-21 Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 0
BLAST of Spg035346 vs. NCBI nr
Match: XP_004149742.2 (disease resistance protein RGA2 [Cucumis sativus] >KGN58559.1 hypothetical protein Csa_001108 [Cucumis sativus]) HSP 1 Score: 111.3 bits (277), Expect = 6.5e-21 Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 0
BLAST of Spg035346 vs. NCBI nr
Match: XP_038877313.1 (putative disease resistance protein RGA3 [Benincasa hispida]) HSP 1 Score: 110.9 bits (276), Expect = 8.5e-21 Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 0
BLAST of Spg035346 vs. ExPASy Swiss-Prot
Match: Q7XA39 (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum OX=147425 GN=RGA4 PE=2 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 1.5e-04 Identity = 34/97 (35.05%), Postives = 50/97 (51.55%), Query Frame = 0
BLAST of Spg035346 vs. ExPASy Swiss-Prot
Match: Q7XA42 (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2) HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04 Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 0
BLAST of Spg035346 vs. ExPASy Swiss-Prot
Match: Q7XBQ9 (Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 5.8e-04 Identity = 32/74 (43.24%), Postives = 40/74 (54.05%), Query Frame = 0
BLAST of Spg035346 vs. ExPASy TrEMBL
Match: Q694W1 (Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21 Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 0
BLAST of Spg035346 vs. ExPASy TrEMBL
Match: A0A0A0LCB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G684170 PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 3.2e-21 Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 0
BLAST of Spg035346 vs. ExPASy TrEMBL
Match: A0A0A0LBV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822360 PE=4 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 3.5e-20 Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 0
BLAST of Spg035346 vs. ExPASy TrEMBL
Match: A0A6J1D340 (disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111017143 PE=4 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 3.5e-20 Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 0
BLAST of Spg035346 vs. ExPASy TrEMBL
Match: A0A0A0LRE1 (NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G435460 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19 Identity = 53/97 (54.64%), Postives = 70/97 (72.16%), Query Frame = 0
BLAST of Spg035346 vs. TAIR 10
Match: AT5G17680.1 (disease resistance protein (TIR-NBS-LRR class), putative ) HSP 1 Score: 47.8 bits (112), Expect = 8.3e-06 Identity = 26/75 (34.67%), Postives = 40/75 (53.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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