Spg035015 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035015
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold3: 27596910 .. 27599403 (-)
RNA-Seq ExpressionSpg035015
SyntenySpg035015
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAGCTCGAAAACGTCAAGCGCACCAAAGAAACGACTGAATAGGAGCTTAAAGGTTGTGAAGAGTCAAATTATCTATGAATGAAACTTCAATTCAGATGCTAGAGGTTTTGTTTTTTGTCTTATATTTCACTTTATAATTGCTTCATAGTTGCATGATTATTTTTTCTTCTTAAATTTAATTTATCGAATTCAGGCAAGAATTTCTGTACTTCAAGGTGAAATTGCATCTATTGAATCTGAGTTAGAATTGTTTAAGGTGCGAAGTTGATATTTGGAGTTCTTTATATATTAAATTGCGTCTACCTTAGTTACATTTCTATTCTTAACTTTCTTTATTCTCTTAAAAACTTGTGTTGTTGGATCATAAAAGTGTGAAGGAGGTGCCTAAAGGTAGAAAATACGTCTCTCGCTTTTGTGATTTGCAATCTATTAGAATAGTATGAATTTGTTCTATTCTTATTAAGTTTATTATTCAATGGATTAGATTACTGTGAAAGTGATGAGTTCTTATCAGCCATGTAGAGACCAATTGATCAATCACATGTTAGAACTCAATGAAAAAATTAGGTCTGTCTTCTATATTAATGTAAGCAACTTGCACTGTGAATGCATATACATATGTTTCCCTTTTTCAGTACCATTTTTACTTATCAATTCTGAACATGACCATAGACTCGACAATTTTCAACCAGGACTTGTTTGGAAACTGTTCTCAAAATAGTTTTCTATTTTTATTGTTAAAGTTGCTTCTATTAACTAATATTTGTTGCAAAATCTGGGTTTGGATGGTGAAACCAGTTCTGTACAGTTTAATGTAAGCAATTTGTAATAATTTATATGCATTCCCATTCATTTTAGCAGCTATTTGTTTAATCTTGTAAGGTTGATGATCATTTGTGGGATGTAATTCTGTTGTTGAATTTTGTGCGAGTCTAGTTTTTGGAAGAAAGCCCACTTTTTTGTTCTGTGTTGCCATTTTTACTCTCACTGAGGCTAAGCTAATGATTTTGGGGATTCTGGGTTTTGGAGAAGAAATTTGAAGAAGATATTGAGTTTCTTATGTTTATTCCATATGTTTTCTTCAATTTTTCTTCATACTATACAAGTAATAAAACATCAATCATTCAACAGGAATCAAGCTTCAAGAAGCAACTTTATGGTCTTGGTTCCTTCTTTCTTTTCGTGGAGCTAATTGCTTATGGCTTCGCGATTCAAGCACAAACATTTCCTTTGCACGTTGCAAATGGTGGGTTAATGCAAGTTTTGTGGCTGTGGAGAAATTTGTCAAGAGAAAAAAATCGACCGAACGAACAGAGCCCTTTCATAAGTAAAGGTACTTCTTAACCGTGGACGATTGAATAATAATTGTAAATTCTTGTTAGAGTTGAATAATAGTTTATTTTAGGTTTACCCTTAATTGTGGCTTTTCAAAAAATTGTTATTATAGATTAAACTAGTTTTTTCATATTAAGTGACTTGTATTGCAATTTTGAGCAGTCATATCGTGTTGTTGAATGGTATAATTTTCCATTATAATTGAGCCCAGTTTAGCACTCTGAGTGGGAATTTCATGGGTTTGGGTTTTTTATCATACTGGTTGTTTTTGTTGTGATTTGTTCGATAATCCTCTAGATGTCGTTGGTTATTAGCTCTACTTTACTCGTACGTCTTGAGTTTTAATTTTAGTTTAAGGATTTGATTGGAGATGTGTGTCAATTGTATTGTACTTACGTTTTTGCTTTGTATAAGGTTTGGAATTCATCTTGTTAAGCGAGAATTGTTGCAGATGTTGAAATGGATATTCTCGAAAAGGAGCTCGAAGAGGAACTTGAGAAAGAGCATTTAAGGAGTTGTGTTCTTATTTTGTTTAGTAATTTTACTTTTTCTTTGTAAATTGGTTCATGGATGTGATTTGTGGAAGGACGAAAATTTTCATGTATTATATACACTATTATATTTTATTAATTAAATCCATGTTCGTTGAGTTAGTTGTTGTGTAAAAATACTTTCGAGATTTTATTTTGTGTATACGTTGAAATTCTATTTTGTTTACAGGTTTTTACAAAATGAAGAAGTAGTATTATTGTTGGTTACCTATGTGTGCAACCAACAATTTTTTTTATTTAATGTCGCACATTTAATGTCATACACTTTTAATGTCGACCAATGACCGGCATAAAAAACTAACCGACATTAAAAGTGACTTTTAATGTTGAACAAAGAGTGGTTGACCAACATTAAAAGGGTATTGCCCGACATTAAAAGTGTCCAACATTTAAACCTTTTAATGTCGGTGGCTTTAATGTCGGCATTGACTGACATTAAAGCAGCTAACGCGCGCGCTGCTAGGGTTTTCGCATCAGCATCGATACGCCGTGAAACAGCGTCCCGACGCTGATGCGTCTAGATGCAATTCTGGACCTTTTTTCTGTGGTTGTTTTCTGAATTTTGGCAAAATTTGTCTCCGATCTTCATCACCAACAGACTAA

