Spg034839 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034839
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	COP9 signalosome complex subunit 8-like
Location	scaffold3: 27522187 .. 27522947 (-)
RNA-Seq Expression	Spg034839
Synteny	Spg034839

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTCTCAACCAATGTGAGAGTTTAACATGGTCTTCAGTTTTCTTTGGAAATGTTCTCGAGGAAATATGAATTATTTCTTGGCTCAGAATTTTTGTTCTCTTTAAAAAGATAGAACAATATGGTTAAAATTGTCCAGTCGATGTTTCTAAGAAATATACTTTAGTTGTTTAATTTTCATTTTCATTTATCTGTCATCCTTTTTAAACTTGCAGTTAGGGCTAGTGTTACGTTGGAATTTGTTTCGAAATACATTGGTTTTCATTTGGTCATCGGCTCTTTTTTGTACTTCTATTTCATTCTCTTCTACACCTATCTCATTTTGGTGGGGTAAGTCCATATGTAAATTATTTATAGATTTTTAGACTCACTGTTCAATTTTGTTTTCGATTTTTTTGTTCATTCCTTTTCCCTCCTTTGTTCTTTCATTCAATTTTGTGGTCGAATCTTTTCATAATTTGATTCATATCATAACTCTTGGTTGAAGTTGAGTTTCCTTATCCAGATTTGTGGATTATCAGCTGCCTGTTAACTCTGTTAACTGTTAAGTGGTTTATTGCAGCAATAGTGCTCGATTTCTCTGGAAAGCAATACCTTCCACTATAAAAGAGAACCGACCAGAACTTGTTGCAGTTTGGAAAATTGGCCAAAAGCTATGGGTTCGGGACCATGGGGGTGTTTATGAGGCTATTCATGGTTTTGATTGGTCCCAAGAAGTTCAAGGCCTATTAGCTGCATTTTCAGGCAAGTCTCTTTAA

mRNA sequence

ATGAAAATTCTCAACCAATTTAGGGCTAGTGTTACGTTGGAATTTGTTTCGAAATACATTGGTTTTCATTTGGTCATCGGCTCTTTTTTCAATAGTGCTCGATTTCTCTGGAAAGCAATACCTTCCACTATAAAAGAGAACCGACCAGAACTTGTTGCAGTTTGGAAAATTGGCCAAAAGCTATGGGTTCGGGACCATGGGGGTGTTTATGAGGCTATTCATGGTTTTGATTGGTCCCAAGAAGTTCAAGGCCTATTAGCTGCATTTTCAGGCAAGTCTCTTTAA

Coding sequence (CDS)

ATGAAAATTCTCAACCAATTTAGGGCTAGTGTTACGTTGGAATTTGTTTCGAAATACATTGGTTTTCATTTGGTCATCGGCTCTTTTTTCAATAGTGCTCGATTTCTCTGGAAAGCAATACCTTCCACTATAAAAGAGAACCGACCAGAACTTGTTGCAGTTTGGAAAATTGGCCAAAAGCTATGGGTTCGGGACCATGGGGGTGTTTATGAGGCTATTCATGGTTTTGATTGGTCCCAAGAAGTTCAAGGCCTATTAGCTGCATTTTCAGGCAAGTCTCTTTAA

Protein sequence

MKILNQFRASVTLEFVSKYIGFHLVIGSFFNSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAAFSGKSL

Homology

[Close]

BLAST of Spg034839 vs. NCBI nr
Match: KAG7022587.1 (COP9 signalosome complex subunit 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.4 bits (337), Expect = 5.0e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 31  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAAFS 90
           NSARFLWKAIPSTIKENRPELVAVWKIGQKLW+RDHGGVYEAI GFDWSQEV+GLLAAFS
Sbjct: 61  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS 120

Query: 91  GKSL 95
           GKSL
Sbjct: 121 GKSL 124

[Close]

BLAST of Spg034839 vs. NCBI nr
Match: KAG6588823.1 (COP9 signalosome complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-25
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 31  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAAFS 90
           NSARFLWKAIPSTIKENRPELVAVWKIGQKLW+RDHGGVYEAI GFDWSQEV+GLLAAFS
Sbjct: 56  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS 115

[Close]

BLAST of Spg034839 vs. NCBI nr
Match: XP_022927899.1 (COP9 signalosome complex subunit 8-like [Cucurbita moschata])

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-25
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 31  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAAFS 90
           NSARFLWKAIPSTIKENRPELVAVWKIGQKLW+RDHGGVYEAI GFDWSQEV+GLLAAFS
Sbjct: 56  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS 115

[Close]

