Spg035182 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035182
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold4: 24547749 .. 24550640 (-)
RNA-Seq ExpressionSpg035182
SyntenySpg035182
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGTCTTCAGGTTGTTTGGACGACACATGGTCCGAACATTGCTCTATTTGAGTTTTGGAGAGTTTGGAACACAATGTTCGGTCCAATGAGAGATCATTATGTGGTTTGGACGACGACTATCCAAACCTTGCTCCGTTTGAGTTTTGGAGAGTTTGGAACACAAAGTTCGGTCCAATGAGATATCTTTAGGTGGTATGGACGAAGATGGTCCAAACTTTTCTCCGTTTTAGTTTTGGAGAGTTTGGAACACAAACTTCGGACCAATGATATATCTTTAGTTGGTTTGAACGAAGATGGTCCAAAATTTGCTCCGATTGAGTTTTCGAGAGTTTGGAACACAAAGTTCGGCCCAATGAGAGGTCTTGTAAACCCGAGACTTCTCTAGGATCATTTTCTCTTGTCATCTATTGTTGAAGTTGAACTAAAAGTTGTTGTTATTCATTGTCTAGGAAAAATGGCGAAGTTTTGTGGTTCTTTGTGGTTCATTGTTGGTTGAAGTTGTTGGGATTTTCTAATTTAAAAGAAGAAAGAAAAGAATGGAAATAAAGATGAAAAGAAAAGAAAAGAAAAGGAAAAGGAAAAGGAAAAACAAAGATAAAAAAAAAAAAAAGGAAAGAAAGAAAATGGGAAGGGACAGCAAAGACTCCACCACCGACAGGCTCATTTTTCAGCTCATGTTCAGCTCATTTTTCATCATTATCCATCCAAATTTTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAAAATTTCGTGGTTTTGAGGTTGAAGAAGATATGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTGATTCGGTTTGAGCTACACAGAAGGAACTAATAGGTGAGGTTTGATTTTCTTGAAAGTTAGTTCATTTGCTAGCAACTTTCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGAGCATTCTGGGATGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGATTATTCAATTTCCTACAACTTTCATGAAGATTTCGTGAGCCAGAAATGACTTTAAGTAGGTTTAATTTCAGGAGATAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGACAAATCGGTTGGGAATCTCGTTTTCATTTCTTCAGGTACGTTGTAGAGTGTTCGCAAATGAAGAGTTTGATGTGTATTTCATTAATTTTAGTTAAGTAGTGAGGAAGTTATGGGTATTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGGTTCTTAATTCAAGTGTCTAGAATTTATGAGCATGGAAGAATGAGACCATCTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGATAAGACGGTGAGTGACAAAATGAATTTCAAAAATTGTTTCCAACGGTTGTTCATGTTTAGACGTTTTATATGCTTTACCATGAATGATATATGATTTTTATGAACGGTTTCAAGCATAAGTTTTGAGCTCAGATTTTCTAACGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAACGATTTCCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAAGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTCAATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATGTTTTGGAAAGCCTTTATTATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTATTCACGTGTTTTAACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGACACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTAAGGATTGGATAATTTAGTCTTAGAGGTCGTGGTTGTACAAACCCTAGTTGTATATGTTTTTGGTTGTGATATCTATATCAGGTTATTATCCGAACCAAGTTATGTCAGGGCGACACCTCGTGTTTGTTGAAAGTTTTTTTTTCAGGGATTCCGCCGTGTTCTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTCAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAGCTCCATGGGAAATGAGACATGGTAGTTAGTGCTAAGAAAAATCCAGGAAGTAAATAGTTAGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGTCAGGACTAG

mRNA sequence

ATGAGAGGTCTTCAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGACAAATCGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGATAAGACGGTAGAGATCGAGCTCCCGGTGCCTGACACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCTACGTTTCAGGAGGGTCAACGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGTCAGGACTAG

Coding sequence (CDS)

ATGAGAGGTCTTCAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGACAAATCGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGATAAGACGGTAGAGATCGAGCTCCCGGTGCCTGACACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCTACGTTTCAGGAGGGTCAACGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGTCAGGACTAG

Protein sequence

MRGLQGSREPRICVVCVRGNSGQIGWESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFYVSGGSTDVGSVQIELAEYGPSIVESESSQD
Homology
[Close]
BLAST of Spg035182 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-13
Identity = 43/57 (75.44%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 35  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFY 92
           PRGNR +L T +LDKTVEIELPVPDTLPTSAESS+S+S+TW+ELY ESV +V +LFY
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESV-HVEMLFY 134

[Close]
BLAST of Spg035182 vs. NCBI nr
Match: TYJ96965.1 (uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-12
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0 

Query: 24  IGWESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESV 83
           I + + F    PRGNR S QT +LDKTVEIELPVPDTLPTSAESS S+S+TW+ELY ESV
Sbjct: 126 IQYPTTFMNIWPRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSGSNSSTWLELYFESV 185

Query: 84  Y 85
           +
Sbjct: 186 H 186

[Close]
BLAST of Spg035182 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 6.5e-12
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 34 RPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFYVS 93
          RPRGNR SLQT +LDKTVEIELP+PDTLPT AES  S+S+TW+ELY ESV+   + ++ +
Sbjct: 30 RPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFESVHVERLCYFTN 89

[Close]
BLAST of Spg035182 vs. NCBI nr
Match: KAA0066795.1 (uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK27942.1 uncharacterized protein E5676_scaffold384G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 6.5e-12
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 27  ESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY 85
           + + +   PRGNR SLQTRELDKT  IELPVPDTLPTSAESS S+S+TW+ELY ESV+
Sbjct: 56  DQKLYLVWPRGNRPSLQTRELDKT--IELPVPDTLPTSAESSGSNSSTWLELYFESVH 111

[Close]
BLAST of Spg035182 vs. NCBI nr
Match: KAA0062263.1 (hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 37/50 (74.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 35  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY 85
           PRGNR SLQ  +L+KTVEIELP+PDTLPTS+ESS+S+S+TW+ELY ESV+
Sbjct: 91  PRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFESVH 140

[Close]
BLAST of Spg035182 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.8e-14
Identity = 43/57 (75.44%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 35  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFY 92
           PRGNR +L T +LDKTVEIELPVPDTLPTSAESS+S+S+TW+ELY ESV +V +LFY
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESV-HVEMLFY 134

[Close]
BLAST of Spg035182 vs. ExPASy TrEMBL
Match: A0A5D3BET3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00070 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0 

Query: 24  IGWESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESV 83
           I + + F    PRGNR S QT +LDKTVEIELPVPDTLPTSAESS S+S+TW+ELY ESV
Sbjct: 126 IQYPTTFMNIWPRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSGSNSSTWLELYFESV 185

Query: 84  Y 85
           +
Sbjct: 186 H 186

[Close]
BLAST of Spg035182 vs. ExPASy TrEMBL
Match: A0A5D3DWP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001370 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.1e-12
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 27  ESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY 85
           + + +   PRGNR SLQTRELDKT  IELPVPDTLPTSAESS S+S+TW+ELY ESV+
Sbjct: 56  DQKLYLVWPRGNRPSLQTRELDKT--IELPVPDTLPTSAESSGSNSSTWLELYFESVH 111

[Close]
BLAST of Spg035182 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.1e-12
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 34 RPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFYVS 93
          RPRGNR SLQT +LDKTVEIELP+PDTLPT AES  S+S+TW+ELY ESV+   + ++ +
Sbjct: 30 RPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFESVHVERLCYFTN 89

[Close]
BLAST of Spg035182 vs. ExPASy TrEMBL
Match: A0A5A7V2F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00320 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.0e-12
Identity = 37/50 (74.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 35  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY 85
           PRGNR SLQ  +L+KTVEIELP+PDTLPTS+ESS+S+S+TW+ELY ESV+
Sbjct: 91  PRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFESVH 140

The following BLAST results are available for this feature:
BLAST of Spg035182 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052218.12.0e-1375.44uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
TYJ96965.12.2e-1268.85uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa][more]
KAA0040420.16.5e-1265.00NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0066795.16.5e-1270.69uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK... [more]
KAA0062263.11.4e-1174.00hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa][more]
BLAST of Spg035182 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg035182 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UAH69.8e-1475.44CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3BET31.1e-1268.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DWP33.1e-1270.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TAS63.1e-1265.00NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7V2F27.0e-1274.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Spg035182 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035182.1Spg035182.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding