Spg034863 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034863
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold3: 26114963 .. 26116895 (+)
RNA-Seq ExpressionSpg034863
SyntenySpg034863
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAAACGAGAGCAAGAAAAGAGCGAGACAATGAGGAGGAGGAGGTGTCTGTTTCCCCCGAAGCACAGAAAGTGAAAAAGAAAAAGAAAACGACGGAGGAAAAAGAAGCCAAAAGAAGGAGAAGGCAACAGAGGGTTGAGGATCAAGAAATTGTACATAAGGTAGTGGAAGATGTTGTTGCTACGATAGTTGAAGAAGAAAATCCGAAGGAACCAGAAGGACAGAACACTGAGCCGTTTGACACGATAGTTCCGGATACGGAGGGAGTTCAAGAAGAGCACACAAAGGATGTTCAGGAAACAGGCAATGAGCAGGTGGAACAAGAGCAGGAGGCTCGAGTGGAAGTGATCATGCTGGAAGTGCCAAAACGTCGCCGCGTAAAGCGAAAAGCTGGACACGTCAAGGTAGTCCGAACTGATACCCCATCACCACCGTAGTCCGAACTGATACCCCACCACCACCGTCGACGGATTCTGAGAAAAAGAATGCAGGAAGAGAGGAACAGGAGAAAAAAGAGGCTGAGGACAGAGCGAGAGAGGAAGCAAGAAAGAAAGCAGCGAAAGAAACTTTGACAAAGCATCAGGAAGACAGAGGCAAAGGAATTGCTGAAGCATCGGATGAACCTATAGAGGAAACAGAAGAAGGACCATTCATCCACTTCGTCAATGAACTTGCCCGAGCAAAATATCAGCAGATGTTAAAAAGGGATTTCTTATTCGAAAGAGGGTTTGGTGACGATCTGCCACATTTCTTAAGGGCAGGGATCGCGAATCACGACTGGAGTCAGTTCTGTGCGAAACCGGACCCAGTGAATTCGAACATTGTTCGAGAGTTTTATGTGAATGTTTATAATGCAGAGGAATTTCAGGTCATAGTCCAAGGAGTGAGTGTTGATTGGAGCCTTGGAGCTATTAATTCATTATTCAACCTCTAGGACTTCCCACATGCACGCTTCAATGAGATGGTGGTGGCACCATCGAGTGATCAGTTAAATGCGGCGGTCCGAGAGGTTGGCATTGAGGGCAGGGATCGCGAATCACGACTGGAGTCAGTTCTGTGCGAAACCGGACCCAGTGAATTCGAACATTGTTCGAGAGTTTTATGTGAATGTTTATAATGCAGAGGAATTTCAGGCCATAGTCCAAGGAGTGACTGTTGATTGGAGCCTTGGAGCTATTAATTCATTATTCAACCTCTAGGACTTCCCACATGCACGCTTCAATGAGATGGTGGTGGCACCATCGAGTGATCAGTTAAATGCGGCGGTCCGAGAGGTTGGCATTGAGGGGGCTCAGTGGAGGCTATCAAAGACGGAGAAACGAACATTTCAAGCTGCCTATCTAAAGAGTGAAGCCAATACTTGGTTGGGCTTCATCAAGCTATGTTTGCTTCCAACTACGCATGATTCAAACAGTGTCTCGCAACCGAGTGCTTCTGATATTCACAATTCTTCGATCCTTAAGTATTGATGTTGGAAAAATAATTTCGAATGAAATCTTTAGTTGCTGGCGCAAAAAGGTGGGGAAGTTGTTTTTCCCGAACACGATCACGATGTTGTGCAGCAGGGCAGGAGTGACCACGGTTCCAGAGGATGTGATTTTGCTGGACAAGGGAATCATTGATACGCCTAATCTGGCTCGGCTTCAGCGTACGCAAGAGGCACGCCAGGGTGGGTTAGTGTGTGGAATTCATGAAATCCTAGAGCAACTGGCACTGTCGGCCAGTAGGCAAGAGTTTGCTGAAAGGCAAGCTCAAACCTATTGGACCTATGCTAAAAGGAGAGATGACACACTTCAGAGGGCCTTGCAATCCAATTTCTCCAAACCATATCAGGCCTTCCCTATGTTTCCCGATGATTTATTTAACCTTTGGATACCGCCCCCACACGTCGAAAGAGAAGAAGAGGATGATGAAAATGAGCAGGGTTAG

mRNA sequence

ATGGCGAAAACGAGAGCAAGAAAAGAGCGAGACAATGAGGAGGAGGAGGTGTCTGTTTCCCCCGAAGCACAGAAAGTGAAAAAGAAAAAGAAAACGACGGAGGAAAAAGAAGCCAAAAGAAGGAGAAGGCAACAGAGGGTTGAGGATCAAGAAATTGTACATAAGGTAGTGGAAGATGTTGTTGCTACGATAGTTGAAGAAGAAAATCCGAAGGAACCAGAAGGACAGAACACTGAGCCGTTTGACACGATAGTTCCGGATACGGAGGGAGTTCAAGAAGAGCACACAAAGGATGTTCAGGAAACAGGCAATGAGCAGGTGGAACAAGAGCAGGAGGCTCGAGTGGAAGTGATCATGCTGGAAGTGCCAAAACGTCGCCGCGTAAAGCGAAAAGCTGGACACGTCAAGGAGAAAAAAGAGGCTGAGGACAGAGCGAGAGAGGAAGCAAGAAAGAAAGCAGCGAAAGAAACTTTGACAAAGCATCAGGAAGACAGAGGCAAAGGAATTGCTGAAGCATCGGATGAACCTATAGAGGAAACAGAAGAAGGACCATTCATCCACTTCGTCAATGAACTTGCCCGAGCAAAATATCAGCAGATGTTAAAAAGGGATTTCTTATTCGAAAGAGGGTTTGGTGACGATCTGCCACATTTCTTAAGGGCAGGGATCGCGAATCACGACTGGAGTCAGTTCTGTGCGAAACCGGACCCAGTGAATTCGAACATTGTTCGAGAGTTTTATGTGAATGTTTATAATGCAGAGGAATTTCAGGACTTCCCACATGCACGCTTCAATGAGATGGTGGTGGCACCATCGAGTGATCAGTTAAATGCGGCGGTCCGAGAGGTTGGCATTGAGGGCAGGGATCGCGAATCACGACTGGAGTCAGACTTCCCACATGCACGCTTCAATGAGATGGTGGTGGCACCATCGAGTGATCAGTTAAATGCGGCGGTCCGAGAGGTTGGCATTGAGGGGGCTCAGTGGAGGCTATCAAAGACGGAGAAACGAACATTTCAAGCTGCCTATCTAAAGAGTGAAGCCAATACTTGGTTGGGCTTCATCAAGCTATGTTTGCTTCCAACTACGCATGATTCAAACAGTGTCTCGCAACCGAGTGCTTCTGATATTCACAATTCTTCGATCCTTAACAGGGCAGGAGTGACCACGGTTCCAGAGGATGTGATTTTGCTGGACAAGGGAATCATTGATACGCCTAATCTGGCTCGGCTTCAGCGTACGCAAGAGGCACGCCAGGGTGGGTTAGTGTGTGGAATTCATGAAATCCTAGAGCAACTGGCACTGTCGGCCAGTAGGCAAGAGTTTGCTGAAAGGCAAGCTCAAACCTATTGGACCTATGCTAAAAGGAGAGATGACACACTTCAGAGGGCCTTGCAATCCAATTTCTCCAAACCATATCAGGCCTTCCCTATGTTTCCCGATGATTTATTTAACCTTTGGATACCGCCCCCACACGTCGAAAGAGAAGAAGAGGATGATGAAAATGAGCAGGGTTAG

