Spg034925 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034925
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMitochondrial import inner membrane translocase subunit TIM22-4-like
Locationscaffold3: 24277500 .. 24280827 (-)
RNA-Seq ExpressionSpg034925
SyntenySpg034925
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGCTTTGGCGGAAGAATAGAAGAAAACGAGCCAAGCTGCCCAAGACTGTATTCGTTGGCAAAAAGAAGGGAAAAGGAACTAAAAAATGGAGAAACCGCCGAAAAATACCAGGGAGATCCTTTTGTAAGCCATCAGAATGCGAAAACCATGTACGAATGGGCAAGGAGATCAGACATGGAGACTAGATTTCTGGAGTACGATCATTGGTCATCGGTGGTTTCGTGGCAAGAGATGAAGATTTGGAGAGAACATAGCACCGACCACAAAGTCAGGAAGAAGGTGGAAGGAAAAGAGAAGAAAAGGAGAATGGCCGACGACGGTCGTCACCGACAATGTCGACGTGTGTGGCCGGAGTTAAAGTTTTGGGTAATGTGTTGGCACAAAATATAATTAGTAAAAATATAGTAGAAGGAATAGAGGGGGACGACCATGAAGAAAACCAATCTGAAAGAAAACAAGTTCTGATGCCGGCAAAGTACGCAAACAATGATGACAATTTGTTGGTGGAGATGTAAACTGATTTTTCGTAAAGAAGTGGACAAAATAAACCCTAAATCACGTGCAGTGTCAGGAAATGGGGCCCCTAAGGTGTAATTAGGAATATTGGTAAGGGTATATTAGTAGTTAGTTAGGGAGTTGTTAGAGTATGAAGTTATAATTAGTGGGAGTGGGAAAAAGGGAAGATACGAAATGAAGTTAGTGAGTTACTCTTGTGTGTTCTCAAGAGAGGGAGGGTCCAAGTACCTCAAACACTTGGGTTTATCGTAATAATACATTGTAGTTCTATTTCTGTTCTTATCATATCTAAACTCAGAAAACATCCAAATACTAATATATTGCAACATTAAAGAGAAATTACAATATAACAATAGCCTTTTGAGAGGGCTATCTTTCTCCCAAAGTCCTACAATGAGAAAATACCCAAAATTCTCCACATCATCTAAAACTCTAAACTCTTGTTATGCCCCGTGTTTCAACTTAGACTATCGTTAGAGTCAATTTGTTCTTGAAATTGAAAATTGATAGATTCACTTAGAAGTCTGAGTTGCTTTTAGTTGTTGAAGTAAACTTTTTAGCTTTTCTTTTGGGTAGTATTTGATGTGAGGGCTGACTTGCTTTTGTTTGTGAGAAGTTGGGGTGCCTTGTGTTGTTCCCGAGTGTCGTGAGAATTTGCAGCTTGGGTATTTTGGTTATAGAAGTGCTATTATCTTGTCTTTCAAGTGTAAGAAAATTTTGGATTAGCTTTATCTATGTCGTTATGTTGGCAAAATTTTCAAAGCATCCAGTTAGCATTAAGGTAGACGTATTAGTAATGTCCTTAGATAGTTATAAACTCTAGGGGTGTTACAGTTGGTATCAGAGTGAAGTTGTTCTTGTAACTGACCTAGGAAAATTAGGTTGTTTAGTAGAGTAGGATTAGTGGTCTTCATCGTTCTCCTCCCCATCACTAGGTATGTTGGTTTAATGATATTATTATATAGTCCATTTGATTGAATCATATTCTTTGCATGGTATTTGCTTTGCTTGGATTGATTGAGTGAGGTAAATTATTGATCTAGCATGAAATTGTTTTGCTTGGAGTATTTGCCTTGCATGATTATTGTTTGACTTGCTTTGCATGCTTATTGACATGTTTGTCTTGTCTGAGCATGCTTGAGTTGAATGTTTGCCTTATTTTTGAATAGCTAGGCAAGCTGTTCCGTTTAGGTGGCTAGCTAGTGGTTTGTTCATTGTTTGCTAGTAGGAGTAGGATGCTCCCATAGTTAGCTAGATAACTTTTGATTCTCGTGTTTGTTGCTTGCTAGTAGGCATAGGATGCTGTCATAGTCGTGCTAGATAGTTTGCATTTTGTTTTTGTGTTGTTTGCTTCTAAGTCTAGGTTGTTGCCTTGGTTTGAGGATAGTTCTTCCGATTCAAGTTTGTAAGTGAGTTGGTTAAGCGAGTCCAATGTTTCCCTTCTAGGCGATGAGTTCTCGCGAGAATCAAGAAAGAAGTCGTTTTGGCTCTCCCGATATTCTAGAAGTCATCTCGCACCCAAGGGCGAATTTCTCCGTTCCCTCTCCCATGCCTCAAGCAACATTGACACTGGAAGCATGGTAAGCCATTATCGACAATGTAATCCAAAACAACTTGCAACACTTTGGTGTCAACCAAACTCCTGCACTCTATAGGGACGTTCAATTCCTCAGGAGCTTCAAGTAAGCAAAGCTCCTTCATTTGATGGTCAACTCGGTAGTTCAAAGGAATGGACCTCAGAGCTAGAGGCTTTGTTCGAGTATTTCTTATGCGTGTTTGGCATGTGCGAAACCTCCTCAATGCTCTTGAGGTGGATAATTTGAGGACTCACAACGAAACTTTGTTGGCTTAATGGTTATGGTCGTTCTCGTTCGAATCCAACACTCTTTGGTATAGGATCATTGTTAGCAAATACGGTCTCATCCTTTTGAATGGGTGTTGGGTGGGATCAAAGGCACTTCCAGAAACCCTTAGAAAGAGATCTCCTTAGAGCTCGCTTCTATGACTACTTTTATTCACACTTTGTGGGAAACGGGAGGAAACTTATTTTTGGGAAGATAGATGGGTGGGGAATAGACCTCTCTGTGCTATTTGTCTTCGACTTTCTCACTTATCCTCGATGAAAATTCATTCTAAGGTAGAGGTTTTGATTCATTTTGGGAGCTCTCCTTCCTATTCTTTTGGCTTCTATCATCCGTTATCTGATAGGGAAACTATGGATATCTTGGCTCTCCTTTCTTTGTTAGGGGGAATCACCATTAGACCGGATAGGAGGGATTGCTGATTGTGGAGCCCTAACCCCTCCCATAGGTTTTCTTGTCGTTCTTTTTTCCAATGCCTCTTGAATCCTTCTTCGACCGATGAGTCAATCTTTTCCTTGATATGGAGGTGAAAGTTCCAAAGAAGGTGCAATTTTTCATCTGGCGGGTTCTCCAAGGAGTTTCTACTCTTGATTAGCTATCGAGAAGGATGCCTACCTTGATCGGCTCGTTTTGTTGTATCCTTTGCCAGATGGCGGAGGAAGACCTTGATCACATTTTATGGAGATGCGATTTTTCTTGGTCGGTGTGGAACGTGCTCTTCAAGATGTTTGACTTGCAGTTTGACAGACACGAGCATCAGGGAAATGATCGAAGAGTTCGTTCCCCATTCTCCTTATCGAGAGAAGGGAAATTTCTTATGGCAGACGGGAATTTGTGCTATTGTTTGGGGGCTTTGGGGGGAGAGGAACAATAGAACTTTTAGAGGGTCAGAGAGGTGTCCTAATGATGTTTGGTCATTGGCTAAATACTATGTTTCTCTTTAG