mRNA sequence

ATGCAGAGCTCGAAAACGTCAAGCGCACCAAAGAAACGACTGAATAGGAGCTTAAAGGCAAGAATTTCTGTACTTCAAGGTGAAATTGCATCTATTGAATCTGAGTTAGAATTGTTTAAGGAATCAAGCTTCAAGAAGCAACTTTATGGTCTTGGTTCCTTCTTTCTTTTCGTGGAGCTAATTGCTTATGGCTTCGCGATTCAAGCACAAACATTTCCTTTGCACGTTGCAAATGGTGGGTTAATGCAAGTTTTGTGGCTGTGGAGAAATTTGTCAAGAGAAAAAAATCGACCGAACGAACAGAGCCCTTTCATAAGTAAAGATGTTGAAATGGATATTCTCGAAAAGGAGCTCGAAGAGGAACTTGAGAAAGAGCATTTAAGGAGTTGTCTAACGCGCGCGCTGCTAGGGTTTTCGCATCAGCATCGATACGCCGTGAAACAGCGTCCCGACGCTGATGCGTCTAGATGCAATTCTGGACCTTTTTTCTGTGGTTGTTTTCTGAATTTTGGCAAAATTTGTCTCCGATCTTCATCACCAACAGACTAA

Coding sequence (CDS)

ATGCAGAGCTCGAAAACGTCAAGCGCACCAAAGAAACGACTGAATAGGAGCTTAAAGGCAAGAATTTCTGTACTTCAAGGTGAAATTGCATCTATTGAATCTGAGTTAGAATTGTTTAAGGAATCAAGCTTCAAGAAGCAACTTTATGGTCTTGGTTCCTTCTTTCTTTTCGTGGAGCTAATTGCTTATGGCTTCGCGATTCAAGCACAAACATTTCCTTTGCACGTTGCAAATGGTGGGTTAATGCAAGTTTTGTGGCTGTGGAGAAATTTGTCAAGAGAAAAAAATCGACCGAACGAACAGAGCCCTTTCATAAGTAAAGATGTTGAAATGGATATTCTCGAAAAGGAGCTCGAAGAGGAACTTGAGAAAGAGCATTTAAGGAGTTGTCTAACGCGCGCGCTGCTAGGGTTTTCGCATCAGCATCGATACGCCGTGAAACAGCGTCCCGACGCTGATGCGTCTAGATGCAATTCTGGACCTTTTTTCTGTGGTTGTTTTCTGAATTTTGGCAAAATTTGTCTCCGATCTTCATCACCAACAGACTAA

Protein sequence

MQSSKTSSAPKKRLNRSLKARISVLQGEIASIESELELFKESSFKKQLYGLGSFFLFVELIAYGFAIQAQTFPLHVANGGLMQVLWLWRNLSREKNRPNEQSPFISKDVEMDILEKELEEELEKEHLRSCLTRALLGFSHQHRYAVKQRPDADASRCNSGPFFCGCFLNFGKICLRSSSPTD
Homology
[Close]
BLAST of Spg035015 vs. NCBI nr
Match: XP_038900238.1 (uncharacterized protein LOC120087328 [Benincasa hispida])

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-24
Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 40  KESSFKKQLYGLGSFFLFVELIAYGFAIQAQTFPLHVANGGLMQVLWLWRNLSREKNRPN 99
           +ES FKKQLYGLGSFF+ V+LIAYGF IQAQ FPLHVANGGLMQVLWLWRNLSRE+NRPN
Sbjct: 157 EESIFKKQLYGLGSFFVLVKLIAYGFVIQAQAFPLHVANGGLMQVLWLWRNLSRERNRPN 216