BLAST of Spg034839 vs. NCBI nr
Match: XP_023531250.1 (COP9 signalosome complex subunit 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 4.0e-25
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 31  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAAFS 90
           NSARFLWKAIPSTIKENRPELVAVWKIGQKLW+RDHGGVYEAI GFDW QEV+GLLAAFS
Sbjct: 56  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWCQEVRGLLAAFS 115

[Close]

BLAST of Spg034839 vs. NCBI nr
Match: XP_022989724.1 (COP9 signalosome complex subunit 8-like [Cucurbita maxima])

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-24
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 31  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAAFS 90
           NSARFLWKAIPSTIKENRPELVAVWKIGQKLW+RD+GGVYEAI GFDW QEV+GLLAAFS
Sbjct: 56  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDYGGVYEAIDGFDWCQEVRGLLAAFS 115

[Close]

BLAST of Spg034839 vs. ExPASy Swiss-Prot
Match: P43255 (COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana OX=3702 GN=CSN8 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-19
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 25  VIGSFF----NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQ 84
           ++G F+    +SARFLWK IP+ IKE +PE+VA W IGQKLW  D+ GVYEAI G+DWSQ
Sbjct: 46  LLGYFYVDDCDSARFLWKRIPTAIKERKPEVVAAWGIGQKLWTHDYAGVYEAIRGYDWSQ 105

Query: 85  EVQGLLAAFS 91
           E + ++AAFS
Sbjct: 106 EAKDMVAAFS 115

[Close]

BLAST of Spg034839 vs. ExPASy Swiss-Prot
Match: Q6GQA6 (COP9 signalosome complex subunit 8 OS=Xenopus laevis OX=8355 GN=csn8 PE=2 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-12
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 31  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAA 89
           N+AR+LWK IPS IK +  EL  +W++GQK+W RD  G+Y +I  + WS+ +Q ++ A
Sbjct: 53  NNARYLWKRIPSAIKSSHSELGGIWEVGQKIWQRDFPGIYTSISAYQWSENIQQIMEA 110

[Close]

BLAST of Spg034839 vs. ExPASy Swiss-Prot
Match: Q7ZUZ0 (COP9 signalosome complex subunit 8 OS=Danio rerio OX=7955 GN=cops8 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.0e-12
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 31  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAA 89
           N+AR+LWK IP  IK   PE+ A+W +GQ++W RD  G+Y AI  + WS+ +  ++ A
Sbjct: 49  NNARYLWKRIPQAIKTANPEMAAIWAVGQRIWQRDFPGIYSAIAAYQWSESILPVMEA 106

[Close]

BLAST of Spg034839 vs. ExPASy Swiss-Prot
Match: Q99627 (COP9 signalosome complex subunit 8 OS=Homo sapiens OX=9606 GN=COPS8 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-11
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 31  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAA 89
           N+AR+LWK IP  IK    EL  +W +GQ++W RD  G+Y  I+   WS+ VQ ++ A
Sbjct: 51  NNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEA 108

[Close]

BLAST of Spg034839 vs. ExPASy Swiss-Prot
Match: Q8VBV7 (COP9 signalosome complex subunit 8 OS=Mus musculus OX=10090 GN=Cops8 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-11
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 31  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAA 89
           N+AR+LWK IP  IK    EL  +W +GQ++W RD  G+Y  I+   WS+ VQ ++ A
Sbjct: 51  NNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEA 108

[Close]

BLAST of Spg034839 vs. ExPASy TrEMBL
Match: A0A0A0KJG9 (CSN8_PSD8_EIF3K domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G411200 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 31  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAAFS 90
           NSARFLWK+IPSTIKENRPELVA+WKIGQKLWVRDH GVYEAIH  DW QEVQGLLAAFS
Sbjct: 56  NSARFLWKSIPSTIKENRPELVAIWKIGQKLWVRDHRGVYEAIHELDWCQEVQGLLAAFS 115

Query: 91  GKSL 95
           GKSL
Sbjct: 116 GKSL 119

[Close]

BLAST of Spg034839 vs. ExPASy TrEMBL
Match: A0A6J1EJA8 (COP9 signalosome complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC111434662 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.1e-26
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 31  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAAFS 90
           NSARFLWKAIPSTIKENRPELVAVWKIGQKLW+RDHGGVYEAI GFDWSQEV+GLLAAFS
Sbjct: 56  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS 115

[Close]

BLAST of Spg034839 vs. ExPASy TrEMBL
Match: A0A6J1JQ49 (COP9 signalosome complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC111486724 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 9.5e-25
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 31  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAAFS 90
           NSARFLWKAIPSTIKENRPELVAVWKIGQKLW+RD+GGVYEAI GFDW QEV+GLLAAFS
Sbjct: 56  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDYGGVYEAIDGFDWCQEVRGLLAAFS 115

[Close]