mRNA sequence

ATGGTTGGCTTTGGCGGAAGAATAGAAGAAAACGAGCCAAGCTGCCCAAGACTGTATTCGTTGGCAAAAAGAAGGGAAAAGGAACTAAAAAATGGAGAAACCGCCGAAAAATACCAGGGAGATCCTTTTGTAAGCCATCAGAATGCGAAAACCATGTACGAATGGGCAAGGAGATCAGACATGGAGACTAGATTTCTGGAGTACGATCATTGGTCATCGGTGGTTTCGTGGCAAGAGATGAAGATTTGGAGAGAACATAGCACCGACCACAAAGTCAGGAAGAAGGTGGAAGGAAAAGAGAAGAAAAGGAGAATGGCCGACGACGGTCGTCACCGACAATGTCGACGTGTGTGGCCGGAGTTAAAGTTTTGGCTTGGGTATTTTGGTTATAGAAGTGCTATTATCTTGTCTTTCAAGTGCGATGAGTTCTCGCGAGAATCAAGAAAGAAGTCGTTTTGGCTCTCCCGATATTCTAGAAGTCATCTCGCACCCAAGGGCGAATTTCTCCGTTCCCTCTCCCATGCCTCAAGCAACATTGACACTGGAAGCATGGGACGTTCAATTCCTCAGGAGCTTCAAGTAAGCAAAGCTCCTTCATTTGATGGTCAACTCGGTAGTTCAAAGGAATGGACCTCAGAGCTAGAGGCTTTGTTCGAGTATTTCTTATGCGTGTTTGGCATGTGCGAAACCTCCTCAATGCTCTTGAGATGGCGGAGGAAGACCTTGATCACATTTTATGGAGATGCGATTTTTCTTGGTCGGTGTGGAACGTGCTCTTCAAGATGTTTGACTTGCAGTTTGACAGACACGAGCATCAGGGAAATGATCGAAGAGTTCGTTCCCCATTCTCCTTATCGAGAGAAGGGAAATTTCTTATGGCAGACGGGAATTTGTGCTATTGTTTGGGGGCTTTGGGGGGAGAGGAACAATAGAACTTTTAGAGGGTCAGAGAGGTGTCCTAATGATGTTTGGTCATTGGCTAAATACTATGTTTCTCTTTAG

Coding sequence (CDS)

ATGGTTGGCTTTGGCGGAAGAATAGAAGAAAACGAGCCAAGCTGCCCAAGACTGTATTCGTTGGCAAAAAGAAGGGAAAAGGAACTAAAAAATGGAGAAACCGCCGAAAAATACCAGGGAGATCCTTTTGTAAGCCATCAGAATGCGAAAACCATGTACGAATGGGCAAGGAGATCAGACATGGAGACTAGATTTCTGGAGTACGATCATTGGTCATCGGTGGTTTCGTGGCAAGAGATGAAGATTTGGAGAGAACATAGCACCGACCACAAAGTCAGGAAGAAGGTGGAAGGAAAAGAGAAGAAAAGGAGAATGGCCGACGACGGTCGTCACCGACAATGTCGACGTGTGTGGCCGGAGTTAAAGTTTTGGCTTGGGTATTTTGGTTATAGAAGTGCTATTATCTTGTCTTTCAAGTGCGATGAGTTCTCGCGAGAATCAAGAAAGAAGTCGTTTTGGCTCTCCCGATATTCTAGAAGTCATCTCGCACCCAAGGGCGAATTTCTCCGTTCCCTCTCCCATGCCTCAAGCAACATTGACACTGGAAGCATGGGACGTTCAATTCCTCAGGAGCTTCAAGTAAGCAAAGCTCCTTCATTTGATGGTCAACTCGGTAGTTCAAAGGAATGGACCTCAGAGCTAGAGGCTTTGTTCGAGTATTTCTTATGCGTGTTTGGCATGTGCGAAACCTCCTCAATGCTCTTGAGATGGCGGAGGAAGACCTTGATCACATTTTATGGAGATGCGATTTTTCTTGGTCGGTGTGGAACGTGCTCTTCAAGATGTTTGACTTGCAGTTTGACAGACACGAGCATCAGGGAAATGATCGAAGAGTTCGTTCCCCATTCTCCTTATCGAGAGAAGGGAAATTTCTTATGGCAGACGGGAATTTGTGCTATTGTTTGGGGGCTTTGGGGGGAGAGGAACAATAGAACTTTTAGAGGGTCAGAGAGGTGTCCTAATGATGTTTGGTCATTGGCTAAATACTATGTTTCTCTTTAG

Protein sequence

MVGFGGRIEENEPSCPRLYSLAKRREKELKNGETAEKYQGDPFVSHQNAKTMYEWARRSDMETRFLEYDHWSSVVSWQEMKIWREHSTDHKVRKKVEGKEKKRRMADDGRHRQCRRVWPELKFWLGYFGYRSAIILSFKCDEFSRESRKKSFWLSRYSRSHLAPKGEFLRSLSHASSNIDTGSMGRSIPQELQVSKAPSFDGQLGSSKEWTSELEALFEYFLCVFGMCETSSMLLRWRRKTLITFYGDAIFLGRCGTCSSRCLTCSLTDTSIREMIEEFVPHSPYREKGNFLWQTGICAIVWGLWGERNNRTFRGSERCPNDVWSLAKYYVSL
Homology
[Close]
BLAST of Spg034925 vs. NCBI nr
Match: TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-12
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 272 IREMIEEFVPHSPYREKGNFLWQTGICAIVWGLWGERNNRTFRGSERCPNDVWSLAKYYV 331
           +R M E F+ H P++EKG FLW   +CAI+W +WGERN+R FRG +R  +++ SL +++V
Sbjct: 310 VRAMTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERNDRVFRGKDRDLSEIGSLVRFHV 369

Query: 332 SL 334
           SL
Sbjct: 370 SL 371

[Close]
BLAST of Spg034925 vs. NCBI nr
Match: TYK23653.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 6.1e-12
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 275 MIEEFVPHSPYREKGNFLWQTGICAIVWGLWGERNNRTFRGSERCPNDVWSLAK 329
           +I EF+   P REKG FLW  G+CA++W LWGERNNR FRG ER P +VWSL +
Sbjct: 33  VIGEFLLRLPLREKGCFLWCVGVCAVIWNLWGERNNRVFRGVEREPCEVWSLVR 86

[Close]
BLAST of Spg034925 vs. NCBI nr
Match: KAA0066908.1 (mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 6.8e-11
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 271 SIREMIEEFVPHSPYREKGNFLWQTGICAIVWGLWGERNNRTFRGSERC 320
           S+R MIEEF+ HSP+R+KG+FLW  G+CA++W +WG+RN+R  RG   C
Sbjct: 345 SVRAMIEEFLLHSPFRDKGSFLWLAGVCAVMWDIWGKRNDRVLRGRRGC 393

[Close]
BLAST of Spg034925 vs. NCBI nr
Match: XP_016900613.1 (PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 7.5e-10
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 272 IREMIEEFVPHSPYREKGNFLWQTGICAIVWGLWGERNNRTFRGSERCPNDVWSLAKYYV 331
           +R MIEEF+ + P  E+G FLW+  +CAI+W LW E N R F G ER   ++W + +Y+V
Sbjct: 87  VRGMIEEFLLNLPCGERGRFLWRACVCAILWVLWDETNRRVFWGVERGTGEIWLVIRYHV 146

Query: 332 SL 334
           SL
Sbjct: 147 SL 148

[Close]
BLAST of Spg034925 vs. NCBI nr
Match: KAA0053637.1 (protein RST1 isoform X2 [Cucumis melo var. makuwa] >TYK00806.1 protein RST1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 3.1e-08
Identity = 33/96 (34.38%), Postives = 58/96 (60.42%), Query Frame = 0 

Query: 235 LRWRRKTLITFYGDAIFLGRCGTCSSRCLTCSLTDTSIREMIEEFVPHSPYREKGNFLWQ 294
           LR RR+    ++G   FL + G+ S +          +R  IEEF+ H P+RE+G+ LW 
Sbjct: 825 LRERRR---DWFGGPRFLRKFGSSSDKFYWV----RGVRATIEEFLLHLPFRERGDILWI 884

Query: 295 TGICAIVWGLWGERNNRTFRGSERCPNDVWSLAKYY 331
           TG+C I+W ++G+RN++ F G ER  +++ ++  ++
Sbjct: 885 TGVCPILWDIFGKRNDQVFHGRERDHSELLAIFFFF 913

[Close]
BLAST of Spg034925 vs. ExPASy TrEMBL
Match: A0A5D3D7T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00660 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-12
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 272 IREMIEEFVPHSPYREKGNFLWQTGICAIVWGLWGERNNRTFRGSERCPNDVWSLAKYYV 331
           +R M E F+ H P++EKG FLW   +CAI+W +WGERN+R FRG +R  +++ SL +++V
Sbjct: 310 VRAMTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERNDRVFRGKDRDLSEIGSLVRFHV 369

