Spg035336 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg035336
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Gag/pol protein
Location	scaffold7: 21173881 .. 21180018 (+)
RNA-Seq Expression	Spg035336
Synteny	Spg035336

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAACAATATAAAGGAGCTGGATTTGGAGAACTTAAGTCCTCATGTCTTTACGCAGTTGCTGAACTTAAGTCCTCATCTGTTCGGGCACCTACTAATGTTGCGATGTATGGCATCTCACACCGTCATTCTTTATAAAGCATGACAGTACTTAAAAGTTGATGGAAAAAAGACCAAAATAATGAATTTTGACAAAAAAAATCTTTATAGCACCAAATTCGGTGCTAATTATTTCTGTAAATTTTGCTTATCCTAATGCTATTATTTGTGATAATTAGATAATTTTGAGTGTTATTGATGTATAGGTCAATTTGGTGTTCTCGGGATCAAGAAGGACATTTTGGTAATTGAAAGTCAACCAAAAAGTCAACGAGGAGCAAAAACTCACCAAATTTCCCGAGAGGTAGCGTCGAGACACTACTTCACGGCGTCTCGACGCTACGGGTGCTATGCGCGGACCAATTTAGAGTTAGCGTCGAGACGTTGGCCACGACGTCTCGACGCTGTCGCGGTTTATAAATATCACTTTTTTTATTTTAGGTTTATCCCATGTTCGTCTTTAGTCGTTTTTCCCCTCTTTCTCTCTAATTCGCTCTGTACTTTTCATAGTTCTTAGGCCTTAGAGTAGATTTTCTTAGTTTTCATGGTGGATCGAGCCCGGGAGTGAGGTTCAGCATTCCAAATGACGGGCTAAGCTCATTATTCATGTAATTGGGAACTCGGTTGTAAGTTTGGTTTGGATTTTATGAGATTCTGATTATTTCATTCTTTATTTACTGTTTTATGTGTGTTTCCATTCTATTTTATTCATGATTAGAATTGATAGTAGGGATTGACAACCCCGTTTTCCATCGTTCTAATCATATTCGCTATTGGTAGTAAATAGGTGAAGCATGTGGCTCTAGTTTAGGCATTTTATCCCTAATCTTGCTGCACTTTGCATGTAAGCCTAGAATTGAACACTTAGTTAATTTATAATTTAGGTTTTTCCTAGTTATAAAATTGACTACCTAACTATCCTAATCGTAATGCAATTGTAGCTAGTTAATTCAGCCGGGTTAATTAGTAATCAATTAGTTTACCTTTGATGCATCGGTCGGGTTAATAAAATAGGGATATTATGGCTCTCTGGCTTTTCCAGGAGCACGTTAAGCTTAAAACGTAAATCTCATCATTAGATAATCTTAGATTAAGATCCATCCAAACGAGCACCGAATGTACCGATTGCATGAATCCGAGGTTCGATCAACCACTCCCTTTTATTTTTCCACCATTTAATTTTTGCACTTTATTTTCTGTCATTTAAATTCTCGCTATTTAATTTCCTTCACCCTTTCCTCTTGCATCTCAAATCCCCCCATTAGTCTGGTCGTCTCAATAAATTTAGGGAAAAATACACTTTTGGTCCCTGAAGTTTGGGTTAAGTAACACTTTAGTCCTTGAGTTTTAAAACTCAACAAATATACCCCTGAGGTTTGGATTTCGTTACACATGCATTTGGTCCCTCCGTCCAATTTTCTGTTAAATCCTAACTGTTTGCTGACGTGGCACTATTATTTAATTAAAAAAAATTATTTTTTAATTTTTAAATAAAAATCTATTAAAATAATTTAAATATTTTTTTATTTCTTTCTCTCTCCCTTTTTTTCCCTTATTCTCTTTCTTCTACTCCTCCCTCTTTTTCATCTTATTCTTCATCACCTTCCTCCTCAACTCCGGTGGCCGCCGCCGCCGGCAACGTGTTTTTTTTCTTCTTCTTATCTTTTCTCTTCTTTGCCAACGCCCAATAGCTTCCTCCGACAGCCTCAACTCACGTATCGAGACCCAAAAATCAAGACCCACAAGCATCCTCCGACAGCACGCACATCTCCGACGGGCATCTTCTTCACCTTTGAGCAAGGTCTCCGACGAGCATCGAGACCCAGATCTGGGCGAGCATCTGAGCAAGGTCTCCGACGAGCAAGGTCTTGGATTGCAAGAAACTCGAAGGAGAAAGAAACCCGCGTCGTGGACTGCCGCTGCTCGTGAACGTTGCGTCGTCGGAGTTCCACTTTCGACAAATCCGACTGGAATGTTGCGTCGTCGACGGCCCGGGATTGCCCCTCTCCTCCCTCTCCAACGTGTTTCTCGACAAATCAAGCTGGAAGTTTCAGATCTGGGATATTTTTGGCCAGATCTGCGTCGTCGAGCCATGGGTCTTTCCGGAACTACCAGATCTGAAGAGAGATGCGCGTGGGTCTTCCAATTCCGGCAACCGTGGGTCTTTGAGCACAAACACAAATTCGTCTCTGGCGGGTCGAGAAGCTCGGAAAAAGAAGAGGGAAGAAGAAAGGAGGCAGAAGAAGAGAAAAAAAAAATAAAAAAATTTCCAGTGGTAGCTGTCGGCGGTCGGCGGCAACCGTGGGTTGGTGGTGATGGTGGTTGAAAGGAGAGTTGATGTGATGGTGGTTTAGGAGAAGAAGAAGAATGGAGAAAAAATAATAAAGAAATAAAATTAATATAAAATAATAATATTTTATTTAAAAAATTAAATTTTAATTTTTTTAAATTAAAATAATAGTGCCACGTCAGCAATCCGTTAGGATTTAACGGCAAAATGGATGGCAGGGACCAAATTGCTCCTTATCTCAAACCTCAGGGGTAATTTCGTTGAGTTTGAAAACTCAAGGACCAAAGTGTAACTTAACCCAAACCTCAGGGACCAAAAGTGTATTTTTCCCATAAATTTAAGTTAAGCAAATTATAAAGGCACTCCCTGTGTTCGGCCCCGGCCACTACTGCTGCAAAGTAGTTTAGTGTTCGGTGATTATAAATTTATTTGGCAAGGACGTTGGAGAATTCGACACCCTCCGAATCGGTCCCGCCAGTCAATTTATTTATTATTACATCCTCATCTTATTTTCTTTGTTATTTCTAAAACATCATCATATTCATAGAATGTAAATTCTCGTTATATGTTAGTAATGTTTTACAAAGGCGTGTATTTCATTGTTCCATTACAATTTGGGTGGCAAGATAATTTGATTTAGGGGAAACCTGTAGTTAATCGTGTGTTTTCTCCACCATTTTGACTTTACTAGCTTCTTCTATCCATTATAGGGCAATAATTCAAGGTGAGTGGTTCTGTGGTGAGGAATATGTTTCAATTATCTAATACCGAGTTGAATGTAAAGTTAAAATGATGTCTTGTTGAGAAAATAAATAGAAAATATCACATGAGCAATAATTCTTCACAAATGATAGGAAAATTAATTTTGGAACGTAATTAGTTAACGGTGTTACATCTAATGACTGTTATTTCGCGGTTTGATCTTATGCAAACTCATTGCATAGAATACCCTCACTCGCATGTCTCCTACATGAACAACTTAGATTAATTTGTTAGTATCAAATACAAAGTGGTCATATCCATAGGGTCGCCAGGATAAGGTACCCAACCTTATCCCTATACTATAAATCTTTTAGGTTATTACTTGAACATGATCCTCTATATGTCACCACAAACTGTTCAAGCCTCATTAAATAATCTTGGATGTTAGTTTATTGGATTTGGGTCAAGAATGCAATTCTAAAAGAAACATTAATAACATCTTTATTGAATAAGTAATATTTGTTTACATTTACTATCCACGAGTTTTAGGGAATAAAACCCAACAATGTGTTCTTGCAGGTGACACCTATGAAAGGAGTTCTTCGTTTTGGTAAGAAGGGGAAGCTTAGTCCCAGGTTCATTAGACCTTATGAGATATTGGAGCGCATTAGTCCTGTTGCTTACAGGTTGGCGTTTCTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGTACCTTTTTTACGGAACATTAATAAAATGATGTATTATTTATTTTTCTGTGTTTGTATTGAGTAATCTTGCCTCATCAACCCTAATCCAATAAACTAAACATCCTAGGCTGATAGTATGAGGCTTGAACTAGTATGTAGAGACATACGGGGATCAATGTTCAAGATTCAGCCTAAAGGGTCTATAGTATAGGGATAAGGCTGGGTACCTTATCCTAGTGACACTATGGATACAGCCCGCTTTGTATGATGATACAAACGTATTGATCCAACGCGTTCATGTAGTTGACATGCAAGTGGGGGTATCCTATGCAATGAGTTTGCATAAGATCGGACCGCGAAATAGTTAACCACTAGCTGTAACACCGTTAGTTAGTTTGGTTTCTATTTCACTAGGATGACCTAGGCAACTTGGTCTCAATCCTGAGTGGGTTATGGACACCTGTCCGTGAGGGATTGTCCTTTGATTTGTACAGGTGAGAGTGGCCTGCACGCCGACTCAATATGCCTACCATTTTAGGGACAAGACCGAGTGGGGAGCTGAGAACATAATCACACAAGATGGAATTCACTCCTTCCCGACTCTAGGGTAAGTAGAGGTGTGTTCCCTTAAGTGGTGTCTCCGGGTCTTGAACAATGGGCCCTGCCCTCTTTATGGCACGAGAGGGACTTCTGTTTGTTGGTTGGACCTCATACAGGTTGTTCATTAGTGGAGCACTGGAACTTAAGGATGAAAAGGTAGCCAAAGGGTAAAATGGTAATTTGACCTAGCTGGGGTACGAACACACGTGAAGGGCTGACTTGTTGTTATTGGTCAATATCCGTGGACACAGAAATATATCTGTAGTGAGAAGAGTGCAACTGTGGTTCTATAGTGGAGTGAACCATAGTTAACGAACATTGATTAACTTGGTTAATGAGTTTAACCACTTAATCTCATATCGTTGGAGCTTCTGATCTGTAGGTCCATCAGGTCTCACCGATGGCTCAAATAAGGTGTTGTGGTTATTTTCTAAGGAAAATTTGTATATTCGAAGTTGTTCGAATATTAAGTTTAAAATATGAATTTGGTTCATATTGAAACTATAGGTTATAATTAATGCGCATTAGATGTACATTAATACTATAGTTTAGTTGGGAGAAATATGATTAAATATATGATATTTAATTATATTAATTAATTATTGAATTAATTAATTATGAGTTTTAATTTAATTTAATTAAATTGGGATTTAATTAAATTGCATTGAAACCATAGGTTATGTGAAGGATACTCATTTAATGAGTTGGTTAATTAATTATGAATTAATTAACTTTTAATTTTAATTTAATTTAATTAATTTGGTTAATTAATTAAATTATAATTTGAATTAATAACTTATTCTGATCAGTTACCAGATCGTGGCTTTTGACCCATTTAACTCACCTTCACGCCTAAATAGGAGGGATCTTTGAGTTTTAGCAGTTCGTTGTTTTGTGGTATAGGCTCTCACGAAAACTCCAAAGAAAGAAATCCCAGAAACTTTTGTTCTCTCAACATTCCCTTAGAGAAATCAGTGCTCCCACAAGCCTACTCATCGTAACCTTTAGAGATCATTGGTGTAGCTTTGTGGTGGTGTTCGTGGAGGAAAATCCAGCAAAGGAGAACAAACGAAGCTTGCTAAAATTTTCTGTTTTTGGCTAAGGAGTTGGCGAAACGTTCGAGAATTTCTAGCAAAGTAAGATCCTATTGGACCTTGATCATTAGGATCGTTTCTTTTAAATTAGATCTAAGTTTCATATGTTAAATAGCATGTTTTATAACTGATTAACAGCAGTTCCATTTTTGTTCATATTGTTGTAAATTTAATTTGCAAACCGTATCGGTATTTTAATCGTGATAAAAACACATTGAGGTTCTGTAATACTTCCGCTGCGTAGGTCTTTTATCCCTTCAATTGGTATCAGAGCCATCTCTGTATTTTTTATTATTGATTGAAATTTGCGGTTTGTTTTTGGTGTGATTTTACATAACGTATGATTATGGGTTTGCGTATAAATGTTTCGACTAATTTGGCCATAGATTTACGTTTTATGAATTATTCATATGTAAGGGCCCTTGCGTTTTTTGGGCAATCAATGTAAATCTATTTTCCTCTGTAAGTCCGAGTTTAGTTTAGGATTTTTTTGGGATGAAGATCACTGAAAATCGCGCCCAAAATCGAGGCCAAATTGAAGAACAGTGTTGGAATTGCCCAGAATTTGCCCCCAGACGTACAAGCGTCTCGACGCAATCGCGATAATTTGCAGCGTGCGGTTAGGGTTACGTGA

mRNA sequence

ATGATGGAACAATATAAAGGAGCTGGATTTGGAGAACTTAAGTCCTCATGTCTTTACGCAGTTGCTGAACTTAAGTCCTCATCTGTTCGGGCACCTACTAATGTTGCGATGTCAATTTGGTGTTCTCGGGATCAAGAAGGACATTTTGGTGAAGCATGTGGCTCTAGTTTAGGCATTTTATCCCTAATCTTGCTGCACTTTGCATCTTCCTCCGACAGCCTCAACTCACGTATCGAGACCCAAAAATCAAGACCCACAAGCATCCTCCGACAGCACGCACATCTCCGACGGGCATCTTCTTCACCTTTGAGCAAGGTCTCCGACGAGCATCGAGACCCAGATCTGGGCGAGCATCTGAGCAAGGTCTCCGACGAGCAAGGTCTTGGATTGCAAGAAACTCGAAGGAGAAAGAAACCCGCGTCGTGGACTGCCGCTGCTCGTGAACGTTGCGTCGTCGGAGTTCCACTTTCGACAAATCCGACTGGAATGTTGCGTCGTCGACGGCCCGGGATTGCCCCTCTCCTCCCTCTCCAACGTGTTTCTCGACAAATCAAGCTGGAAGTTTCAGATCTGGGATATTTTTGGCCAGATCTGCGTCGTCGAGCCATGGGTCTTTCCGGAACTACCAGATCTGAAGAGAGATGCGCGTGGGTCTTCCAATTCCGGCAACCGTGGGTCTTTGAGCACAAACACAAATTCGTGAGAGTGGCCTGCACGCCGACTCAATATGCCTACCATTTTAGGGACAAGACCGAGTGGGGAGCTGAGAACATAATCACACAAGATGGAATTCACTCCTTCCCGACTCTAGGGTTGTTCATTAGTGGAGCACTGGAACTTAAGGATGAAAAGGTAGCCAAAGGAAATATATCTGTAGTGAGAAGAGTGCAACTGTGGTTCTATAGTGGAGTGAACCATAGTCCATCAGGTCTCACCGATGGCTCAAATAAGCTTTGTGGTGGTGTTCGTGGAGGAAAATCCAGCAAAGGAGAACAAACGAAGCTTGCTAAAATTTTCTGTTTTTGGCTAAGGAGTTGGCGAAACGTTCGAGAATTTCTAGCAAAATCACTGAAAATCGCGCCCAAAATCGAGGCCAAATTGAAGAACAGTGTTGGAATTGCCCAGAATTTGCCCCCAGACGTACAAGCGTCTCGACGCAATCGCGATAATTTGCAGCGTGCGGTTAGGGTTACGTGA

Coding sequence (CDS)

