Spg035181 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035181
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold4: 24513987 .. 24515679 (-)
RNA-Seq ExpressionSpg035181
SyntenySpg035181
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGCTTAATACCCACCACCACCAAAGTGATCTCAGCCCATTTTTCAAGCCATTTTGCTCATCTTTTTCCACCCAAACTTTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGGAATAAGAGGTGAGATTTGCTTTTCTTGAAAGTTATTTAATTTTCTAACAAAATTCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGATTTTTTAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGCGTATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTGGGTATGGCTGGAAAGATTATTCAATTTCCTACAACTTTCATGAAGATTTTGTGAGCCAAATATGACTTTAAGTAGGTTTAATTTCAGGAGATAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGACAAATCGGTTGGGAATCCCGTTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTATTGGAAGTTACGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGGTTCTTAATTCAAGTGTCTAGAATTTATGAGCATGGAAGAATGAGACCATCTACGGTTCTAATACTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACGATTGTTCATGTTTAGACGTTTTATATGTTTTTCCATGAATGATATATGATTTCTATGAATGGTTTCAAGCATAAGTTTTGAGCTCATATTTTCTAACGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGGAAAGTAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAACGATTTCCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACATAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTCAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAATGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATATTTTAGAAAGCCTTTTTCATTACACGTTTATGTTAAACGCTTGAATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGATTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTTATTCTTTCAAAATGT

mRNA sequence

ATGGACAGCTTAATACCCACCACCACCAAAGTGATCTCAGCCCATTTTTCAAGCCATTTTGCTCATCTTTTTCCACCCAAACTTTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTAG

Coding sequence (CDS)

ATGGACAGCTTAATACCCACCACCACCAAAGTGATCTCAGCCCATTTTTCAAGCCATTTTGCTCATCTTTTTCCACCCAAACTTTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTAG

Protein sequence

MDSLIPTTTKVISAHFSSHFAHLFPPKLSEHLRERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQN
Homology
[Close]
BLAST of Spg035181 vs. NCBI nr
Match: TYK08801.1 (hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-05
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 20  FAHLFPPKLSEHLRERVKEEEEEEFRGFEVEEDKKSSCKASHSRIW 66
           F H FP KLSEH  ERVK EEEEEFRG  +++  KSSCKA+H RIW
Sbjct: 64  FLHHFPSKLSEHFEERVK-EEEEEFRGLRLKKIGKSSCKANHCRIW 108

[Close]
BLAST of Spg035181 vs. ExPASy TrEMBL
Match: A0A5D3CAC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00040 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.4e-06
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 20  FAHLFPPKLSEHLRERVKEEEEEEFRGFEVEEDKKSSCKASHSRIW 66
           F H FP KLSEH  ERVK EEEEEFRG  +++  KSSCKA+H RIW
Sbjct: 64  FLHHFPSKLSEHFEERVK-EEEEEFRGLRLKKIGKSSCKANHCRIW 108

The following BLAST results are available for this feature:
BLAST of Spg035181 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK08801.11.9e-0567.39hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa][more]
BLAST of Spg035181 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg035181 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CAC69.4e-0667.39Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg035181 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035181.1Spg035181.1mRNA