Coding sequence (CDS)

ATGGCGAAAACGAGAGCAAGAAAAGAGCGAGACAATGAGGAGGAGGAGGTGTCTGTTTCCCCCGAAGCACAGAAAGTGAAAAAGAAAAAGAAAACGACGGAGGAAAAAGAAGCCAAAAGAAGGAGAAGGCAACAGAGGGTTGAGGATCAAGAAATTGTACATAAGGTAGTGGAAGATGTTGTTGCTACGATAGTTGAAGAAGAAAATCCGAAGGAACCAGAAGGACAGAACACTGAGCCGTTTGACACGATAGTTCCGGATACGGAGGGAGTTCAAGAAGAGCACACAAAGGATGTTCAGGAAACAGGCAATGAGCAGGTGGAACAAGAGCAGGAGGCTCGAGTGGAAGTGATCATGCTGGAAGTGCCAAAACGTCGCCGCGTAAAGCGAAAAGCTGGACACGTCAAGGAGAAAAAAGAGGCTGAGGACAGAGCGAGAGAGGAAGCAAGAAAGAAAGCAGCGAAAGAAACTTTGACAAAGCATCAGGAAGACAGAGGCAAAGGAATTGCTGAAGCATCGGATGAACCTATAGAGGAAACAGAAGAAGGACCATTCATCCACTTCGTCAATGAACTTGCCCGAGCAAAATATCAGCAGATGTTAAAAAGGGATTTCTTATTCGAAAGAGGGTTTGGTGACGATCTGCCACATTTCTTAAGGGCAGGGATCGCGAATCACGACTGGAGTCAGTTCTGTGCGAAACCGGACCCAGTGAATTCGAACATTGTTCGAGAGTTTTATGTGAATGTTTATAATGCAGAGGAATTTCAGGACTTCCCACATGCACGCTTCAATGAGATGGTGGTGGCACCATCGAGTGATCAGTTAAATGCGGCGGTCCGAGAGGTTGGCATTGAGGGCAGGGATCGCGAATCACGACTGGAGTCAGACTTCCCACATGCACGCTTCAATGAGATGGTGGTGGCACCATCGAGTGATCAGTTAAATGCGGCGGTCCGAGAGGTTGGCATTGAGGGGGCTCAGTGGAGGCTATCAAAGACGGAGAAACGAACATTTCAAGCTGCCTATCTAAAGAGTGAAGCCAATACTTGGTTGGGCTTCATCAAGCTATGTTTGCTTCCAACTACGCATGATTCAAACAGTGTCTCGCAACCGAGTGCTTCTGATATTCACAATTCTTCGATCCTTAACAGGGCAGGAGTGACCACGGTTCCAGAGGATGTGATTTTGCTGGACAAGGGAATCATTGATACGCCTAATCTGGCTCGGCTTCAGCGTACGCAAGAGGCACGCCAGGGTGGGTTAGTGTGTGGAATTCATGAAATCCTAGAGCAACTGGCACTGTCGGCCAGTAGGCAAGAGTTTGCTGAAAGGCAAGCTCAAACCTATTGGACCTATGCTAAAAGGAGAGATGACACACTTCAGAGGGCCTTGCAATCCAATTTCTCCAAACCATATCAGGCCTTCCCTATGTTTCCCGATGATTTATTTAACCTTTGGATACCGCCCCCACACGTCGAAAGAGAAGAAGAGGATGATGAAAATGAGCAGGGTTAG

Protein sequence

MAKTRARKERDNEEEEVSVSPEAQKVKKKKKTTEEKEAKRRRRQQRVEDQEIVHKVVEDVVATIVEEENPKEPEGQNTEPFDTIVPDTEGVQEEHTKDVQETGNEQVEQEQEARVEVIMLEVPKRRRVKRKAGHVKEKKEAEDRAREEARKKAAKETLTKHQEDRGKGIAEASDEPIEETEEGPFIHFVNELARAKYQQMLKRDFLFERGFGDDLPHFLRAGIANHDWSQFCAKPDPVNSNIVREFYVNVYNAEEFQDFPHARFNEMVVAPSSDQLNAAVREVGIEGRDRESRLESDFPHARFNEMVVAPSSDQLNAAVREVGIEGAQWRLSKTEKRTFQAAYLKSEANTWLGFIKLCLLPTTHDSNSVSQPSASDIHNSSILNRAGVTTVPEDVILLDKGIIDTPNLARLQRTQEARQGGLVCGIHEILEQLALSASRQEFAERQAQTYWTYAKRRDDTLQRALQSNFSKPYQAFPMFPDDLFNLWIPPPHVEREEEDDENEQG
Homology
BLAST of Spg034863 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-12
Identity = 91/365 (24.93%), Postives = 142/365 (38.90%), Query Frame = 0

Query: 186 IHFVNELARAKYQQMLK-RDFLFERGFGDD-------LPHFLRAGIANHDWSQFCAKPDP 245
           + F  E A  +Y+  ++ R    E+GF  D       LP F+   I  H+W QFCA P+ 
Sbjct: 23  VKFETEAAATRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPED 82

Query: 246 VNSNIVREFYVNVYNAEEFQDFPHARFNEMVVAPSSDQLNAAVREVGIEGRDRESRLESD 305
               +VREFY N+ + EE   +       + V+ S + +NA     G+            
Sbjct: 83  PIVPLVREFYANLTDPEENTVYVRG----VQVSWSEEAINAV---FGLGD---------- 142

Query: 306 FPHARFNEMVVAPSSDQLNAAVREVGIEGAQWRLSKTEKRTFQAAYLKSEANTWLGFIKL 365
            P    +E +   +   L   +  V   GA+W +S     T   + L   A  W  F+K 
Sbjct: 143 -PVDEHSEFIQNITQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKS 202

Query: 366 CLLPTTHDSNSVSQPSASDIHNSSI------------------LNRAGVTTVPEDVILL- 425
            LLPTTH   +VS+     +H+  I                    + G    P  +  L 
Sbjct: 203 RLLPTTH-GKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLC 262

Query: 426 ---------------DKGIIDTPNLARL------QRTQEA-----------RQGGLVCGI 484
                          + G ID   +AR+      + TQ+            R  G +   
Sbjct: 263 RNARAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQ 322

BLAST of Spg034863 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 70.1 bits (170), Expect = 6.2e-08
Identity = 77/290 (26.55%), Postives = 116/290 (40.00%), Query Frame = 0

Query: 242 IVREFYVNVYNAEEFQDFPHARFNEMVVAPSSDQLNAAVREVGIEGRDRESRLESDFPHA 301
           +VREFY N+ + EE   +       + V+ S + +NA     G+     E        H+
Sbjct: 16  LVREFYANLTDPEENTIYVRG----VQVSWSEEAINAV---FGLGDPVDE--------HS 75

Query: 302 RFNEMVVAPSSDQLNAAVREVGIEGAQWRLSKTEKRTFQAAYLKSEANTWLGFIKLCLLP 361
            F E +  P   +L   +  V   GA+W +S     T   + L   A  W  F+K  LLP
Sbjct: 76  EFIENITEP---ELITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLP 135

Query: 362 TTHDS--------------NSVSQPSASDIHN---SSILNRAGVTTVPEDVILL------ 421
           TTH                N  S      IH+   +    + G    P  +  L      
Sbjct: 136 TTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNAPF 195

Query: 422 --------DKGIIDTPNLARL------QRTQE-----------ARQGGLVCGIHEILEQL 481
                   + G ID   +AR+      + TQ+           +R  G V    + LEQ 
Sbjct: 196 LVNEEKLHNTGEIDAIAVARITQEGPTESTQQPSSSRPAAASSSRTNGDVLQQLKALEQ- 255

Query: 482 ALSASRQEFAERQAQTYWTYAKRRDDTLQRALQSNFSKPYQAFPMFPDDL 484
               S+QE   +Q Q +W Y+K RD  L++ALQ+NF++P   FP FP ++
Sbjct: 256 --RLSQQEHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPAFPQEI 284

BLAST of Spg034863 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.9e-13
Identity = 91/365 (24.93%), Postives = 142/365 (38.90%), Query Frame = 0

Query: 186 IHFVNELARAKYQQMLK-RDFLFERGFGDD-------LPHFLRAGIANHDWSQFCAKPDP 245
           + F  E A  +Y+  ++ R    E+GF  D       LP F+   I  H+W QFCA P+ 
Sbjct: 23  VKFETEAAATRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPED 82

Query: 246 VNSNIVREFYVNVYNAEEFQDFPHARFNEMVVAPSSDQLNAAVREVGIEGRDRESRLESD 305
               +VREFY N+ + EE   +       + V+ S + +NA     G+            
Sbjct: 83  PIVPLVREFYANLTDPEENTVYVRG----VQVSWSEEAINAV---FGLGD---------- 142

Query: 306 FPHARFNEMVVAPSSDQLNAAVREVGIEGAQWRLSKTEKRTFQAAYLKSEANTWLGFIKL 365
            P    +E +   +   L   +  V   GA+W +S     T   + L   A  W  F+K 
Sbjct: 143 -PVDEHSEFIQNITQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKS 202

Query: 366 CLLPTTHDSNSVSQPSASDIHNSSI------------------LNRAGVTTVPEDVILL- 425
            LLPTTH   +VS+     +H+  I                    + G    P  +  L 
Sbjct: 203 RLLPTTH-GKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLC 262

Query: 426 ---------------DKGIIDTPNLARL------QRTQEA-----------RQGGLVCGI 484
                          + G ID   +AR+      + TQ+            R  G +   
Sbjct: 263 RNARAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQ 322

BLAST of Spg034863 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-08
Identity = 77/290 (26.55%), Postives = 116/290 (40.00%), Query Frame = 0

Query: 242 IVREFYVNVYNAEEFQDFPHARFNEMVVAPSSDQLNAAVREVGIEGRDRESRLESDFPHA 301
           +VREFY N+ + EE   +       + V+ S + +NA     G+     E        H+
Sbjct: 16  LVREFYANLTDPEENTIYVRG----VQVSWSEEAINAV---FGLGDPVDE--------HS 75

Query: 302 RFNEMVVAPSSDQLNAAVREVGIEGAQWRLSKTEKRTFQAAYLKSEANTWLGFIKLCLLP 361
            F E +  P   +L   +  V   GA+W +S     T   + L   A  W  F+K  LLP
Sbjct: 76  EFIENITEP---ELITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLP 135

Query: 362 TTHDS--------------NSVSQPSASDIHN---SSILNRAGVTTVPEDVILL------ 421
           TTH                N  S      IH+   +    + G    P  +  L      
Sbjct: 136 TTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNAPF 195

Query: 422 --------DKGIIDTPNLARL------QRTQE-----------ARQGGLVCGIHEILEQL 481
                   + G ID   +AR+      + TQ+           +R  G V    + LEQ 
Sbjct: 196 LVNEEKLHNTGEIDAIAVARITQEGPTESTQQPSSSRPAAASSSRTNGDVLQQLKALEQ- 255

Query: 482 ALSASRQEFAERQAQTYWTYAKRRDDTLQRALQSNFSKPYQAFPMFPDDL 484
               S+QE   +Q Q +W Y+K RD  L++ALQ+NF++P   FP FP ++
Sbjct: 256 --RLSQQEHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPAFPQEI 284

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON46472.11.4e-1224.93hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON78020.16.2e-0826.55hypothetical protein PanWU01x14_023740 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5BCG46.9e-1324.93Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5DXM33.0e-0826.55Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 135..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034863.1Spg034863.1mRNA