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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAGTCGAAGCGTCACAAGGAGTTGTATACAGAGCTGCAATTCATACCAGTAATTTCGATGGAGGACGACATCGCAGGGCCATTACTTGCTGAGTTGACCATGCTGAATCACCTCATGGACTTTCCTCCAGAGTGGAAGTTTGACTATTGCATGCAGGTGCTTGGTGGGCACCTCGACAGCCCAGTCAACCCTAATCCTTCCCATGTTTTTATGCACTTTAACTTTATTTCATTCAGACTTGTTAATCTTGTTTCATCTATGTTTAGGACTGGATGTTGCTACTTTCTTCAATTTTCTTCCTTTATATCATGTTGGTTGATGTAATTGGATGTATGCATTTTGGAACTTCATTATGAATTCTACTATTTCATCTCGTATTCCTATACATTCCAATGTGTTAAATTATACATTGACTAAAAATTTTTGCACACATTACTATATTGTATAAACCTTTTCAAATGAGTGAAAAAATATGTGTAGGAAGGGAAAAAAAAACAACTTAAAAAACAACAAATACGATTCCAGCCCAAATCCAACCCTACAATCAAAACACAGGTATCATACCAAATAAATTTGTTATTAAGAAAAAATTAATAAATAAAGGAGATTGATATCTAGAATTTACATATGTTTGAAATAGAGAGACTCAAAATAAGTGAAAACTTAAAAATGCATAAATTTAGAAGATGAGTCAAATACAATGAGACCGTGAGAGAATATCGAGATTTTCTTTTTTTAAAATATGCGGTTGATGATAATTTACCGTGAACACGAATAAATACCACAGGTATAAATGAAATGAAAACTAATCACTCTCCCATCCTAAAATCATGGAAGTCATAATTCCAAATATCTATAGTTTTTAGCTATTTTTCAGGGTGGTCATTTTTTTCTAGCTAGTCTTCACAATTTCCCTTTCTTATATGCAGGCTTGCCATAATCTCTGTTAACTTTCATATCAATATGGTGCCGAATGAAATTTTGTGAAGGAATGATCATTCTCCATTTTGTTCGATCATTTGGGTTTAAGACAAAATGATCCCTATAAATCTGTGTATGAGGATACATTTCTTAATTCCTCTTTTTCCTTGTACATGTCTTCATTTTCAATCAAATAAAGAAGAAATAGTCGGACAACAGAACAAACATTCACTTCTCACACCTCTCAGCTCAATACCAAATCTGCATGCACAAGCTTTATCATAAAATGGCTGAAACCTTCTTTTACCAGATCTAGAAGACGAAATCATTCACATCTAAAACTGAGTCATTACTTGCAACTCGAAGAAACAGGTAACTAAGCTTCATGCATTCACAAATGACTGGGAGAAAATCAGGCTAGGATGTGAAACATGCGTTGAAATCATGAATTTGCAATATGGAACACTTTAG mRNA sequence ATGGAGTCGAAGCGTCACAAGGAGTTGTATACAGAGCTGCAATTCATACCAGTAATTTCGATGGAGGACGACATCGCAGGGCCATTACTTGCTGAGTTGACCATGCTGAATCACCTCATGGACTTTCCTCCAGAGTGGAAGTTTGACTATTGCATGCAGGTAACTAAGCTTCATGCATTCACAAATGACTGGGAGAAAATCAGGCTAGGATGTGAAACATGCGTTGAAATCATGAATTTGCAATATGGAACACTTTAG Coding sequence (CDS) ATGGAGTCGAAGCGTCACAAGGAGTTGTATACAGAGCTGCAATTCATACCAGTAATTTCGATGGAGGACGACATCGCAGGGCCATTACTTGCTGAGTTGACCATGCTGAATCACCTCATGGACTTTCCTCCAGAGTGGAAGTTTGACTATTGCATGCAGGTAACTAAGCTTCATGCATTCACAAATGACTGGGAGAAAATCAGGCTAGGATGTGAAACATGCGTTGAAATCATGAATTTGCAATATGGAACACTTTAG Protein sequence MESKRHKELYTELQFIPVISMEDDIAGPLLAELTMLNHLMDFPPEWKFDYCMQVTKLHAFTNDWEKIRLGCETCVEIMNLQYGTL
Homology
BLAST of Spg034742 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 54.7 bits (130), Expect = 4.6e-04 Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 0 Query: 1 MESKRHKELYTELQFIPVISMED--DIAGPLLAELTMLNHLMDFPPEWKFDYCMQV 55 +ES HK LYTELQ IP + ++D +A LL + TML+ +D+P EWK+ CM++ Sbjct: 487 IESSLHKRLYTELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRI 542
BLAST of Spg034742 vs. ExPASy TrEMBL
Match: A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 2.2e-04 Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 0 Query: 1 MESKRHKELYTELQFIPVISMED--DIAGPLLAELTMLNHLMDFPPEWKFDYCMQV 55 +ES HK LYTELQ IP + ++D +A LL + TML+ +D+P EWK+ CM++ Sbjct: 487 IESSLHKRLYTELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRI 542
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0065306.1 | 4.6e-04 | 46.43 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VG45 | 2.2e-04 | 46.43 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
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