Query: 100 EQSPFISK 108
           EQSPF+ +
Sbjct: 217 EQSPFVGQ 224

[Close]
BLAST of Spg035015 vs. NCBI nr
Match: XP_008452688.1 (PREDICTED: uncharacterized protein LOC103493634 [Cucumis melo] >TYK20112.1 putative Embryo defective 1273 [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 8.5e-24
Identity = 54/68 (79.41%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 40  KESSFKKQLYGLGSFFLFVELIAYGFAIQAQTFPLHVANGGLMQVLWLWRNLSREKNRPN 99
           +ESSFKKQLYG+GSFF+ V+LI YGFAIQAQ FPLHVANGGLMQVLWLWRNL +E+N+PN
Sbjct: 155 EESSFKKQLYGIGSFFILVKLIVYGFAIQAQLFPLHVANGGLMQVLWLWRNLPKERNQPN 214

Query: 100 EQSPFISK 108
           EQSPF+ +
Sbjct: 215 EQSPFVGQ 222

[Close]
BLAST of Spg035015 vs. NCBI nr
Match: KAA0064476.1 (putative Embryo defective 1273 [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 8.5e-24
Identity = 54/68 (79.41%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 40  KESSFKKQLYGLGSFFLFVELIAYGFAIQAQTFPLHVANGGLMQVLWLWRNLSREKNRPN 99
           +ESSFKKQLYG+GSFF+ V+LI YGFAIQAQ FPLHVANGGLMQVLWLWRNL +E+N+PN
Sbjct: 155 EESSFKKQLYGIGSFFILVKLIVYGFAIQAQLFPLHVANGGLMQVLWLWRNLPKERNQPN 214

Query: 100 EQSPFISK 108
           EQSPF+ +
Sbjct: 215 EQSPFVGQ 222

[Close]
BLAST of Spg035015 vs. NCBI nr
Match: XP_022159733.1 (uncharacterized protein LOC111026039 [Momordica charantia])

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-22
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 40  KESSFKKQLYGLGSFFLFVELIAYGFAIQAQTFPLHVANGGLMQVLWLWRNLSREKNRPN 99
           +ESSFKKQL+ LGS F+ V+LIAYGFA QAQ FPLHVANGGLMQVLWLWRN SRE+NRPN
Sbjct: 156 EESSFKKQLFALGSVFVLVKLIAYGFATQAQAFPLHVANGGLMQVLWLWRNRSRERNRPN 215

Query: 100 EQSPFI 106
           EQSPF+
Sbjct: 216 EQSPFV 221

[Close]
BLAST of Spg035015 vs. NCBI nr
Match: XP_004141304.1 (uncharacterized protein LOC101205191 [Cucumis sativus] >KGN55304.1 hypothetical protein Csa_012314 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 3.6e-22
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 40  KESSFKKQLYGLGSFFLFVELIAYGFAIQAQTFPLHVANGGLMQVLWLWRNLSREKNRPN 99
           +ESSFKKQLYG GSFF+ V+LI YGFAIQA  FPLHVANGGLMQVLWLWRNL RE+N+PN
Sbjct: 155 EESSFKKQLYGFGSFFILVKLIVYGFAIQAPVFPLHVANGGLMQVLWLWRNLPRERNQPN 214

Query: 100 EQSPFISK 108
           EQS F+ +
Sbjct: 215 EQSLFVGQ 222

[Close]
BLAST of Spg035015 vs. ExPASy TrEMBL
Match: A0A5A7VDP4 (Putative Embryo defective 1273 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001910 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.1e-24
Identity = 54/68 (79.41%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 40  KESSFKKQLYGLGSFFLFVELIAYGFAIQAQTFPLHVANGGLMQVLWLWRNLSREKNRPN 99
           +ESSFKKQLYG+GSFF+ V+LI YGFAIQAQ FPLHVANGGLMQVLWLWRNL +E+N+PN
Sbjct: 155 EESSFKKQLYGIGSFFILVKLIVYGFAIQAQLFPLHVANGGLMQVLWLWRNLPKERNQPN 214

Query: 100 EQSPFISK 108
           EQSPF+ +
Sbjct: 215 EQSPFVGQ 222

[Close]
BLAST of Spg035015 vs. ExPASy TrEMBL
Match: A0A5D3D973 (Putative Embryo defective 1273 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002370 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.1e-24
Identity = 54/68 (79.41%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 40  KESSFKKQLYGLGSFFLFVELIAYGFAIQAQTFPLHVANGGLMQVLWLWRNLSREKNRPN 99
           +ESSFKKQLYG+GSFF+ V+LI YGFAIQAQ FPLHVANGGLMQVLWLWRNL +E+N+PN
Sbjct: 155 EESSFKKQLYGIGSFFILVKLIVYGFAIQAQLFPLHVANGGLMQVLWLWRNLPKERNQPN 214

