Spg034954 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034954
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiongeneral transcription factor 3C polypeptide 5-like
Locationscaffold3: 24849000 .. 24851243 (+)
RNA-Seq ExpressionSpg034954
SyntenySpg034954
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TATGGTGGGTGGAGTAATCAAAGGTAAATCGATATCTGTAGGAATCATTTAAAAAAGAGACATATTATATTGATGGACAATAAACACGTATAAAAATGTGAATATTTAGCTATATATTGTTTAAACTTCTGTATAGAACTAATGTTAATTAATTTTAAATTTATTTTAGTTAATACTATTTTCATAAAATTTTTACACGTGCGGTATAAACCTAGTCTTTATAATAATAAAAAAAAAAAGCTTCTCTTTGGAGGGAGAATTAGTCCTTTGAAAAAAAGAGAAAATGAAGGGCACGGTAAATCCAGCTTTCTTTTCCATTCATTCACGTTTTTCCAAGTTTCTAATTTTTTTTTTTTGTTTGAAAATCCAGCTTTCTTTTCTTTTGTTATTTTTTTTATAACATTTTCTTTTTTTTCTAACCCTCTCTTTCTTCTCGCACGGTAAATTAAAGTTCACCTTTTCCAGCCACGCTTCGTCTTCTTCAACTTGCTCCAGCCAGCCACGCTTCGTCTGGCTTCGGCTTCGTCTTCGTCTTCTTCAACTGGCTTCGTCTTCATCTGGCATCTTCGTCTTCGCAGTTATCCGCTTGCTCCTTCTTCACGAGGGGTTTCTTCTCCGCTCCGCCGCACGAACTTCTTCTCCACGCTTTGTCTTCTTCAAATTGCAGGTATTTTGCAAAAAAATTTTTAGGTTTATTGATTTTTTGAATCGTAACGTTTCAATTCACCACGATTGTACGAGACATGTAATTTTCGATTCAAAACCACGTGCTGAATCGTTTTCTTCCCGTTTCAATTTGAATCTTACGATTCAAATCGTGAAACGTACGATTTTAACAACACTTATGATTGAGCATGCCAAATGTGAATTCTGTACAAGAATATGAATTACTAGAATTACTCTAGTTTAGGAGTGCGATTTTCTGCTTTTCAAGTGTCTACAATTTTTGGGATAGTTGTAGTTATGTTGTTATGCTGTCAGATTTTCGGTAGCGTTGCAGTGAACAACGGAGTTAAGTTTAGTAATATGTCTTGATTAGGATTTGCTGAAATTGACTGACTGATTAGTATAGACCATAGGTTCTCCAAACATGTTTCAGTATGACTTTTAGAGAACCATACGTGTGAATGAAAATAGTCTTAGAATCGGGACCATATCATGTTTTAGGGCCTTAGATAGACTTAAATGACCCTTAAGTCTTATGTTAGCTAGAGTTATTTCCTTCCCCATCTCAGGACTGTTAGAACCTAGTTTTCAGGCTCGTGCGTTTTATCAGTCTCAGGACTATTAGAGTCCAATTTTCAGGCACGTTATTGTGTGTTCTATCAATCTCAGGAATCTCAGGACGATGTTAAGCTTATGTGTAGACACCTTTTCGTGCACCAGTTGACCTTCAGGCATGTTTTCATGCACCATGTTTTCATGCACCAGTTGCTCCATCAAGTTAGGTAAGAACTAGTTGGTAACCATTCCTGAATATCGATTTGGTCAAGCTTTAAATTAAGTGTCAGAATTAGTGTGATTGAAGTCCTTAATTTTGGAAACTGATTAAGGTCGGTTAGAGTACTTTTCAAGACGAAATTGTTCTGTATGCGGGAGGTGTTATGGGACACTGCTGAAGAAAAAATACCGTTGAGGCTCACAATAGAAAGTGAATTTTCTCTGTAACAGAAACTGAGAATGGGGAAGCTGAAAGACAACACTATCTCAGGGACCTTACCTACTGCCCGGAGTTTTGCAGTTCACTATCCTGGTTATCCTTCATCCAAGCGACGGGCAATTGAAACTCTCGGAGGAACACAATCAATTCTCAAGGTACAATTAATAGTTGATATCAAATAATTGGAAATCATTTTGAAATGTCCACAGTTCCTTTCATTTCAATTTTCAAGTTTCGCCCTTAATATAAAACCTGATTGATTTATAAATATTTTGTTTTCAAGTCTAGTTATGTGTAAGTCATCGTTAATAAATCAATGCTTCCACTTCCTTGTGGAACCAAAGAAGGGTGCAGGGTTACTAGAATATCATTCTTAATATTTTATTTTATTATTTATTTTTTATATTAGTGCTCCTTTTCTGTTGGTTTACAATGCGATATAATCTGATGAGCTAACTTCTAGACTGTAGGGAGGAGAGGTTACCATCTTACTAGCTCACTCGGATGAGCTGGGTTTAGTGTTTTGTGACTCTGCTGCTAGTGGTTGTCTGTGCTTGTTGCTGTTTTTCTGCGTTATTTTGTGA

