Spg035192 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035192
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDBD_Tnp_Mut domain-containing protein
Locationscaffold4: 23893390 .. 23893843 (+)
RNA-Seq ExpressionSpg035192
SyntenySpg035192
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAGAGTCAAAATGTAATTTGGATTCATGAAGATAAAGATGTAGCTTGGTTTTTGACTTTAGTGAAGGATCAAAGTACAAAACACCCTTTGGGTGCTCATGTTGATATGGTTTTGGGAAGGTCATCTAGTGCTATTGTTGGATATGAGAATTTGTCGTCTGTTGATTCTTCCTCCAGTAATGTTGATTTTCAAGTTATTACTGATGTTCATTTTGATGGGGATTTAAAGGAGAATGATGTTTTTGGAAGTAAGAAAGTTTTGTCAAAGTGTTTTTACTTCATGGCTGTCAAGAAAAATTTTGAATTTAAGACTTTAAGATCAAATTCAAAATCACTTGAGTTTCAATGTGTTCCAGATGGTTGCCAATGGTTTGTTAGGGCATCTCGATATAAAGAGAGTGAATTGTGGATGCTTAGGAAGTATGTATCTAATCACGATTGCTCTATGA

mRNA sequence

ATGAATGAGAGTCAAAATGTAATTTGGATTCATGAAGATAAAGATGTAGCTTGGTTTTTGACTTTAGTGAAGGATCAAAGTACAAAACACCCTTTGGGTGCTCATGTTGATATGGTTTTGGGAAGGTCATCTAGTGCTATTGTTGGATATGAGAATTTGTCGTCTGTTGATTCTTCCTCCAGTAATGTTGATTTTCAAGTTATTACTGATGTTCATTTTGATGGGGATTTAAAGGAGAATGATGTTTTTGGAAGGCATCTCGATATAAAGAGAGTGAATTGTGGATGCTTAGGAAGTATGTATCTAATCACGATTGCTCTATGA

Coding sequence (CDS)

ATGAATGAGAGTCAAAATGTAATTTGGATTCATGAAGATAAAGATGTAGCTTGGTTTTTGACTTTAGTGAAGGATCAAAGTACAAAACACCCTTTGGGTGCTCATGTTGATATGGTTTTGGGAAGGTCATCTAGTGCTATTGTTGGATATGAGAATTTGTCGTCTGTTGATTCTTCCTCCAGTAATGTTGATTTTCAAGTTATTACTGATGTTCATTTTGATGGGGATTTAAAGGAGAATGATGTTTTTGGAAGGCATCTCGATATAAAGAGAGTGAATTGTGGATGCTTAGGAAGTATGTATCTAATCACGATTGCTCTATGA

Protein sequence

MNESQNVIWIHEDKDVAWFLTLVKDQSTKHPLGAHVDMVLGRSSSAIVGYENLSSVDSSSSNVDFQVITDVHFDGDLKENDVFGRHLDIKRVNCGCLGSMYLITIAL
Homology
[Close]
BLAST of Spg035192 vs. NCBI nr
Match: XP_038907134.1 (uncharacterized protein LOC120092945 [Benincasa hispida])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 50/88 (56.82%), Postives = 60/88 (68.18%), Query Frame = 0 

Query: 1   MNESQNVIWIHEDKDVAWFLTLVKDQSTKHPLGAHVDMVLGRSSSAIVGYE---NLSSVD 60
           MN+ QN++ IHEDKDVAWFLTLVK+QST+HPL AHV  +    SS++V  E    LS V 
Sbjct: 64  MNKVQNIVEIHEDKDVAWFLTLVKEQSTRHPLVAHVTSMCLEGSSSVVSSEAENYLSIVP 123

Query: 61  SSSSNV--DFQVITDVHFDGDLKENDVF 84
            S   +  DFQVI D+H   DLKE DVF
Sbjct: 124 YSMPMIDDDFQVIMDIHIARDLKEKDVF 151

[Close]
BLAST of Spg035192 vs. NCBI nr
Match: XP_038891569.1 (uncharacterized protein LOC120080959 [Benincasa hispida])

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 0 

Query: 1   MNESQNVIWIHEDKDVAWFLTLVKDQSTKHPLGAHVDMVLGRSSSAIV--GYEN-LSSVD 60
           MNE QNV+ I EDKD+AWFL LVK+ + +HPL AH        SS +V  G EN LS+V 
Sbjct: 33  MNEVQNVVQIREDKDIAWFLALVKEHNRRHPLVAHASSSCLEESSNVVSSGAENYLSTVP 92

Query: 61  SSSSNV---DFQVITDVHFDGDLKENDVFGRHLDIKRVNCGCLGSMYLITI 106
           SS   +   DFQVI D+H   DLKE DVF      K +   C    YLI +
Sbjct: 93  SSKPMIDDGDFQVIMDIHIPRDLKEKDVFAS----KEILSNC---FYLIAV 136

[Close]
BLAST of Spg035192 vs. NCBI nr
Match: TYK22454.1 (uncharacterized protein E5676_scaffold3009G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-10
Identity = 47/94 (50.00%), Postives = 58/94 (61.70%), Query Frame = 0 

Query: 1   MNESQNVIWIHEDKDVAWFLTLVKDQSTKHPLGAHV-----DMVLGRSSSAIVGYENLSS 60
           + + Q V+ I EDKDV WFL+LVK Q T+HPL AH      DM L  SS    G +NL S
Sbjct: 66  ITDIQTVVQIQEDKDVTWFLSLVKGQITRHPLVAHAIAHVPDMDLEWSSVVDSGMDNLCS 125

Query: 61  -VDSSSSNVDFQVITDVH-----FDGDLKENDVF 84
            + SSS N DFQ++TD+H     F  DLKE D+F
Sbjct: 126 LLPSSSINDDFQILTDIHVSSLSFTFDLKEKDMF 159

[Close]
BLAST of Spg035192 vs. NCBI nr
Match: KAA0065296.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 4.1e-10
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 5   QNVIWIHEDKDVAWFLTLVKDQSTKHPLGAHV-----DMVLGRSSSAIVGYENLSS-VDS 64
           Q V+ I EDKDV WFL+LVK Q T+HPL AH      DM L  SS    G +NL S + S
Sbjct: 70  QTVVQIQEDKDVTWFLSLVKGQITRHPLVAHAIAHVPDMDLEWSSVVDSGMDNLCSLLPS 129

Query: 65  SSSNVDFQVITDVHFDG-----DLKENDVF 84
           SS + DFQ++TD+H        DLKEND+F
Sbjct: 130 SSIDDDFQILTDIHVSSFSSTFDLKENDMF 159

[Close]
BLAST of Spg035192 vs. NCBI nr
Match: KAA0066702.1 (uncharacterized protein E6C27_scaffold271G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 7.0e-10
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 0 

Query: 1   MNESQNVIWIHEDKDVAWFLTLVKDQSTKHPLGAHV-----DMVLGRSSSAIVGYENLSS 60
           + + QNV+ I EDKDV WFL+LVK   T+HPL AH      +M L  SS    G +NL S
Sbjct: 66  ITDIQNVVQIQEDKDVTWFLSLVKGHITRHPLVAHAIAHVSNMDLEWSSVVDSGMDNLCS 125

Query: 61  -VDSSSSNVDFQVITDVHFDG-----DLKENDVF 84
            + SSS + DFQ++TD+H        DLKEND+F
Sbjct: 126 LLPSSSIDDDFQILTDIHVSSLSSTFDLKENDMF 159

[Close]
BLAST of Spg035192 vs. ExPASy TrEMBL
Match: A0A5D3DFS5 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00020 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.8e-11
Identity = 47/94 (50.00%), Postives = 58/94 (61.70%), Query Frame = 0 

Query: 1   MNESQNVIWIHEDKDVAWFLTLVKDQSTKHPLGAHV-----DMVLGRSSSAIVGYENLSS 60
           + + Q V+ I EDKDV WFL+LVK Q T+HPL AH      DM L  SS    G +NL S
Sbjct: 66  ITDIQTVVQIQEDKDVTWFLSLVKGQITRHPLVAHAIAHVPDMDLEWSSVVDSGMDNLCS 125

Query: 61  -VDSSSSNVDFQVITDVH-----FDGDLKENDVF 84
            + SSS N DFQ++TD+H     F  DLKE D+F
Sbjct: 126 LLPSSSINDDFQILTDIHVSSLSFTFDLKEKDMF 159