Query: 100 EQSPFISK 108
           EQSPF+ +
Sbjct: 215 EQSPFVGQ 222

[Close]
BLAST of Spg035015 vs. ExPASy TrEMBL
Match: A0A1S3BVL5 (uncharacterized protein LOC103493634 OS=Cucumis melo OX=3656 GN=LOC103493634 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.1e-24
Identity = 54/68 (79.41%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 40  KESSFKKQLYGLGSFFLFVELIAYGFAIQAQTFPLHVANGGLMQVLWLWRNLSREKNRPN 99
           +ESSFKKQLYG+GSFF+ V+LI YGFAIQAQ FPLHVANGGLMQVLWLWRNL +E+N+PN
Sbjct: 155 EESSFKKQLYGIGSFFILVKLIVYGFAIQAQLFPLHVANGGLMQVLWLWRNLPKERNQPN 214

Query: 100 EQSPFISK 108
           EQSPF+ +
Sbjct: 215 EQSPFVGQ 222

[Close]
BLAST of Spg035015 vs. ExPASy TrEMBL
Match: A0A6J1DZN6 (uncharacterized protein LOC111026039 OS=Momordica charantia OX=3673 GN=LOC111026039 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 7.8e-23
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 40  KESSFKKQLYGLGSFFLFVELIAYGFAIQAQTFPLHVANGGLMQVLWLWRNLSREKNRPN 99
           +ESSFKKQL+ LGS F+ V+LIAYGFA QAQ FPLHVANGGLMQVLWLWRN SRE+NRPN
Sbjct: 156 EESSFKKQLFALGSVFVLVKLIAYGFATQAQAFPLHVANGGLMQVLWLWRNRSRERNRPN 215

Query: 100 EQSPFI 106
           EQSPF+
Sbjct: 216 EQSPFV 221

[Close]
BLAST of Spg035015 vs. ExPASy TrEMBL
Match: A0A0A0L2N8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G645300 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-22
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 40  KESSFKKQLYGLGSFFLFVELIAYGFAIQAQTFPLHVANGGLMQVLWLWRNLSREKNRPN 99
           +ESSFKKQLYG GSFF+ V+LI YGFAIQA  FPLHVANGGLMQVLWLWRNL RE+N+PN
Sbjct: 155 EESSFKKQLYGFGSFFILVKLIVYGFAIQAPVFPLHVANGGLMQVLWLWRNLPRERNQPN 214

Query: 100 EQSPFISK 108
           EQS F+ +
Sbjct: 215 EQSLFVGQ 222

The following BLAST results are available for this feature:
BLAST of Spg035015 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038900238.11.0e-2483.82uncharacterized protein LOC120087328 [Benincasa hispida][more]
XP_008452688.18.5e-2479.41PREDICTED: uncharacterized protein LOC103493634 [Cucumis melo] >TYK20112.1 putat... [more]
KAA0064476.18.5e-2479.41putative Embryo defective 1273 [Cucumis melo var. makuwa][more]
XP_022159733.11.6e-2281.82uncharacterized protein LOC111026039 [Momordica charantia][more]
XP_004141304.13.6e-2277.94uncharacterized protein LOC101205191 [Cucumis sativus] >KGN55304.1 hypothetical ... [more]
BLAST of Spg035015 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg035015 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VDP44.1e-2479.41Putative Embryo defective 1273 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3D9734.1e-2479.41Putative Embryo defective 1273 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3BVL54.1e-2479.41uncharacterized protein LOC103493634 OS=Cucumis melo OX=3656 GN=LOC103493634 PE=... [more]
A0A6J1DZN67.8e-2381.82uncharacterized protein LOC111026039 OS=Momordica charantia OX=3673 GN=LOC111026... [more]
A0A0A0L2N81.7e-2277.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G645300 PE=4 SV=1[more]
BLAST of Spg035015 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..35
NoneNo IPR availablePANTHERPTHR36000DEFECTIVE 1273 PROTEIN, PUTATIVE-RELATEDcoord: 40..106
NoneNo IPR availablePANTHERPTHR36000:SF3PROTEIN, PUTATIVE-RELATEDcoord: 40..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035015.1Spg035015.1mRNA