mRNA sequence

TATGGTGGGTGGAGTAATCAAAGCCAGCCACGCTTCGTCTGGCTTCGGCTTCGTCTTCGTCTTCTTCAACTGGCTTCGTCTTCATCTGGCATCTTCGTCTTCGCAGTTATCCGCTTGCTCCTTCTTCACGAGGGGTTTCTTCTCCGCTCCGCCGCACGAACTTCTTCTCCACGCTTTGTCTTCTTCAAATTGCAGGAATCTCAGGACGATGTTAAGCTTATGTGTAGACACCTTTTCGTGCACCAGTTGACCTTCAGGCATGTTTTCATGCACCATGTTTTCATGCACCAGTTGCTCCATCAAGTTAGGTCGGTTAGAAAACTGAGAATGGGGAAGCTGAAAGACAACACTATCTCAGGGACCTTACCTACTGCCCGGAGTTTTGCAGTTCACTATCCTGGTTATCCTTCATCCAAGCGACGGGCAATTGAAACTCTCGGAGGAACACAATCAATTCTCAAGGGAGGAGAGGTTACCATCTTACTAGCTCACTCGGATGAGCTGGGTTTAGTGTTTTGTGACTCTGCTGCTAGTGGTTGTCTGTGCTTGTTGCTGTTTTTCTGCGTTATTTTGTGA

Coding sequence (CDS)

TATGGTGGGTGGAGTAATCAAAGCCAGCCACGCTTCGTCTGGCTTCGGCTTCGTCTTCGTCTTCTTCAACTGGCTTCGTCTTCATCTGGCATCTTCGTCTTCGCAGTTATCCGCTTGCTCCTTCTTCACGAGGGGTTTCTTCTCCGCTCCGCCGCACGAACTTCTTCTCCACGCTTTGTCTTCTTCAAATTGCAGGAATCTCAGGACGATGTTAAGCTTATGTGTAGACACCTTTTCGTGCACCAGTTGACCTTCAGGCATGTTTTCATGCACCATGTTTTCATGCACCAGTTGCTCCATCAAGTTAGGTCGGTTAGAAAACTGAGAATGGGGAAGCTGAAAGACAACACTATCTCAGGGACCTTACCTACTGCCCGGAGTTTTGCAGTTCACTATCCTGGTTATCCTTCATCCAAGCGACGGGCAATTGAAACTCTCGGAGGAACACAATCAATTCTCAAGGGAGGAGAGGTTACCATCTTACTAGCTCACTCGGATGAGCTGGGTTTAGTGTTTTGTGACTCTGCTGCTAGTGGTTGTCTGTGCTTGTTGCTGTTTTTCTGCGTTATTTTGTGA

