Spg035217 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035217
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationscaffold4: 24307289 .. 24307873 (-)
RNA-Seq ExpressionSpg035217
SyntenySpg035217
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACTAATCCACCAGTAAACCCTAGTTCTTCTTCATCCACGACTCAACCTACCAGTCAATCGATTATTGAACAGTATGAGAATCCTTATTTTCTTCAACGTCTTGTTCTCGTATCTGATCCCTTAACCGAATCTAATTACACTTCTTGGAGTCAAGCAATGGTAATCAGTCTCACTGTCAAGAGCAAGATGGGTTTTTGATAGGACCAATTTAGTCCTATTTATTTAAGCCTAATCATGTTAGTTTTATAGTTATGTTCTTAATTGTTATATTTTGTAAGGAATTGACGTTTATGCTTCCTGGGAGCATTTTGGAGAAAAAAGGGGTTAAAAGGAAGAAATTAGGGGAAATCCATAGCATCGGAAGTCAAATTAATGAAGTGAAGCGATTTTGTTGATAGTTCCCTTCCTCGTCCAGATAATGAATTGAAGCATTCTTGGATCATCTGCAATGAATTCGTGACTGCCTCGATCCTTAATTCTCTTTCGAAAGAAATTTCCACAAGTGTGAATTTTGCTAAGACTGCTAGAGAAATATGGCTCGACCTTCAGCAGCGCTCATCAGCGGAAGAATTGCCCTAA

mRNA sequence

ATGGACACTAATCCACCAGTAAACCCTAGTTCTTCTTCATCCACGACTCAACCTACCAGTCAATCGATTATTGAACAGTATGAGAATCCTTATTTTCTTCAACGTCTTGTTCTCGTATCTGATCCCTTAACCGAATCTAATTACACTTCTTGGAGTCAAGCAATGGTAATCAGTCTCACTGTCAAGAGCAAGATGGATAATGAATTGAAGCATTCTTGGATCATCTGCAATGAATTCGTGACTGCCTCGATCCTTAATTCTCTTTCGAAAGAAATTTCCACAAGTGTGAATTTTGCTAAGACTGCTAGAGAAATATGGCTCGACCTTCAGCAGCGCTCATCAGCGGAAGAATTGCCCTAA

Coding sequence (CDS)

ATGGACACTAATCCACCAGTAAACCCTAGTTCTTCTTCATCCACGACTCAACCTACCAGTCAATCGATTATTGAACAGTATGAGAATCCTTATTTTCTTCAACGTCTTGTTCTCGTATCTGATCCCTTAACCGAATCTAATTACACTTCTTGGAGTCAAGCAATGGTAATCAGTCTCACTGTCAAGAGCAAGATGGATAATGAATTGAAGCATTCTTGGATCATCTGCAATGAATTCGTGACTGCCTCGATCCTTAATTCTCTTTCGAAAGAAATTTCCACAAGTGTGAATTTTGCTAAGACTGCTAGAGAAATATGGCTCGACCTTCAGCAGCGCTCATCAGCGGAAGAATTGCCCTAA

Protein sequence

MDTNPPVNPSSSSSTTQPTSQSIIEQYENPYFLQRLVLVSDPLTESNYTSWSQAMVISLTVKSKMDNELKHSWIICNEFVTASILNSLSKEISTSVNFAKTAREIWLDLQQRSSAEELP
Homology
BLAST of Spg035217 vs. NCBI nr
Match: XP_038875043.1 (uncharacterized protein LOC120067569 [Benincasa hispida])

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-21
Identity = 65/125 (52.00%), Postives = 81/125 (64.80%), Query Frame = 0

Query: 10  SSSSSTTQPTSQSIIEQYENPYFLQ-----RLVLVSDPLTESNYTSWSQAMVISLTVKSK 69
           S+S    + +  SI+EQY+NPYFL       LV +S+ LTESNY SWSQAM I LTVK+K
Sbjct: 13  SNSMENARASPPSILEQYQNPYFLHPLDSTSLVFISNLLTESNYNSWSQAMKIELTVKNK 72

Query: 70  M----------DNELKHSWIICNEFVTASILNSLSKEISTSVNFAKTAREIWLDLQQRSS 120
           +            EL  SWIICN  VTA ILNSLSKEISTS+NF+ + +EIW+D Q+R  
Sbjct: 73  LGFINVEIPHPSGELLSSWIICNGVVTAWILNSLSKEISTSINFSNSVQEIWVDPQERYQ 132

BLAST of Spg035217 vs. NCBI nr
Match: XP_022152756.1 (uncharacterized protein LOC111020399 [Momordica charantia])

HSP 1 Score: 112.5 bits (280), Expect = 2.6e-21
Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 0

Query: 12  SSSTTQPTSQSIIEQYENPYFLQR-----LVLVSDPLTESNYTSWSQAMVISLTVKSKM- 71
           ++ST+   +   IEQY NPYFL       LVLVSDPLT  NYTSWS++M+I+LTVK+K+ 
Sbjct: 9   TASTSTIIALIAIEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVG 68

Query: 72  ---------DNELKHSWIICNEFVTASILNSLSKEISTSVNFAKTAREIWLDLQQRSSAE 120
                      +L HSWIICN  V + ILNSLSKEIS S+ F+ +AREIWLDL++R   +
Sbjct: 69  FVDGSIVRPTGDLLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLDLKERFEKQ 128

BLAST of Spg035217 vs. NCBI nr
Match: XP_038874906.1 (uncharacterized protein LOC120067409 [Benincasa hispida])

HSP 1 Score: 110.9 bits (276), Expect = 7.5e-21
Identity = 65/128 (50.78%), Postives = 85/128 (66.41%), Query Frame = 0

Query: 8   NPSSSSSTT-QPTSQSIIEQYENPYFLQR-----LVLVSDPLTESNYTSWSQAMVISLTV 67
           +PSS+  TT  P  QS ++QY   YFL       LVLVSD LT+SNY+SWSQ+M +S TV
Sbjct: 18  SPSSNQFTTYAPLVQSFVKQYSCSYFLHHSDSTSLVLVSDLLTKSNYSSWSQSMTLSFTV 77

Query: 68  KSKMD----------NELKHSWIICNEFVTASILNSLSKEISTSVNFAKTAREIWLDLQQ 120
           K+KM            +L++SWIICN  VT  I N+LSK+I+ SVNF+ + REIWLDLQQ
Sbjct: 78  KNKMGFIDGTLPKPIGDLQNSWIICNSVVTTWIFNALSKKIAASVNFSDSTREIWLDLQQ 137

BLAST of Spg035217 vs. NCBI nr
Match: XP_022142327.1 (uncharacterized protein LOC111012468 [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-19
Identity = 64/125 (51.20%), Postives = 83/125 (66.40%), Query Frame = 0

Query: 10  SSSSSTTQPTSQSIIEQYENPYFLQR-----LVLVSDPLTESNYTSWSQAMVISLTVKSK 69
           SSSS+T    + SI+E Y NPY+L       LVLVSD L E+NYTSWS++M+I+LTVK+K
Sbjct: 22  SSSSTTHGVATTSILENYSNPYYLHHSDNTSLVLVSDLLNENNYTSWSRSMIIALTVKNK 81

Query: 70  ---MDNELK-------HSWIICNEFVTASILNSLSKEISTSVNFAKTAREIWLDLQQRSS 120
              +D  +        +SW ICN  V A +LNSLSKEIS SV F+ +AR+IWLDLQ+R  
Sbjct: 82  IGFVDGSISRPSGAQINSWKICNNVVIAWLLNSLSKEISASVLFSDSARDIWLDLQERYQ 141

BLAST of Spg035217 vs. NCBI nr
Match: XP_038887186.1 (uncharacterized protein LOC120077373 [Benincasa hispida])

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-19
Identity = 64/125 (51.20%), Postives = 78/125 (62.40%), Query Frame = 0

Query: 10  SSSSSTTQPTSQSIIEQYENPYFLQ-----RLVLVSDPLTESNYTSWSQAMVISLTVKSK 69
           S+S    + +  S +EQY+NPYFL       LVLVS+ LTESNY SWSQAM I LTVK+K
Sbjct: 13  SNSMENVRASLSSFLEQYQNPYFLHPSDSTSLVLVSNLLTESNYDSWSQAMKIGLTVKNK 72

Query: 70  M----------DNELKHSWIICNEFVTASILNSLSKEISTSVNFAKTAREIWLDLQQRSS 120
           +            EL  SWII N  VT  ILNSLSKEI  S+NF+ +A+EIW DLQ+R  
Sbjct: 73  LGFINGEIPRPSGELLSSWIIYNGIVTTWILNSLSKEIFASINFSDSAQEIWADLQERYQ 132

BLAST of Spg035217 vs. ExPASy TrEMBL
Match: A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 0

Query: 12  SSSTTQPTSQSIIEQYENPYFLQR-----LVLVSDPLTESNYTSWSQAMVISLTVKSKM- 71
           ++ST+   +   IEQY NPYFL       LVLVSDPLT  NYTSWS++M+I+LTVK+K+ 
Sbjct: 9   TASTSTIIALIAIEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVG 68

Query: 72  ---------DNELKHSWIICNEFVTASILNSLSKEISTSVNFAKTAREIWLDLQQRSSAE 120
                      +L HSWIICN  V + ILNSLSKEIS S+ F+ +AREIWLDL++R   +
Sbjct: 69  FVDGSIVRPTGDLLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLDLKERFEKQ 128

BLAST of Spg035217 vs. ExPASy TrEMBL
Match: A0A6J1CMF8 (uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012468 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.9e-20
Identity = 64/125 (51.20%), Postives = 83/125 (66.40%), Query Frame = 0

Query: 10  SSSSSTTQPTSQSIIEQYENPYFLQR-----LVLVSDPLTESNYTSWSQAMVISLTVKSK 69
           SSSS+T    + SI+E Y NPY+L       LVLVSD L E+NYTSWS++M+I+LTVK+K
Sbjct: 22  SSSSTTHGVATTSILENYSNPYYLHHSDNTSLVLVSDLLNENNYTSWSRSMIIALTVKNK 81

Query: 70  ---MDNELK-------HSWIICNEFVTASILNSLSKEISTSVNFAKTAREIWLDLQQRSS 120
              +D  +        +SW ICN  V A +LNSLSKEIS SV F+ +AR+IWLDLQ+R  
Sbjct: 82  IGFVDGSISRPSGAQINSWKICNNVVIAWLLNSLSKEISASVLFSDSARDIWLDLQERYQ 141

BLAST of Spg035217 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.9e-18
Identity = 62/135 (45.93%), Postives = 85/135 (62.96%), Query Frame = 0

Query: 1   MDTNPPVNPSSSSSTTQPTSQSIIEQYENPYFLQR-----LVLVSDPLTESNYTSWSQAM 60
           M+ +  +NP++      P +  ++EQ+ NPYFL       LVLVSD LT+ NYTSWS+++
Sbjct: 1   MEEDDSLNPTAPGFI--PMNPIVVEQHANPYFLHHSDNTSLVLVSDLLTDENYTSWSRSI 60

Query: 61  VISLTVKSKM-----------DNELKHSWIICNEFVTASILNSLSKEISTSVNFAKTARE 120
           VI+LTVK+K+           D  L HSWIICN  V + I NSLSK+IS SV F+ +A E
Sbjct: 61  VIALTVKNKIGFVDGSISRPTDGRL-HSWIICNNVVISWIFNSLSKKISASVLFSDSAHE 120

BLAST of Spg035217 vs. ExPASy TrEMBL
Match: A0A6J1DKR8 (uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021831 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.6e-15
Identity = 57/138 (41.30%), Postives = 83/138 (60.14%), Query Frame = 0

Query: 1   MDTNPPVNP-----------SSSSSTTQPTSQSIIEQYENPYFLQ-----RLVLVSDPLT 60
           M T PP +P             SSS    +S S ++   NPY+L       LVLV+ PLT
Sbjct: 1   MPTTPPSSPVRPIDPIAPVLDDSSSPNSSSSVSGVDSVLNPYYLHHTDNTELVLVTQPLT 60

Query: 61  ESNYTSWSQAMVISLTVKSKMD----------NELKHSWIICNEFVTASILNSLSKEIST 113
           E NY+SWS++M+I+L++K+K+            EL  +WI  N  V A ILNS+SKEIS+
Sbjct: 61  EENYSSWSRSMLIALSIKNKLGFIDGSISRPIGELLPAWIHNNHVVIAWILNSVSKEISS 120

BLAST of Spg035217 vs. ExPASy TrEMBL
Match: A0A5J5BKC2 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_021321 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 56/127 (44.09%), Postives = 76/127 (59.84%), Query Frame = 0

Query: 11  SSSSTTQPTSQSIIEQYENPYFLQ-----RLVLVSDPLTESNYTSWSQAMVISLTVKSKM 70
           S+S     +++S IE+  NPY+L      R +LVS  LT  NYT+WS+AM+I+L+VK+K+
Sbjct: 10  SNSGERTNSNRSAIEEPSNPYYLHHSDSLRQMLVSQQLTGENYTNWSRAMLIALSVKNKL 69

Query: 71  -------------DNELKHSWIICNEFVTASILNSLSKEISTSVNFAKTAREIWLDLQQR 120
                         N L +SWI  N  V + ILNS+SKEIS S+ FA +AREIWLDL+ R
Sbjct: 70  GFVDGSILEPQGTGNNLLNSWIRNNNIVISWILNSVSKEISASIIFAASAREIWLDLRDR 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038875043.12.0e-2152.00uncharacterized protein LOC120067569 [Benincasa hispida][more]
XP_022152756.12.6e-2152.03uncharacterized protein LOC111020399 [Momordica charantia][more]
XP_038874906.17.5e-2150.78uncharacterized protein LOC120067409 [Benincasa hispida][more]
XP_022142327.11.4e-1951.20uncharacterized protein LOC111012468 [Momordica charantia][more]
XP_038887186.12.4e-1951.20uncharacterized protein LOC120077373 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DIP81.3e-2152.03uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1CMF86.9e-2051.20uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A6J1DNP74.9e-1845.93uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DKR86.6e-1541.30uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A5J5BKC21.1e-1444.09Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_021321 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 36..66
e-value: 2.8E-8
score: 33.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR37610FAMILY NOT NAMEDcoord: 12..116
NoneNo IPR availablePANTHERPTHR37610:SF55SUBFAMILY NOT NAMEDcoord: 12..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035217.1Spg035217.1mRNA