ATGATGGAACAATATAAAGGAGCTGGATTTGGAGAACTTAAGTCCTCATGTCTTTACGCAGTTGCTGAACTTAAGTCCTCATCTGTTCGGGCACCTACTAATGTTGCGATGTCAATTTGGTGTTCTCGGGATCAAGAAGGACATTTTGGTGAAGCATGTGGCTCTAGTTTAGGCATTTTATCCCTAATCTTGCTGCACTTTGCATCTTCCTCCGACAGCCTCAACTCACGTATCGAGACCCAAAAATCAAGACCCACAAGCATCCTCCGACAGCACGCACATCTCCGACGGGCATCTTCTTCACCTTTGAGCAAGGTCTCCGACGAGCATCGAGACCCAGATCTGGGCGAGCATCTGAGCAAGGTCTCCGACGAGCAAGGTCTTGGATTGCAAGAAACTCGAAGGAGAAAGAAACCCGCGTCGTGGACTGCCGCTGCTCGTGAACGTTGCGTCGTCGGAGTTCCACTTTCGACAAATCCGACTGGAATGTTGCGTCGTCGACGGCCCGGGATTGCCCCTCTCCTCCCTCTCCAACGTGTTTCTCGACAAATCAAGCTGGAAGTTTCAGATCTGGGATATTTTTGGCCAGATCTGCGTCGTCGAGCCATGGGTCTTTCCGGAACTACCAGATCTGAAGAGAGATGCGCGTGGGTCTTCCAATTCCGGCAACCGTGGGTCTTTGAGCACAAACACAAATTCGTGAGAGTGGCCTGCACGCCGACTCAATATGCCTACCATTTTAGGGACAAGACCGAGTGGGGAGCTGAGAACATAATCACACAAGATGGAATTCACTCCTTCCCGACTCTAGGGTTGTTCATTAGTGGAGCACTGGAACTTAAGGATGAAAAGGTAGCCAAAGGAAATATATCTGTAGTGAGAAGAGTGCAACTGTGGTTCTATAGTGGAGTGAACCATAGTCCATCAGGTCTCACCGATGGCTCAAATAAGCTTTGTGGTGGTGTTCGTGGAGGAAAATCCAGCAAAGGAGAACAAACGAAGCTTGCTAAAATTTTCTGTTTTTGGCTAAGGAGTTGGCGAAACGTTCGAGAATTTCTAGCAAAATCACTGAAAATCGCGCCCAAAATCGAGGCCAAATTGAAGAACAGTGTTGGAATTGCCCAGAATTTGCCCCCAGACGTACAAGCGTCTCGACGCAATCGCGATAATTTGCAGCGTGCGGTTAGGGTTACGTGA

Protein sequence

MMEQYKGAGFGELKSSCLYAVAELKSSSVRAPTNVAMSIWCSRDQEGHFGEACGSSLGILSLILLHFASSSDSLNSRIETQKSRPTSILRQHAHLRRASSSPLSKVSDEHRDPDLGEHLSKVSDEQGLGLQETRRRKKPASWTAAARERCVVGVPLSTNPTGMLRRRRPGIAPLLPLQRVSRQIKLEVSDLGYFWPDLRRRAMGLSGTTRSEERCAWVFQFRQPWVFEHKHKFVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFISGALELKDEKVAKGNISVVRRVQLWFYSGVNHSPSGLTDGSNKLCGGVRGGKSSKGEQTKLAKIFCFWLRSWRNVREFLAKSLKIAPKIEAKLKNSVGIAQNLPPDVQASRRNRDNLQRAVRVT

Homology

[Close]

BLAST of Spg035336 vs. NCBI nr
Match: TYK26313.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 5.6e-12
Identity = 40/53 (75.47%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 232 KFVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFISGALELKDEK 285
           K VRVA  PT+YAYHF DKTEWG  NIITQDGIHSFP L LFI GAL  KD K
Sbjct: 195 KKVRVARLPTRYAYHFGDKTEWGVGNIITQDGIHSFPPLRLFIRGALIFKDYK 247

[Close]

BLAST of Spg035336 vs. NCBI nr
Match: KAA0067076.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 5.6e-12
Identity = 40/53 (75.47%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 232 KFVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFISGALELKDEK 285
           K VRVA  PT+YAYHF DKTEWG  NIITQDGIHSFP L LFI GAL  KD K
Sbjct: 172 KKVRVARLPTRYAYHFGDKTEWGVGNIITQDGIHSFPPLRLFIRGALIFKDYK 224

[Close]

BLAST of Spg035336 vs. NCBI nr
Match: KAA0042877.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK05280.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-10
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 234 VRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFIS 276
           VRVA   TQYAYHF DKTEWGAENIITQDGIHSFP LG+FIS
Sbjct: 756 VRVAKLSTQYAYHFGDKTEWGAENIITQDGIHSFPPLGVFIS 797

[Close]

BLAST of Spg035336 vs. NCBI nr
Match: KAA0043328.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-09
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 233 FVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLG 272
           ++RVA  PTQYAYHF DKTEWGA NIITQDGIHSFP LG
Sbjct: 168 YIRVAKLPTQYAYHFEDKTEWGAGNIITQDGIHSFPPLG 206

[Close]

BLAST of Spg035336 vs. NCBI nr
Match: KAA0065950.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 4.4e-09
Identity = 33/38 (86.84%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 234 VRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLG 272
           VRVA  PTQYAYHF DKTEWGA NIITQDGIHSFP LG
Sbjct: 97  VRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]

BLAST of Spg035336 vs. ExPASy TrEMBL
Match: A0A5A7VKV9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001280 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-12
Identity = 40/53 (75.47%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 232 KFVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFISGALELKDEK 285
           K VRVA  PT+YAYHF DKTEWG  NIITQDGIHSFP L LFI GAL  KD K
Sbjct: 172 KKVRVARLPTRYAYHFGDKTEWGVGNIITQDGIHSFPPLRLFIRGALIFKDYK 224

[Close]

BLAST of Spg035336 vs. ExPASy TrEMBL
Match: A0A5D3DRR2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00930 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-12
Identity = 40/53 (75.47%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 232 KFVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFISGALELKDEK 285
           K VRVA  PT+YAYHF DKTEWG  NIITQDGIHSFP L LFI GAL  KD K
Sbjct: 195 KKVRVARLPTRYAYHFGDKTEWGVGNIITQDGIHSFPPLRLFIRGALIFKDYK 247

[Close]

BLAST of Spg035336 vs. ExPASy TrEMBL
Match: A0A5D3C1P5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00970 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.1e-11
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 234 VRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFIS 276
           VRVA   TQYAYHF DKTEWGAENIITQDGIHSFP LG+FIS
Sbjct: 756 VRVAKLSTQYAYHFGDKTEWGAENIITQDGIHSFPPLGVFIS 797

[Close]

BLAST of Spg035336 vs. ExPASy TrEMBL
Match: A0A5A7TKJ4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002390 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.7e-10
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 233 FVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLG 272
           ++RVA  PTQYAYHF DKTEWGA NIITQDGIHSFP LG
Sbjct: 168 YIRVAKLPTQYAYHFEDKTEWGAGNIITQDGIHSFPPLG 206

[Close]

BLAST of Spg035336 vs. ExPASy TrEMBL
Match: A0A5A7VFG5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00390 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-09
Identity = 33/38 (86.84%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 234 VRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLG 272
           VRVA  PTQYAYHF DKTEWGA NIITQDGIHSFP LG
Sbjct: 97  VRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

The following BLAST results are available for this feature:

BLAST of Spg035336 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK26313.1	5.6e-12	75.47	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0067076.1	5.6e-12	75.47	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0042877.1	1.1e-10	85.71	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK05280.1 gag-pol polyprotein [...	[more]
KAA0043328.1	2.0e-09	82.05	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0065950.1	4.4e-09	86.84	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-cop...	[more]

BLAST of Spg035336 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg035336 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VKV9	2.7e-12	75.47	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G00128...	[more]
A0A5D3DRR2	2.7e-12	75.47	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00930...	[more]
A0A5D3C1P5	5.1e-11	85.71	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G...	[more]
A0A5A7TKJ4	9.7e-10	82.05	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G0023...	[more]
A0A5A7VFG5	2.2e-09	86.84	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Spg035336 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 378..398

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg035336.1	Spg035336.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding