Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTTCCGAATACCCAATTTCGCGGTAGCCACAAATTCCAAATCATGTGGGCTGCCTCCCCAAACCCACCGAGCCCGTTCAGCCGCCGCCTCCCGATCCCAACCAGGCCGGTCTCCGTCATCTACGCCAAGTCTCAGCCACCCAAAAGCGACGCCGACAACACCACACCAAGCGACAGTAGCAGCAGCATCAAAAGCTTTGGCCACAAAATTCTGTCAGCCGTGAACTCCCCAAACCCCAATCGGAAACAAACGACCCCAAAACAGGAATCGCAAATTAGTGGGTCCGATGTTCTGAGGGCACTGCAGAAGGCCGCTGCTGTGAAGGAGAAGAACAGGCCCCGACAAGTGAAAGAGAAGCAGAAGGTAGGCCCTTCCACTGAGGGGATCGACTCTCAGAACTCTGACATGAACCGTAGAGTGAGGCCTCTGAGAATCAACAGCGATTGGGGCTTGAGGCTCACCGAGTTGGAAAAACGCCTTCAGGACATTTCTGACATGGTTTGA
mRNA sequence
ATGAACCTTCCGAATACCCAATTTCGCGGTAGCCACAAATTCCAAATCATGTGGGCTGCCTCCCCAAACCCACCGAGCCCGTTCAGCCGCCGCCTCCCGATCCCAACCAGGCCGGTCTCCGTCATCTACGCCAAGTCTCAGCCACCCAAAAGCGACGCCGACAACACCACACCAAGCGACAGTAGCAGCAGCATCAAAAGCTTTGGCCACAAAATTCTGTCAGCCGTGAACTCCCCAAACCCCAATCGGAAACAAACGACCCCAAAACAGGAATCGCAAATTAGTGGGTCCGATGTTCTGAGGGCACTGCAGAAGGCCGCTGCTGTGAAGGAGAAGAACAGGCCCCGACAAGTGAAAGAGAAGCAGAAGGTAGGCCCTTCCACTGAGGGGATCGACTCTCAGAACTCTGACATGAACCGTAGAGTGAGGCCTCTGAGAATCAACAGCGATTGGGGCTTGAGGCTCACCGAGTTGGAAAAACGCCTTCAGGACATTTCTGACATGGTTTGA
Coding sequence (CDS)
ATGAACCTTCCGAATACCCAATTTCGCGGTAGCCACAAATTCCAAATCATGTGGGCTGCCTCCCCAAACCCACCGAGCCCGTTCAGCCGCCGCCTCCCGATCCCAACCAGGCCGGTCTCCGTCATCTACGCCAAGTCTCAGCCACCCAAAAGCGACGCCGACAACACCACACCAAGCGACAGTAGCAGCAGCATCAAAAGCTTTGGCCACAAAATTCTGTCAGCCGTGAACTCCCCAAACCCCAATCGGAAACAAACGACCCCAAAACAGGAATCGCAAATTAGTGGGTCCGATGTTCTGAGGGCACTGCAGAAGGCCGCTGCTGTGAAGGAGAAGAACAGGCCCCGACAAGTGAAAGAGAAGCAGAAGGTAGGCCCTTCCACTGAGGGGATCGACTCTCAGAACTCTGACATGAACCGTAGAGTGAGGCCTCTGAGAATCAACAGCGATTGGGGCTTGAGGCTCACCGAGTTGGAAAAACGCCTTCAGGACATTTCTGACATGGTTTGA
Protein sequence
MNLPNTQFRGSHKFQIMWAASPNPPSPFSRRLPIPTRPVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHKILSAVNSPNPNRKQTTPKQESQISGSDVLRALQKAAAVKEKNRPRQVKEKQKVGPSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV
Homology
BLAST of Spg035204 vs. NCBI nr
Match:
XP_038906928.1 (uncharacterized protein LOC120092795 [Benincasa hispida])
HSP 1 Score: 188.0 bits (476), Expect = 6.9e-44
Identity = 112/168 (66.67%), Postives = 128/168 (76.19%), Query Frame = 0
Query: 17 MWAASPNPPSPFSRRLPI-----PTRPVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
MWAAS P+P RLPI PT PVS IYA+SQPPK+DA NTTP+D SSSIKSFGHK
Sbjct: 1 MWAASSTLPTPSCHRLPIITRPLPTPPVSAIYAESQPPKTDAGNTTPND-SSSIKSFGHK 60
Query: 77 ILSAVNSPNPNR-----KQTTPKQE-----SQISGSDVLRALQKAAAVKEKNRPRQVKEK 136
ILSAVNSPNP +TTPKQE +QISGSD+LRALQKAAAVKEKNR RQVK K
Sbjct: 61 ILSAVNSPNPKSLNPKPNKTTPKQEAQPEAAQISGSDILRALQKAAAVKEKNRTRQVKGK 120
Query: 137 QKVGPSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
+K GP+TEG +S+MN RVRPL+I DWGLRL++LEKRLQ+ S+ V
Sbjct: 121 KKEGPTTEG---SHSEMNHRVRPLKIKGDWGLRLSQLEKRLQEFSEPV 164
BLAST of Spg035204 vs. NCBI nr
Match:
XP_023006674.1 (uncharacterized protein LOC111499329 [Cucurbita maxima])
HSP 1 Score: 187.2 bits (474), Expect = 1.2e-43
Identity = 112/164 (68.29%), Postives = 124/164 (75.61%), Query Frame = 0
Query: 17 MWAASPNPPSPFSRRLPIPTR-----PVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
MWAA PSP RLP+PTR PVS IYAK+QPP +DADN TP ++SSSIKSFGHK
Sbjct: 1 MWAAFSTSPSPSCCRLPLPTRPLPTPPVSAIYAKAQPPDTDADNATP-NNSSSIKSFGHK 60
Query: 77 ILSAVNSPNPNRKQTTPKQESQ-----ISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG- 136
ILSA S NP + KQESQ ISG DVLRALQKAAAVKEKNR RQVKE++K G
Sbjct: 61 ILSAAKSTNPKSRSPIRKQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQKKDGP 120
Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
P TEG S NS+MNRRVRPLRI +DWGLRLTELEKRLQ+IS+ V
Sbjct: 121 PPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163
BLAST of Spg035204 vs. NCBI nr
Match:
XP_022959476.1 (uncharacterized protein LOC111460438 [Cucurbita moschata])
HSP 1 Score: 184.9 bits (468), Expect = 5.8e-43
Identity = 110/164 (67.07%), Postives = 124/164 (75.61%), Query Frame = 0
Query: 17 MWAASPNPPSPFSRRLPIPTR-----PVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
MW A PSP RLP+PTR PVS IYAK+QPP++DADN TP ++S+SIKSFGHK
Sbjct: 1 MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATP-NNSTSIKSFGHK 60
Query: 77 ILSAVNSPNPNRKQTTPKQES-----QISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG- 136
ILSA NS NP + KQES QISG DVLRALQKAAAVKEKNR RQ KE++K G
Sbjct: 61 ILSAANSTNPKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGP 120
Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
P TEG S NS+MNRRVRPLRI +DWGLRLTELEKRLQ+IS+ V
Sbjct: 121 PPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163
BLAST of Spg035204 vs. NCBI nr
Match:
XP_023547620.1 (uncharacterized protein LOC111806506 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 181.8 bits (460), Expect = 4.9e-42
Identity = 109/164 (66.46%), Postives = 125/164 (76.22%), Query Frame = 0
Query: 17 MWAASPNPPSPFSRRLPIPTR-----PVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
MWAA PSP RLP+PTR PVS IYAK+QPP++DADN TP ++SSSIKSFGHK
Sbjct: 1 MWAAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATP-NNSSSIKSFGHK 60
Query: 77 ILSAVNSPN-----PNRKQTTPKQESQISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG- 136
ILSA NS N P RKQ + + +QISG DVLRALQKAAAVKEKNR RQ +E++K G
Sbjct: 61 ILSAANSTNSKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRIRQGREQKKDGP 120
Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
P TEG S NS+MNRRVRPLRI +DWGLRL ELEKRLQ+IS+ V
Sbjct: 121 PPTEGSGSDNSEMNRRVRPLRIKNDWGLRLAELEKRLQEISETV 163
BLAST of Spg035204 vs. NCBI nr
Match:
XP_008459744.1 (PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo] >KAA0039758.1 Chaperone ClpB [Cucumis melo var. makuwa] >TYK24738.1 Chaperone ClpB [Cucumis melo var. makuwa])
HSP 1 Score: 172.2 bits (435), Expect = 3.9e-39
Identity = 103/162 (63.58%), Postives = 118/162 (72.84%), Query Frame = 0
Query: 17 MWAASPNPPSPFSRRLPI-----PTRPVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
MWAAS PSP RRLPI P PVS+ YAKS PPK DA+NT P ++S +IKSFGHK
Sbjct: 1 MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKP-NNSGTIKSFGHK 60
Query: 77 ILSAVNSPNP-NRKQTTPKQES-----QISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG 136
ILSAVNSP P + QTTPK ES QISGSDVLRALQKAAAVKEKNR +QVKEK+K
Sbjct: 61 ILSAVNSPTPQSLNQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKKKKK 120
Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISD 168
+ S+MN RVRPL+I DWGLRLT+LEKRL ++S+
Sbjct: 121 KEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSE 161
BLAST of Spg035204 vs. ExPASy TrEMBL
Match:
A0A6J1L2U1 (uncharacterized protein LOC111499329 OS=Cucurbita maxima OX=3661 GN=LOC111499329 PE=4 SV=1)
HSP 1 Score: 187.2 bits (474), Expect = 5.7e-44
Identity = 112/164 (68.29%), Postives = 124/164 (75.61%), Query Frame = 0
Query: 17 MWAASPNPPSPFSRRLPIPTR-----PVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
MWAA PSP RLP+PTR PVS IYAK+QPP +DADN TP ++SSSIKSFGHK
Sbjct: 1 MWAAFSTSPSPSCCRLPLPTRPLPTPPVSAIYAKAQPPDTDADNATP-NNSSSIKSFGHK 60
Query: 77 ILSAVNSPNPNRKQTTPKQESQ-----ISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG- 136
ILSA S NP + KQESQ ISG DVLRALQKAAAVKEKNR RQVKE++K G
Sbjct: 61 ILSAAKSTNPKSRSPIRKQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQKKDGP 120
Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
P TEG S NS+MNRRVRPLRI +DWGLRLTELEKRLQ+IS+ V
Sbjct: 121 PPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163
BLAST of Spg035204 vs. ExPASy TrEMBL
Match:
A0A6J1H4Y8 (uncharacterized protein LOC111460438 OS=Cucurbita moschata OX=3662 GN=LOC111460438 PE=4 SV=1)
HSP 1 Score: 184.9 bits (468), Expect = 2.8e-43
Identity = 110/164 (67.07%), Postives = 124/164 (75.61%), Query Frame = 0
Query: 17 MWAASPNPPSPFSRRLPIPTR-----PVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
MW A PSP RLP+PTR PVS IYAK+QPP++DADN TP ++S+SIKSFGHK
Sbjct: 1 MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATP-NNSTSIKSFGHK 60
Query: 77 ILSAVNSPNPNRKQTTPKQES-----QISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG- 136
ILSA NS NP + KQES QISG DVLRALQKAAAVKEKNR RQ KE++K G
Sbjct: 61 ILSAANSTNPKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGP 120
Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
P TEG S NS+MNRRVRPLRI +DWGLRLTELEKRLQ+IS+ V
Sbjct: 121 PPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163
BLAST of Spg035204 vs. ExPASy TrEMBL
Match:
A0A5D3DMB8 (Chaperone ClpB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002990 PE=4 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 1.9e-39
Identity = 103/162 (63.58%), Postives = 118/162 (72.84%), Query Frame = 0
Query: 17 MWAASPNPPSPFSRRLPI-----PTRPVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
MWAAS PSP RRLPI P PVS+ YAKS PPK DA+NT P ++S +IKSFGHK
Sbjct: 1 MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKP-NNSGTIKSFGHK 60
Query: 77 ILSAVNSPNP-NRKQTTPKQES-----QISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG 136
ILSAVNSP P + QTTPK ES QISGSDVLRALQKAAAVKEKNR +QVKEK+K
Sbjct: 61 ILSAVNSPTPQSLNQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKKKKK 120
Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISD 168
+ S+MN RVRPL+I DWGLRLT+LEKRL ++S+
Sbjct: 121 KEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSE 161
BLAST of Spg035204 vs. ExPASy TrEMBL
Match:
A0A1S3CAW4 (uncharacterized protein LOC103498786 OS=Cucumis melo OX=3656 GN=LOC103498786 PE=4 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 1.9e-39
Identity = 103/162 (63.58%), Postives = 118/162 (72.84%), Query Frame = 0
Query: 17 MWAASPNPPSPFSRRLPI-----PTRPVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHK 76
MWAAS PSP RRLPI P PVS+ YAKS PPK DA+NT P ++S +IKSFGHK
Sbjct: 1 MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKP-NNSGTIKSFGHK 60
Query: 77 ILSAVNSPNP-NRKQTTPKQES-----QISGSDVLRALQKAAAVKEKNRPRQVKEKQKVG 136
ILSAVNSP P + QTTPK ES QISGSDVLRALQKAAAVKEKNR +QVKEK+K
Sbjct: 61 ILSAVNSPTPQSLNQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKKKKK 120
Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISD 168
+ S+MN RVRPL+I DWGLRLT+LEKRL ++S+
Sbjct: 121 KEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSE 161
BLAST of Spg035204 vs. ExPASy TrEMBL
Match:
A0A6J1DX20 (serine/arginine repetitive matrix protein 1 OS=Momordica charantia OX=3673 GN=LOC111025238 PE=4 SV=1)
HSP 1 Score: 166.8 bits (421), Expect = 7.9e-38
Identity = 101/163 (61.96%), Postives = 120/163 (73.62%), Query Frame = 0
Query: 17 MWAASPNPPSPFSRRLPIPTR--PVSVIYAKSQPPKSDADNTTPSDSSSSIKSFGHKILS 76
MWAA+ PSP RR P+PT+ P+ IYAKS PPK+ A++ TP D++ S+KS GH ILS
Sbjct: 1 MWAATTASPSPSCRRRPLPTKPPPLPAIYAKSPPPKTHAESATP-DNNRSVKSLGHTILS 60
Query: 77 AVNSPNPNRKQTTPKQES-------QISGSDVLRALQKAAAVKEKNRPRQVKE-KQKVGP 136
AV SP PN+KQ TPKQES Q+ GSDVL ALQKAAA KEKNR R+V + K+K GP
Sbjct: 61 AVKSPLPNQKQGTPKQESEAEAEAGQVRGSDVLWALQKAAAAKEKNRSRRVNDKKKKEGP 120
Query: 137 STEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
ST + QNS +NR VRPLRI SDWG RL+ELEKRLQ+ISD V
Sbjct: 121 ST-CAEPQNSGINRGVRPLRIGSDWGFRLSELEKRLQEISDTV 161
BLAST of Spg035204 vs. TAIR 10
Match:
AT2G46735.1 (unknown protein; Has 14 Blast hits to 14 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 61.2 bits (147), Expect = 9.0e-10
Identity = 64/171 (37.43%), Postives = 79/171 (46.20%), Query Frame = 0
Query: 17 MWAASPNP-PSPFSRRLPIPTRPVSVIYAKSQPPKSDADN--------TTPSDSSSSIKS 76
MW P P F R PT SV Y SQPP + D T S +S S+
Sbjct: 1 MWTVKPAAMPVQFHMR---PTVATSVAY--SQPPPHNYDGIHRRFINVPTKSQTSESVGG 60
Query: 77 FGHKILSAVNSPNPNRKQTTPKQESQISGSDVLRALQKAAA---------VKEKNRPRQV 136
G +IL NP ++ PK E++ISGSDVL A+Q+A A K KNR V
Sbjct: 61 LGQQILLRTVDSNP--RKPIPK-ETEISGSDVLWAIQRATAQRKRTNAGKKKTKNRLSGV 120
Query: 137 KEKQKVGPST--EGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISD 168
+ G T G+D N V PLRI SDWG RL E EK L++ +
Sbjct: 121 ELSSSAGEPTGDNGVDYSN------VTPLRIKSDWGHRLEEFEKLLKEFQN 157
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038906928.1 | 6.9e-44 | 66.67 | uncharacterized protein LOC120092795 [Benincasa hispida] | [more] |
XP_023006674.1 | 1.2e-43 | 68.29 | uncharacterized protein LOC111499329 [Cucurbita maxima] | [more] |
XP_022959476.1 | 5.8e-43 | 67.07 | uncharacterized protein LOC111460438 [Cucurbita moschata] | [more] |
XP_023547620.1 | 4.9e-42 | 66.46 | uncharacterized protein LOC111806506 [Cucurbita pepo subsp. pepo] | [more] |
XP_008459744.1 | 3.9e-39 | 63.58 | PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo] >KAA0039758.1 Cha... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1L2U1 | 5.7e-44 | 68.29 | uncharacterized protein LOC111499329 OS=Cucurbita maxima OX=3661 GN=LOC111499329... | [more] |
A0A6J1H4Y8 | 2.8e-43 | 67.07 | uncharacterized protein LOC111460438 OS=Cucurbita moschata OX=3662 GN=LOC1114604... | [more] |
A0A5D3DMB8 | 1.9e-39 | 63.58 | Chaperone ClpB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00299... | [more] |
A0A1S3CAW4 | 1.9e-39 | 63.58 | uncharacterized protein LOC103498786 OS=Cucumis melo OX=3656 GN=LOC103498786 PE=... | [more] |
A0A6J1DX20 | 7.9e-38 | 61.96 | serine/arginine repetitive matrix protein 1 OS=Momordica charantia OX=3673 GN=LO... | [more] |
Match Name | E-value | Identity | Description | |
AT2G46735.1 | 9.0e-10 | 37.43 | unknown protein; Has 14 Blast hits to 14 proteins in 8 species: Archae - 0; Bact... | [more] |