Protein sequence

YGGWSNQSQPRFVWLRLRLRLLQLASSSSGIFVFAVIRLLLLHEGFLLRSAARTSSPRFVFFKLQESQDDVKLMCRHLFVHQLTFRHVFMHHVFMHQLLHQVRSVRKLRMGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKGGEVTILLAHSDELGLVFCDSAASGCLCLLLFFCVIL
Homology
[Close]
BLAST of Spg034954 vs. NCBI nr
Match: XP_022989615.1 (general transcription factor 3C polypeptide 5-like [Cucurbita maxima] >XP_022989616.1 general transcription factor 3C polypeptide 5-like [Cucurbita maxima] >XP_022989617.1 general transcription factor 3C polypeptide 5-like [Cucurbita maxima] >XP_022989618.1 general transcription factor 3C polypeptide 5-like [Cucurbita maxima])

HSP 1 Score: 85.5 bits (210), Expect = 5.4e-13
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 110 MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK 155
           MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRAIETLGG QSILK
Sbjct: 1   MGKLKDNTISGFLPTAQVFAVHYPGYPSSKRRAIETLGGKQSILK 45

[Close]
BLAST of Spg034954 vs. NCBI nr
Match: XP_023530657.1 (general transcription factor 3C polypeptide 5-like [Cucurbita pepo subsp. pepo] >XP_023530658.1 general transcription factor 3C polypeptide 5-like [Cucurbita pepo subsp. pepo] >XP_023530659.1 general transcription factor 3C polypeptide 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.1 bits (209), Expect = 7.1e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 110 MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK 155
           MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRA+ETLGG QSILK
Sbjct: 1   MGKLKDNTISGFLPTAQVFAVHYPGYPSSKRRAVETLGGKQSILK 45

[Close]
BLAST of Spg034954 vs. NCBI nr
Match: XP_022927790.1 (general transcription factor 3C polypeptide 5-like [Cucurbita moschata] >XP_022927791.1 general transcription factor 3C polypeptide 5-like [Cucurbita moschata] >XP_022927792.1 general transcription factor 3C polypeptide 5-like [Cucurbita moschata] >XP_022927793.1 general transcription factor 3C polypeptide 5-like [Cucurbita moschata])

HSP 1 Score: 85.1 bits (209), Expect = 7.1e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 110 MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK 155
           MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRA+ETLGG QSILK
Sbjct: 1   MGKLKDNTISGFLPTAQVFAVHYPGYPSSKRRAVETLGGKQSILK 45

[Close]
BLAST of Spg034954 vs. NCBI nr
Match: KAG6588837.1 (General transcription factor 3C polypeptide 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.1 bits (209), Expect = 7.1e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 110 MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK 155
           MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRA+ETLGG QSILK
Sbjct: 1   MGKLKDNTISGFLPTAQVFAVHYPGYPSSKRRAVETLGGKQSILK 45

[Close]
BLAST of Spg034954 vs. NCBI nr
Match: KAG7022593.1 (General transcription factor 3C polypeptide 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.1 bits (209), Expect = 7.1e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 110 MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK 155
           MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRA+ETLGG QSILK
Sbjct: 1   MGKLKDNTISGFLPTAQVFAVHYPGYPSSKRRAVETLGGKQSILK 45

[Close]
BLAST of Spg034954 vs. ExPASy TrEMBL
Match: A0A6J1JKL2 (general transcription factor 3C polypeptide 5-like OS=Cucurbita maxima OX=3661 GN=LOC111486648 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-13
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 110 MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK 155
           MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRAIETLGG QSILK
Sbjct: 1   MGKLKDNTISGFLPTAQVFAVHYPGYPSSKRRAIETLGGKQSILK 45

[Close]
BLAST of Spg034954 vs. ExPASy TrEMBL
Match: A0A6J1EPX9 (general transcription factor 3C polypeptide 5-like OS=Cucurbita moschata OX=3662 GN=LOC111434581 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.4e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 110 MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK 155
           MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRA+ETLGG QSILK
Sbjct: 1   MGKLKDNTISGFLPTAQVFAVHYPGYPSSKRRAVETLGGKQSILK 45

[Close]
BLAST of Spg034954 vs. ExPASy TrEMBL
Match: A0A5D3DYQ3 (General transcription factor 3C polypeptide 5-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold381G00170 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.6e-13
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 110 MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKGGE 158
           MGKLKDNTISG LP A++FAVHYPGYPSSK RAIE+LGGTQSILK  E
Sbjct: 1   MGKLKDNTISGFLPAAQNFAVHYPGYPSSKHRAIESLGGTQSILKALE 48

