Spg035042 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035042
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold3: 27922845 .. 27923222 (+)
RNA-Seq ExpressionSpg035042
SyntenySpg035042
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAATCAACTTCCACCTGCAAAAATCGAAGATTCCAGACCTCCTTCTTCTCCGAATCTGAAATCGACGTCGCAATACAGCTTATTCATCTCAGCGAAGACTCCGATTACCACGACGACATCACCGCCTCCTCGACTAGTTGCAGCGACGACAAATCCTTCGCCTCCGCCACCAGCGCCACCAACGCCGCTGGAATGGAAGACGACGGAAGCCACACCAGCCGTCGCGGAGCCACGGCGGCGCCTCCAACCACTCTGATAGAAGACATCTTCGAAGAAATCGGAGACGGCGCGAATCGGAGGCGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTAATCTCCGTGAAGTAA

mRNA sequence

ATGGCGAAATCAACTTCCACCTGCAAAAATCGAAGATTCCAGACCTCCTTCTTCTCCGAATCTGAAATCGACGTCGCAATACAGCTTATTCATCTCAGCGAAGACTCCGATTACCACGACGACATCACCGCCTCCTCGACTAGTTGCAGCGACGACAAATCCTTCGCCTCCGCCACCAGCGCCACCAACGCCGCTGGAATGGAAGACGACGGAAGCCACACCAGCCGTCGCGGAGCCACGGCGGCGCCTCCAACCACTCTGATAGAAGACATCTTCGAAGAAATCGGAGACGGCGCGAATCGGAGGCGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTAATCTCCGTGAAGTAA

Coding sequence (CDS)

ATGGCGAAATCAACTTCCACCTGCAAAAATCGAAGATTCCAGACCTCCTTCTTCTCCGAATCTGAAATCGACGTCGCAATACAGCTTATTCATCTCAGCGAAGACTCCGATTACCACGACGACATCACCGCCTCCTCGACTAGTTGCAGCGACGACAAATCCTTCGCCTCCGCCACCAGCGCCACCAACGCCGCTGGAATGGAAGACGACGGAAGCCACACCAGCCGTCGCGGAGCCACGGCGGCGCCTCCAACCACTCTGATAGAAGACATCTTCGAAGAAATCGGAGACGGCGCGAATCGGAGGCGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTAATCTCCGTGAAGTAA

Protein sequence

MAKSTSTCKNRRFQTSFFSESEIDVAIQLIHLSEDSDYHDDITASSTSCSDDKSFASATSATNAAGMEDDGSHTSRRGATAAPPTTLIEDIFEEIGDGANRRRRKRRSRSVYEIYKLTKPVISVK
Homology
BLAST of Spg035042 vs. NCBI nr
Match: KAG6571728.1 (hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.5 bits (480), Expect = 1.7e-44
Identity = 105/126 (83.33%), Postives = 113/126 (89.68%), Query Frame = 0

Query: 1   MAKSTSTCKNRRFQTSFFSESEIDVAIQLIHLSEDSDYHDDITASSTSCSDDKSFASATS 60
           MAKS S+CKNRRF+TS FS+SEIDVAIQL+HLSEDSDY  +  ASSTSCSDDKS ASATS
Sbjct: 1   MAKSISSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANTIASSTSCSDDKSVASATS 60

Query: 61  ATNAAGMEDDGSH-TSRRGATAAPPTTLIEDIFEEIGDGANRRRRKRRSRSVYEIYKLTK 120
           ATNAAGMEDDGSH +SRRGAT  P T+LIEDIFEEIGD +NRRRRKRRSRSVYEIYKLTK
Sbjct: 61  ATNAAGMEDDGSHSSSRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTK 120

Query: 121 PVISVK 126
           P ISVK
Sbjct: 121 PFISVK 126

BLAST of Spg035042 vs. NCBI nr
Match: KAG6588821.1 (hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.1 bits (427), Expect = 2.4e-38
Identity = 97/125 (77.60%), Postives = 105/125 (84.00%), Query Frame = 0

Query: 1   MAKSTSTCKNRRFQTSFFSESEIDVAIQLIHLSEDSDYHDDITASSTSCSDDKSFASATS 60
           MA+S ST +NRRFQTS FS+SEIDVAIQLIHLSEDSDYHD++ ASSTSCSDDKS ASA S
Sbjct: 1   MAESVSTSRNRRFQTSIFSDSEIDVAIQLIHLSEDSDYHDELPASSTSCSDDKSLASA-S 60

Query: 61  ATNAAGMEDDGSHTSRRGATAAPPTTLIEDIFEEIGDGANRRRRKRRSRSVYEIYKLTKP 120
            +NA  MEDDG +  RRG      TT IEDI+EEIGDGANRRRRKRRSRSVYEIYKLTKP
Sbjct: 61  NSNADEMEDDGRNNGRRGT----KTTPIEDIYEEIGDGANRRRRKRRSRSVYEIYKLTKP 120

Query: 121 VISVK 126
           VI VK
Sbjct: 121 VIFVK 120

BLAST of Spg035042 vs. ExPASy TrEMBL
Match: A0A5N6RSQ1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020111 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-04
Identity = 51/127 (40.16%), Postives = 64/127 (50.39%), Query Frame = 0

Query: 1   MAKSTSTCKNRRFQTS---FFSESEIDVAIQLIHLSEDSD--YHDDITASSTSCSDDKSF 60
           MAKS   CK RR Q      FSESE+DVA QLI LS +SD  +H+D   ++TSC + K  
Sbjct: 1   MAKSALACKARRTQKQKGFSFSESEMDVARQLIQLSGESDDHHHNDDDYNNTSCVEGK-- 60

Query: 61  ASATSATNAAGMEDDGSHTSRRGATAAPPTTLIEDIFEEIGDGANRRRRKRRSRSVYEIY 120
                  N  G   D S T+         TT+ E   E+  +      RKRR RS+  +Y
Sbjct: 61  ----VEQNKVGDATDASSTN--------TTTIGETFGEKEEEDGICWPRKRRFRSISHLY 113

Query: 121 KLTKPVI 123
             TKPVI
Sbjct: 121 SSTKPVI 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6571728.11.7e-4483.33hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588821.12.4e-3877.60hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5N6RSQ15.5e-0440.16Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020111 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035042.1Spg035042.1mRNA