Spg035204 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035204
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionserine/arginine repetitive matrix protein 1
Locationscaffold4: 23759904 .. 23760413 (+)
RNA-Seq ExpressionSpg035204
SyntenySpg035204
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTTCCGAATACCCAATTTCGCGGTAGCCACAAATTCCAAATCATGTGGGCTGCCTCCCCAAACCCACCGAGCCCGTTCAGCCGCCGCCTCCCGATCCCAACCAGGCCGGTCTCCGTCATCTACGCCAAGTCTCAGCCACCCAAAAGCGACGCCGACAACACCACACCAAGCGACAGTAGCAGCAGCATCAAAAGCTTTGGCCACAAAATTCTGTCAGCCGTGAACTCCCCAAACCCCAATCGGAAACAAACGACCCCAAAACAGGAATCGCAAATTAGTGGGTCCGATGTTCTGAGGGCACTGCAGAAGGCCGCTGCTGTGAAGGAGAAGAACAGGCCCCGACAAGTGAAAGAGAAGCAGAAGGTAGGCCCTTCCACTGAGGGGATCGACTCTCAGAACTCTGACATGAACCGTAGAGTGAGGCCTCTGAGAATCAACAGCGATTGGGGCTTGAGGCTCACCGAGTTGGAAAAACGCCTTCAGGACATTTCTGACATGGTTTGA

mRNA sequence

ATGAACCTTCCGAATACCCAATTTCGCGGTAGCCACAAATTCCAAATCATGTGGGCTGCCTCCCCAAACCCACCGAGCCCGTTCAGCCGCCGCCTCCCGATCCCAACCAGGCCGGTCTCCGTCATCTACGCCAAGTCTCAGCCACCCAAAAGCGACGCCGACAACACCACACCAAGCGACAGTAGCAGCAGCATCAAAAGCTTTGGCCACAAAATTCTGTCAGCCGTGAACTCCCCAAACCCCAATCGGAAACAAACGACCCCAAAACAGGAATCGCAAATTAGTGGGTCCGATGTTCTGAGGGCACTGCAGAAGGCCGCTGCTGTGAAGGAGAAGAACAGGCCCCGACAAGTGAAAGAGAAGCAGAAGGTAGGCCCTTCCACTGAGGGGATCGACTCTCAGAACTCTGACATGAACCGTAGAGTGAGGCCTCTGAGAATCAACAGCGATTGGGGCTTGAGGCTCACCGAGTTGGAAAAACGCCTTCAGGACATTTCTGACATGGTTTGA

Coding sequence (CDS)

ATGAACCTTCCGAATACCCAATTTCGCGGTAGCCACAAATTCCAAATCATGTGGGCTGCCTCCCCAAACCCACCGAGCCCGTTCAGCCGCCGCCTCCCGATCCCAACCAGGCCGGTCTCCGTCATCTACGCCAAGTCTCAGCCACCCAAAAGCGACGCCGACAACACCACACCAAGCGACAGTAGCAGCAGCATCAAAAGCTTTGGCCACAAAATTCTGTCAGCCGTGAACTCCCCAAACCCCAATCGGAAACAAACGACCCCAAAACAGGAATCGCAAATTAGTGGGTCCGATGTTCTGAGGGCACTGCAGAAGGCCGCTGCTGTGAAGGAGAAGAACAGGCCCCGACAAGTGAAAGAGAAGCAGAAGGTAGGCCCTTCCACTGAGGGGATCGACTCTCAGAACTCTGACATGAACCGTAGAGTGAGGCCTCTGAGAATCAACAGCGATTGGGGCTTGAGGCTCACCGAGTTGGAAAAACGCCTTCAGGACATTTCTGACATGGTTTGA

Protein sequence

MNLPNTQFRGSHKFQIMWAASPNPPSPFSRRLPIPTRPVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHKILSAVNSPNPNRKQTTPKQESQISGSDVLRALQKAAAVKEKNRPRQVKEKQKVGPSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV
Homology
BLAST of Spg035204 vs. NCBI nr
Match: XP_038906928.1 (uncharacterized protein LOC120092795 [Benincasa hispida])

HSP 1 Score: 188.0 bits (476), Expect = 6.9e-44
Identity = 112/168 (66.67%), Postives = 128/168 (76.19%), Query Frame = 0

Query: 17  MWAASPNPPSPFSRRLPI-----PTRPVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
           MWAAS   P+P   RLPI     PT PVS IYA+SQPPK+DA NTTP+D SSSIKSFGHK
Sbjct: 1   MWAASSTLPTPSCHRLPIITRPLPTPPVSAIYAESQPPKTDAGNTTPND-SSSIKSFGHK 60

Query: 77  ILSAVNSPNPNR-----KQTTPKQE-----SQISGSDVLRALQKAAAVKEKNRPRQVKEK 136
           ILSAVNSPNP        +TTPKQE     +QISGSD+LRALQKAAAVKEKNR RQVK K
Sbjct: 61  ILSAVNSPNPKSLNPKPNKTTPKQEAQPEAAQISGSDILRALQKAAAVKEKNRTRQVKGK 120

Query: 137 QKVGPSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
           +K GP+TEG    +S+MN RVRPL+I  DWGLRL++LEKRLQ+ S+ V
Sbjct: 121 KKEGPTTEG---SHSEMNHRVRPLKIKGDWGLRLSQLEKRLQEFSEPV 164

BLAST of Spg035204 vs. NCBI nr
Match: XP_023006674.1 (uncharacterized protein LOC111499329 [Cucurbita maxima])

HSP 1 Score: 187.2 bits (474), Expect = 1.2e-43
Identity = 112/164 (68.29%), Postives = 124/164 (75.61%), Query Frame = 0

Query: 17  MWAASPNPPSPFSRRLPIPTR-----PVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
           MWAA    PSP   RLP+PTR     PVS IYAK+QPP +DADN TP ++SSSIKSFGHK
Sbjct: 1   MWAAFSTSPSPSCCRLPLPTRPLPTPPVSAIYAKAQPPDTDADNATP-NNSSSIKSFGHK 60

Query: 77  ILSAVNSPNPNRKQTTPKQESQ-----ISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG- 136
           ILSA  S NP  +    KQESQ     ISG DVLRALQKAAAVKEKNR RQVKE++K G 
Sbjct: 61  ILSAAKSTNPKSRSPIRKQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQKKDGP 120

Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
           P TEG  S NS+MNRRVRPLRI +DWGLRLTELEKRLQ+IS+ V
Sbjct: 121 PPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163

BLAST of Spg035204 vs. NCBI nr
Match: XP_022959476.1 (uncharacterized protein LOC111460438 [Cucurbita moschata])

HSP 1 Score: 184.9 bits (468), Expect = 5.8e-43
Identity = 110/164 (67.07%), Postives = 124/164 (75.61%), Query Frame = 0

Query: 17  MWAASPNPPSPFSRRLPIPTR-----PVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
           MW A    PSP   RLP+PTR     PVS IYAK+QPP++DADN TP ++S+SIKSFGHK
Sbjct: 1   MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATP-NNSTSIKSFGHK 60

Query: 77  ILSAVNSPNPNRKQTTPKQES-----QISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG- 136
           ILSA NS NP  +    KQES     QISG DVLRALQKAAAVKEKNR RQ KE++K G 
Sbjct: 61  ILSAANSTNPKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGP 120

Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
           P TEG  S NS+MNRRVRPLRI +DWGLRLTELEKRLQ+IS+ V
Sbjct: 121 PPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163

BLAST of Spg035204 vs. NCBI nr
Match: XP_023547620.1 (uncharacterized protein LOC111806506 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 4.9e-42
Identity = 109/164 (66.46%), Postives = 125/164 (76.22%), Query Frame = 0

Query: 17  MWAASPNPPSPFSRRLPIPTR-----PVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
           MWAA    PSP   RLP+PTR     PVS IYAK+QPP++DADN TP ++SSSIKSFGHK
Sbjct: 1   MWAAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATP-NNSSSIKSFGHK 60

Query: 77  ILSAVNSPN-----PNRKQTTPKQESQISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG- 136
           ILSA NS N     P RKQ +  + +QISG DVLRALQKAAAVKEKNR RQ +E++K G 
Sbjct: 61  ILSAANSTNSKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRIRQGREQKKDGP 120

Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
           P TEG  S NS+MNRRVRPLRI +DWGLRL ELEKRLQ+IS+ V
Sbjct: 121 PPTEGSGSDNSEMNRRVRPLRIKNDWGLRLAELEKRLQEISETV 163

BLAST of Spg035204 vs. NCBI nr
Match: XP_008459744.1 (PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo] >KAA0039758.1 Chaperone ClpB [Cucumis melo var. makuwa] >TYK24738.1 Chaperone ClpB [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 3.9e-39
Identity = 103/162 (63.58%), Postives = 118/162 (72.84%), Query Frame = 0

Query: 17  MWAASPNPPSPFSRRLPI-----PTRPVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
           MWAAS   PSP  RRLPI     P  PVS+ YAKS PPK DA+NT P ++S +IKSFGHK
Sbjct: 1   MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKP-NNSGTIKSFGHK 60

Query: 77  ILSAVNSPNP-NRKQTTPKQES-----QISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG 136
           ILSAVNSP P +  QTTPK ES     QISGSDVLRALQKAAAVKEKNR +QVKEK+K  
Sbjct: 61  ILSAVNSPTPQSLNQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKKKKK 120

Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISD 168
                 +   S+MN RVRPL+I  DWGLRLT+LEKRL ++S+
Sbjct: 121 KEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSE 161

BLAST of Spg035204 vs. ExPASy TrEMBL
Match: A0A6J1L2U1 (uncharacterized protein LOC111499329 OS=Cucurbita maxima OX=3661 GN=LOC111499329 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.7e-44
Identity = 112/164 (68.29%), Postives = 124/164 (75.61%), Query Frame = 0

Query: 17  MWAASPNPPSPFSRRLPIPTR-----PVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
           MWAA    PSP   RLP+PTR     PVS IYAK+QPP +DADN TP ++SSSIKSFGHK
Sbjct: 1   MWAAFSTSPSPSCCRLPLPTRPLPTPPVSAIYAKAQPPDTDADNATP-NNSSSIKSFGHK 60

Query: 77  ILSAVNSPNPNRKQTTPKQESQ-----ISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG- 136
           ILSA  S NP  +    KQESQ     ISG DVLRALQKAAAVKEKNR RQVKE++K G 
Sbjct: 61  ILSAAKSTNPKSRSPIRKQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQKKDGP 120

Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
           P TEG  S NS+MNRRVRPLRI +DWGLRLTELEKRLQ+IS+ V
Sbjct: 121 PPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163

BLAST of Spg035204 vs. ExPASy TrEMBL
Match: A0A6J1H4Y8 (uncharacterized protein LOC111460438 OS=Cucurbita moschata OX=3662 GN=LOC111460438 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.8e-43
Identity = 110/164 (67.07%), Postives = 124/164 (75.61%), Query Frame = 0

Query: 17  MWAASPNPPSPFSRRLPIPTR-----PVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
           MW A    PSP   RLP+PTR     PVS IYAK+QPP++DADN TP ++S+SIKSFGHK
Sbjct: 1   MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATP-NNSTSIKSFGHK 60

Query: 77  ILSAVNSPNPNRKQTTPKQES-----QISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG- 136
           ILSA NS NP  +    KQES     QISG DVLRALQKAAAVKEKNR RQ KE++K G 
Sbjct: 61  ILSAANSTNPKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGP 120

Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
           P TEG  S NS+MNRRVRPLRI +DWGLRLTELEKRLQ+IS+ V
Sbjct: 121 PPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163

BLAST of Spg035204 vs. ExPASy TrEMBL
Match: A0A5D3DMB8 (Chaperone ClpB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002990 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.9e-39
Identity = 103/162 (63.58%), Postives = 118/162 (72.84%), Query Frame = 0

Query: 17  MWAASPNPPSPFSRRLPI-----PTRPVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
           MWAAS   PSP  RRLPI     P  PVS+ YAKS PPK DA+NT P ++S +IKSFGHK
Sbjct: 1   MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKP-NNSGTIKSFGHK 60

Query: 77  ILSAVNSPNP-NRKQTTPKQES-----QISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG 136
           ILSAVNSP P +  QTTPK ES     QISGSDVLRALQKAAAVKEKNR +QVKEK+K  
Sbjct: 61  ILSAVNSPTPQSLNQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKKKKK 120

Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISD 168
                 +   S+MN RVRPL+I  DWGLRLT+LEKRL ++S+
Sbjct: 121 KEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSE 161

BLAST of Spg035204 vs. ExPASy TrEMBL
Match: A0A1S3CAW4 (uncharacterized protein LOC103498786 OS=Cucumis melo OX=3656 GN=LOC103498786 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.9e-39
Identity = 103/162 (63.58%), Postives = 118/162 (72.84%), Query Frame = 0

Query: 17  MWAASPNPPSPFSRRLPI-----PTRPVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
           MWAAS   PSP  RRLPI     P  PVS+ YAKS PPK DA+NT P ++S +IKSFGHK
Sbjct: 1   MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKP-NNSGTIKSFGHK 60

Query: 77  ILSAVNSPNP-NRKQTTPKQES-----QISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG 136
           ILSAVNSP P +  QTTPK ES     QISGSDVLRALQKAAAVKEKNR +QVKEK+K  
Sbjct: 61  ILSAVNSPTPQSLNQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKKKKK 120

Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISD 168
                 +   S+MN RVRPL+I  DWGLRLT+LEKRL ++S+
Sbjct: 121 KEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSE 161

BLAST of Spg035204 vs. ExPASy TrEMBL
Match: A0A6J1DX20 (serine/arginine repetitive matrix protein 1 OS=Momordica charantia OX=3673 GN=LOC111025238 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 7.9e-38
Identity = 101/163 (61.96%), Postives = 120/163 (73.62%), Query Frame = 0

Query: 17  MWAASPNPPSPFSRRLPIPTR--PVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHKILS 76
           MWAA+   PSP  RR P+PT+  P+  IYAKS PPK+ A++ TP D++ S+KS GH ILS
Sbjct: 1   MWAATTASPSPSCRRRPLPTKPPPLPAIYAKSPPPKTHAESATP-DNNRSVKSLGHTILS 60

Query: 77  AVNSPNPNRKQTTPKQES-------QISGSDVLRALQKAAAVKEKNRPRQVKE-KQKVGP 136
           AV SP PN+KQ TPKQES       Q+ GSDVL ALQKAAA KEKNR R+V + K+K GP
Sbjct: 61  AVKSPLPNQKQGTPKQESEAEAEAGQVRGSDVLWALQKAAAAKEKNRSRRVNDKKKKEGP 120

Query: 137 STEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
           ST   + QNS +NR VRPLRI SDWG RL+ELEKRLQ+ISD V
Sbjct: 121 ST-CAEPQNSGINRGVRPLRIGSDWGFRLSELEKRLQEISDTV 161

BLAST of Spg035204 vs. TAIR 10
Match: AT2G46735.1 (unknown protein; Has 14 Blast hits to 14 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 9.0e-10
Identity = 64/171 (37.43%), Postives = 79/171 (46.20%), Query Frame = 0

Query: 17  MWAASPNP-PSPFSRRLPIPTRPVSVIYAKSQPPKSDADN--------TTPSDSSSSIKS 76
           MW   P   P  F  R   PT   SV Y  SQPP  + D          T S +S S+  
Sbjct: 1   MWTVKPAAMPVQFHMR---PTVATSVAY--SQPPPHNYDGIHRRFINVPTKSQTSESVGG 60

Query: 77  FGHKILSAVNSPNPNRKQTTPKQESQISGSDVLRALQKAAA---------VKEKNRPRQV 136
            G +IL      NP  ++  PK E++ISGSDVL A+Q+A A          K KNR   V
Sbjct: 61  LGQQILLRTVDSNP--RKPIPK-ETEISGSDVLWAIQRATAQRKRTNAGKKKTKNRLSGV 120

Query: 137 KEKQKVGPST--EGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISD 168
           +     G  T   G+D  N      V PLRI SDWG RL E EK L++  +
Sbjct: 121 ELSSSAGEPTGDNGVDYSN------VTPLRIKSDWGHRLEEFEKLLKEFQN 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038906928.16.9e-4466.67uncharacterized protein LOC120092795 [Benincasa hispida][more]
XP_023006674.11.2e-4368.29uncharacterized protein LOC111499329 [Cucurbita maxima][more]
XP_022959476.15.8e-4367.07uncharacterized protein LOC111460438 [Cucurbita moschata][more]
XP_023547620.14.9e-4266.46uncharacterized protein LOC111806506 [Cucurbita pepo subsp. pepo][more]
XP_008459744.13.9e-3963.58PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo] >KAA0039758.1 Cha... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1L2U15.7e-4468.29uncharacterized protein LOC111499329 OS=Cucurbita maxima OX=3661 GN=LOC111499329... [more]
A0A6J1H4Y82.8e-4367.07uncharacterized protein LOC111460438 OS=Cucurbita moschata OX=3662 GN=LOC1114604... [more]
A0A5D3DMB81.9e-3963.58Chaperone ClpB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00299... [more]
A0A1S3CAW41.9e-3963.58uncharacterized protein LOC103498786 OS=Cucumis melo OX=3656 GN=LOC103498786 PE=... [more]
A0A6J1DX207.9e-3861.96serine/arginine repetitive matrix protein 1 OS=Momordica charantia OX=3673 GN=LO... [more]
Match NameE-valueIdentityDescription
AT2G46735.19.0e-1037.43unknown protein; Has 14 Blast hits to 14 proteins in 8 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..126
NoneNo IPR availablePANTHERPTHR37728BNAA04G26730D PROTEINcoord: 17..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035204.1Spg035204.1mRNA