[Close]
BLAST of Spg034954 vs. ExPASy TrEMBL
Match: A0A1S3CMW8 (general transcription factor 3C polypeptide 5-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502764 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-12
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 110 MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK 155
           MGKLKDNTISG LP A++FAVHYPGYPSSK RAIE+LGGTQSILK
Sbjct: 1   MGKLKDNTISGFLPAAQNFAVHYPGYPSSKHRAIESLGGTQSILK 45

[Close]
BLAST of Spg034954 vs. ExPASy TrEMBL
Match: A0A6J1DTW8 (general transcription factor 3C polypeptide 5-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023964 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 110 MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK 155
           MGKL+DNTISG LPT  +FAVHYPGYP SKRRAIETLGGTQSILK
Sbjct: 1   MGKLRDNTISGLLPTNHAFAVHYPGYPLSKRRAIETLGGTQSILK 45

[Close]
BLAST of Spg034954 vs. TAIR 10
Match: AT3G49410.1 (Transcription factor IIIC, subunit 5 )

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-10
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 110 MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKGGE 158
           MG +++ TISGTLP+  +F VH+PGYPSS  RAIETLGG Q I +  E
Sbjct: 1   MGIIEEGTISGTLPSKEAFVVHFPGYPSSISRAIETLGGIQGITQARE 48

[Close]
BLAST of Spg034954 vs. TAIR 10
Match: AT5G24450.1 (Transcription factor IIIC, subunit 5 )

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-10
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0 

Query: 110 MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKGGEVT 160
           MG +++ TISG LP+  +F VHYPGYPSS  RA+ETLGG Q I    E T
Sbjct: 1   MGIIENGTISGNLPSKEAFVVHYPGYPSSISRAVETLGGIQGITTAREST 50

The following BLAST results are available for this feature:
BLAST of Spg034954 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022989615.15.4e-1391.11general transcription factor 3C polypeptide 5-like [Cucurbita maxima] >XP_022989... [more]
XP_023530657.17.1e-1388.89general transcription factor 3C polypeptide 5-like [Cucurbita pepo subsp. pepo] ... [more]
XP_022927790.17.1e-1388.89general transcription factor 3C polypeptide 5-like [Cucurbita moschata] >XP_0229... [more]
KAG6588837.17.1e-1388.89General transcription factor 3C polypeptide 5, partial [Cucurbita argyrosperma s... [more]
KAG7022593.17.1e-1388.89General transcription factor 3C polypeptide 5, partial [Cucurbita argyrosperma s... [more]
BLAST of Spg034954 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg034954 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JKL22.6e-1391.11general transcription factor 3C polypeptide 5-like OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1EPX93.4e-1388.89general transcription factor 3C polypeptide 5-like OS=Cucurbita moschata OX=3662... [more]
A0A5D3DYQ37.6e-1383.33General transcription factor 3C polypeptide 5-like isoform X1 OS=Cucumis melo va... [more]
A0A1S3CMW81.0e-1286.67general transcription factor 3C polypeptide 5-like isoform X2 OS=Cucumis melo OX... [more]
A0A6J1DTW81.3e-1286.67general transcription factor 3C polypeptide 5-like isoform X1 OS=Momordica chara... [more]
BLAST of Spg034954 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G49410.11.6e-1060.42Transcription factor IIIC, subunit 5 [more]
AT5G24450.12.7e-1058.00Transcription factor IIIC, subunit 5 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042536TFIIIC, subcomplex tauA subunit Sfc1, triple barrel domain superfamilyGENE3D3.30.200.160TFIIIC, subcomplex tauA, subunit Sfc1, barrel domaincoord: 117..174
e-value: 5.4E-6
score: 28.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034954.1Spg034954.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006384 transcription initiation from RNA polymerase III promoter
cellular_component GO:0005634 nucleus
cellular_component GO:0000127 transcription factor TFIIIC complex
molecular_function GO:0003677 DNA binding