[Close]
BLAST of Spg035192 vs. ExPASy TrEMBL
Match: A0A5A7VG38 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00100 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 5   QNVIWIHEDKDVAWFLTLVKDQSTKHPLGAHV-----DMVLGRSSSAIVGYENLSS-VDS 64
           Q V+ I EDKDV WFL+LVK Q T+HPL AH      DM L  SS    G +NL S + S
Sbjct: 70  QTVVQIQEDKDVTWFLSLVKGQITRHPLVAHAIAHVPDMDLEWSSVVDSGMDNLCSLLPS 129

Query: 65  SSSNVDFQVITDVHFDG-----DLKENDVF 84
           SS + DFQ++TD+H        DLKEND+F
Sbjct: 130 SSIDDDFQILTDIHVSSFSSTFDLKENDMF 159

[Close]
BLAST of Spg035192 vs. ExPASy TrEMBL
Match: A0A5A7VEB2 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G00350 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.4e-10
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 0 

Query: 1   MNESQNVIWIHEDKDVAWFLTLVKDQSTKHPLGAHV-----DMVLGRSSSAIVGYENLSS 60
           + + QNV+ I EDKDV WFL+LVK   T+HPL AH      +M L  SS    G +NL S
Sbjct: 66  ITDIQNVVQIQEDKDVTWFLSLVKGHITRHPLVAHAIAHVSNMDLEWSSVVDSGMDNLCS 125

Query: 61  -VDSSSSNVDFQVITDVHFDG-----DLKENDVF 84
            + SSS + DFQ++TD+H        DLKEND+F
Sbjct: 126 LLPSSSIDDDFQILTDIHVSSLSSTFDLKENDMF 159

[Close]
BLAST of Spg035192 vs. ExPASy TrEMBL
Match: A0A5A7T3G5 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G00710 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.9e-10
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 0 

Query: 5   QNVIWIHEDKDVAWFLTLVKDQSTKHPLGAHV-----DMVLGRSSSAIVGYENLSS-VDS 64
           Q V+ I EDKDV WFL+LVK Q T+HPL AH      DM L  SS    G +NL S + S
Sbjct: 70  QTVVQIQEDKDVTWFLSLVKGQITRHPLVAHAIAHVPDMDLEWSSVVDSGMDNLCSLLPS 129

Query: 65  SSSNVDFQVITDVHFDG-----DLKENDVF 84
           SS + DFQ++TD+H        DLKE D+F
Sbjct: 130 SSIDDDFQILTDIHVSSLSSTFDLKEKDMF 159

[Close]
BLAST of Spg035192 vs. ExPASy TrEMBL
Match: A0A5D3DAW8 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001090 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.9e-10
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 0 

Query: 5   QNVIWIHEDKDVAWFLTLVKDQSTKHPLGAHV-----DMVLGRSSSAIVGYENLSS-VDS 64
           Q V+ I EDKDV WFL+LVK Q T+HPL AH      DM L  SS    G +NL S + S
Sbjct: 70  QTVVQIQEDKDVTWFLSLVKGQITRHPLVAHAIAHVPDMDLEWSSVVDSGMDNLCSLLPS 129

Query: 65  SSSNVDFQVITDVHFDG-----DLKENDVF 84
           SS + DFQ++TD+H        DLKE D+F
Sbjct: 130 SSIDDDFQILTDIHVSSLSSTFDLKEKDMF 159

The following BLAST results are available for this feature:
BLAST of Spg035192 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038907134.12.1e-1456.82uncharacterized protein LOC120092945 [Benincasa hispida][more]
XP_038891569.11.5e-1247.75uncharacterized protein LOC120080959 [Benincasa hispida][more]
TYK22454.11.4e-1050.00uncharacterized protein E5676_scaffold3009G00020 [Cucumis melo var. makuwa][more]
KAA0065296.14.1e-1051.11protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa][more]
KAA0066702.17.0e-1047.87uncharacterized protein E6C27_scaffold271G00350 [Cucumis melo var. makuwa][more]
BLAST of Spg035192 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg035192 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DFS56.8e-1150.00SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7VG382.0e-1051.11Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7VEB23.4e-1047.87DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7T3G59.9e-1050.00Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DAW89.9e-1050.00Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of Spg035192 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035192.1Spg035192.1mRNA