Query: 332 SL 334
           SL
Sbjct: 370 SL 371

[Close]
BLAST of Spg034925 vs. ExPASy TrEMBL
Match: A0A5D3DJ76 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-12
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 275 MIEEFVPHSPYREKGNFLWQTGICAIVWGLWGERNNRTFRGSERCPNDVWSLAK 329
           +I EF+   P REKG FLW  G+CA++W LWGERNNR FRG ER P +VWSL +
Sbjct: 33  VIGEFLLRLPLREKGCFLWCVGVCAVIWNLWGERNNRVFRGVEREPCEVWSLVR 86

[Close]
BLAST of Spg034925 vs. ExPASy TrEMBL
Match: A0A5A7VGR5 (Mitochondrial phosphate carrier protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00280 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-11
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 271 SIREMIEEFVPHSPYREKGNFLWQTGICAIVWGLWGERNNRTFRGSERC 320
           S+R MIEEF+ HSP+R+KG+FLW  G+CA++W +WG+RN+R  RG   C
Sbjct: 345 SVRAMIEEFLLHSPFRDKGSFLWLAGVCAVMWDIWGKRNDRVLRGRRGC 393

[Close]
BLAST of Spg034925 vs. ExPASy TrEMBL
Match: A0A1S4DXB1 (uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-10
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 272 IREMIEEFVPHSPYREKGNFLWQTGICAIVWGLWGERNNRTFRGSERCPNDVWSLAKYYV 331
           +R MIEEF+ + P  E+G FLW+  +CAI+W LW E N R F G ER   ++W + +Y+V
Sbjct: 87  VRGMIEEFLLNLPCGERGRFLWRACVCAILWVLWDETNRRVFWGVERGTGEIWLVIRYHV 146

Query: 332 SL 334
           SL
Sbjct: 147 SL 148

[Close]
BLAST of Spg034925 vs. ExPASy TrEMBL
Match: A0A5D3BRC0 (Protein RST1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00070 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-08
Identity = 33/96 (34.38%), Postives = 58/96 (60.42%), Query Frame = 0 

Query: 235 LRWRRKTLITFYGDAIFLGRCGTCSSRCLTCSLTDTSIREMIEEFVPHSPYREKGNFLWQ 294
           LR RR+    ++G   FL + G+ S +          +R  IEEF+ H P+RE+G+ LW 
Sbjct: 825 LRERRR---DWFGGPRFLRKFGSSSDKFYWV----RGVRATIEEFLLHLPFRERGDILWI 884

Query: 295 TGICAIVWGLWGERNNRTFRGSERCPNDVWSLAKYY 331
           TG+C I+W ++G+RN++ F G ER  +++ ++  ++
Sbjct: 885 TGVCPILWDIFGKRNDQVFHGRERDHSELLAIFFFF 913

The following BLAST results are available for this feature:
BLAST of Spg034925 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK19563.12.1e-1250.00uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa][more]
TYK23653.16.1e-1261.11SIL1 [Cucumis melo var. makuwa][more]
KAA0066908.16.8e-1157.14mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa][more]
XP_016900613.17.5e-1048.39PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo][more]
KAA0053637.13.1e-0834.38protein RST1 isoform X2 [Cucumis melo var. makuwa] >TYK00806.1 protein RST1 isof... [more]
BLAST of Spg034925 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg034925 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D7T21.0e-1250.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DJ763.0e-1261.11SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1[more]
A0A5A7VGR53.3e-1157.14Mitochondrial phosphate carrier protein 3 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A1S4DXB13.6e-1048.39uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=... [more]
A0A5D3BRC01.5e-0834.38Protein RST1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg034925 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034925.1Spg034925.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1990547 mitochondrial phosphate ion transmembrane transport
biological_process GO:0090304 nucleic acid metabolic process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0031967 organelle envelope
molecular_function GO:0140657 ATP-dependent activity
molecular_function GO:0005488 binding
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid
molecular_function GO:0005315 inorganic phosphate transmembrane transporter activity
molecular_function GO:0008233 peptidase activity