BLAST of Spg034839 vs. ExPASy TrEMBL
Match: A0A7J6FZS2 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_018920 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.6e-24
Identity = 52/64 (81.25%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 31  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAAFS 90
           NSARFLWK+IP+ IK+N+PEL+A WKIGQKLWVRD+GGV+EAI GFDWSQ+VQGL+AAFS
Sbjct: 56  NSARFLWKSIPAAIKDNQPELLAAWKIGQKLWVRDYGGVHEAIRGFDWSQQVQGLVAAFS 115

Query: 91  GKSL 95
           GKSL
Sbjct: 116 GKSL 119

[Close]

BLAST of Spg034839 vs. ExPASy TrEMBL
Match: A0A7J6FGG7 (CSN8_PSD8_EIF3K domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_022115 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.6e-24
Identity = 52/64 (81.25%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 31  NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQEVQGLLAAFS 90
           NSARFLWK+IP+ IK+N+PEL+A WKIGQKLWVRD+GGV+EAI GFDWSQ+VQGL+AAFS
Sbjct: 56  NSARFLWKSIPAAIKDNQPELLAAWKIGQKLWVRDYGGVHEAIRGFDWSQQVQGLVAAFS 115

Query: 91  GKSL 95
           GKSL
Sbjct: 116 GKSL 119

[Close]

BLAST of Spg034839 vs. TAIR 10
Match: AT4G14110.1 (COP9 signalosome, subunit CSN8 )

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-20
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 25  VIGSFF----NSARFLWKAIPSTIKENRPELVAVWKIGQKLWVRDHGGVYEAIHGFDWSQ 84
           ++G F+    +SARFLWK IP+ IKE +PE+VA W IGQKLW  D+ GVYEAI G+DWSQ
Sbjct: 46  LLGYFYVDDCDSARFLWKRIPTAIKERKPEVVAAWGIGQKLWTHDYAGVYEAIRGYDWSQ 105

Query: 85  EVQGLLAAFS 91
           E + ++AAFS
Sbjct: 106 EAKDMVAAFS 115

The following BLAST results are available for this feature:

BLAST of Spg034839 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022587.1	5.0e-28	95.31	COP9 signalosome complex subunit 8, partial [Cucurbita argyrosperma subsp. argyr...	[more]
KAG6588823.1	1.0e-25	95.00	COP9 signalosome complex subunit 8, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022927899.1	1.0e-25	95.00	COP9 signalosome complex subunit 8-like [Cucurbita moschata]	[more]
XP_023531250.1	4.0e-25	93.33	COP9 signalosome complex subunit 8-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989724.1	2.0e-24	91.67	COP9 signalosome complex subunit 8-like [Cucurbita maxima]	[more]

BLAST of Spg034839 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P43255	2.0e-19	60.00	COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana OX=3702 GN=CSN8 PE=1 ...	[more]
Q6GQA6	1.1e-12	46.55	COP9 signalosome complex subunit 8 OS=Xenopus laevis OX=8355 GN=csn8 PE=2 SV=2	[more]
Q7ZUZ0	4.0e-12	44.83	COP9 signalosome complex subunit 8 OS=Danio rerio OX=7955 GN=cops8 PE=2 SV=1	[more]
Q99627	5.8e-11	44.83	COP9 signalosome complex subunit 8 OS=Homo sapiens OX=9606 GN=COPS8 PE=1 SV=1	[more]
Q8VBV7	5.8e-11	44.83	COP9 signalosome complex subunit 8 OS=Mus musculus OX=10090 GN=Cops8 PE=1 SV=1	[more]

BLAST of Spg034839 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJG9	2.3e-26	90.63	CSN8_PSD8_EIF3K domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G41...	[more]
A0A6J1EJA8	5.1e-26	95.00	COP9 signalosome complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1JQ49	9.5e-25	91.67	COP9 signalosome complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC111486...	[more]
A0A7J6FZS2	3.6e-24	81.25	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_018920 PE=4 SV=1	[more]
A0A7J6FGG7	3.6e-24	81.25	CSN8_PSD8_EIF3K domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_02...	[more]

BLAST of Spg034839 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14110.1	1.4e-20	60.00	COP9 signalosome, subunit CSN8	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033464	CSN8/PSMD8/EIF3K	PFAM	PF10075	CSN8_PSD8_EIF3K	coord: 15..89 e-value: 3.8E-8 score: 33.4
None	No IPR available	PANTHER	PTHR13339:SF1	BNAA08G07630D PROTEIN	coord: 30..90
IPR033205	COP9 signalosome, subunit CSN8	PANTHER	PTHR13339	COP9 SIGNALOSOME COMPLEX SUBUNIT 8	coord: 30..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034839.1	Spg034839.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010387	COP9 signalosome assembly
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0009753	response to jasmonic acid
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0008180	COP9 signalosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane